From 8aae33940d079de8710d3f5000dfc96216075757 Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Tue, 9 Jan 2024 00:36:00 +0000 Subject: [PATCH] site deploy Auto-generated via {sandpaper} Source : 2cfa2eb10b3070f84896b1bc80f28307fb1b3f64 Branch : md-outputs Author : GitHub Actions Time : 2023-12-26 00:33:43 +0000 Message : markdown source builds Auto-generated via {sandpaper} Source : 5c76e4e7c486be89d6421032172a389c52184099 Branch : main Author : Amanda Minter Time : 2023-12-21 14:05:03 +0000 Message : update late tasks from feedback (#85) * Extend challenge in 'Choosing an appropriate model' * Edit to accounting for uncertainty example Store all results and then extract infectious compartment for plotting * Add detail to Ebola case study challenge * update glossary entries * Add callout on ODE solver * clarify purpose of concept dependencies * Updates from review * Remove infection object * Update simulating-transmission.Rmd * Update model-choices.Rmd * Add exercise to `compare_interventions.Rmd` * update modelling interventions after review * Update renv.lock * update plots * make uncertainty plots consistent across episodes * fix broken link * making plots consistent across tutorials * update summary and key points * update plots and add challenge * update introduction * move contact matrix callout and clarify reduction is performed within the model functions * add callout on intervention types * update introduction and reorder text in other sections * update PI section * style code * spell check * Update compare-interventions.Rmd * Apply suggestions from code review Co-authored-by: Andree Valle Campos * Update episodes/modelling-interventions.Rmd Co-authored-by: Andree Valle Campos * add dropdown menus to make section more interactive * add reminder about transmissibility calculation * link to latent period * update model terms * add note on flow diagram * add callout on model rates * Update episodes/simulating-transmission.Rmd Co-authored-by: Andree Valle Campos * Update episodes/simulating-transmission.Rmd Co-authored-by: Andree Valle Campos * Update episodes/simulating-transmission.Rmd Co-authored-by: Andree Valle Campos * Update episodes/simulating-transmission.Rmd Co-authored-by: Andree Valle Campos * Update episodes/simulating-transmission.Rmd Co-authored-by: Andree Valle Campos * update tutorial objectives * distinguish parameter definitions from process descriptions in flow diagram * Update model-choices.Rmd * remove pak call from set up * Update renv.lock --------- Co-authored-by: Andree Valle Campos --- 404.html | 4 ++-- CODE_OF_CONDUCT.html | 2 +- LICENSE.html | 2 +- aio.html | 6 +++--- compare-interventions.html | 2 +- images.html | 4 ++-- index.html | 4 ++-- instructor-notes.html | 4 ++-- instructor/404.html | 4 ++-- instructor/CODE_OF_CONDUCT.html | 2 +- instructor/LICENSE.html | 2 +- instructor/aio.html | 8 ++++---- instructor/compare-interventions.html | 2 +- instructor/images.html | 4 ++-- instructor/index.html | 4 ++-- instructor/instructor-notes.html | 4 ++-- instructor/key-points.html | 4 ++-- instructor/model-choices.html | 2 +- instructor/modelling-interventions.html | 2 +- instructor/profiles.html | 4 ++-- instructor/reference.html | 2 +- instructor/simulating-transmission.html | 6 +++--- key-points.html | 4 ++-- model-choices.html | 2 +- modelling-interventions.html | 2 +- pkgdown.yml | 2 +- profiles.html | 4 ++-- reference.html | 2 +- simulating-transmission.html | 4 ++-- 29 files changed, 49 insertions(+), 49 deletions(-) diff --git a/404.html b/404.html index e42fbdbe..580f91cd 100644 --- a/404.html +++ b/404.html @@ -303,8 +303,8 @@

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