From 10126c3ca35d37171f0f634a6ef4ea5c6d9cb364 Mon Sep 17 00:00:00 2001 From: Degoot-AM Date: Thu, 18 Apr 2024 20:42:00 +0000 Subject: [PATCH 1/4] organize table of episode --- learners/setup.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/learners/setup.md b/learners/setup.md index 1ded76eb..94574ba1 100644 --- a/learners/setup.md +++ b/learners/setup.md @@ -12,7 +12,9 @@ Epiverse-TRACE aims to provide a software ecosystem for [**outbreak analytics**] The tutorials are built around an outbreak analysis pipeline split into three stages: **Early tasks**, **Middle tasks** and **Late tasks**. +

![An overview of the tutorial topics](https://epiverse-trace.github.io/task_pipeline-minimal.svg) +

Each task has its tutorial website. Each tutorial website consists of a set of episodes. From 89ee8fdaf842b6144bdf91f767069b77c9a45f8f Mon Sep 17 00:00:00 2001 From: Degoot-AM Date: Thu, 18 Apr 2024 20:52:16 +0000 Subject: [PATCH 2/4] reverse the order of pre-requists --- learners/setup.md | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) diff --git a/learners/setup.md b/learners/setup.md index 94574ba1..3c7b1a70 100644 --- a/learners/setup.md +++ b/learners/setup.md @@ -12,9 +12,7 @@ Epiverse-TRACE aims to provide a software ecosystem for [**outbreak analytics**] The tutorials are built around an outbreak analysis pipeline split into three stages: **Early tasks**, **Middle tasks** and **Late tasks**. -

![An overview of the tutorial topics](https://epiverse-trace.github.io/task_pipeline-minimal.svg) -

Each task has its tutorial website. Each tutorial website consists of a set of episodes. @@ -35,17 +33,18 @@ Also check out the [glossary](../reference.md) for any terms you may be unfamili ### Epiverse-TRACE R packages -Our strategy is to gradually incorporate specialised **R packages** into our traditional analysis pipeline. These packages should fill the gaps in these epidemiology-specific tasks in response to outbreaks. +Our strategy is to gradually incorporate specialised **R packages** into traditional analysis pipeline. These packages should fill the gaps in these epidemiology-specific tasks in response to outbreaks. -![In **R**, the fundamental unit of shareable code is the **package**. A package bundles together code, data, documentation, and tests and is easy to share with others ([Wickham and Bryan, 2023](https://r-pkgs.org/introduction.html))](episodes/fig/pkgs-hexlogos-2.png) +![In **R**, the fundamental unit of shareable code is the **package**. A package bundles together code, data, documentation, and tests and is easy to share with others ([Wickham and Bryan, 2023](https://r-pkgs.org/introduction.html))](episodes/fig/pkgs-hexlogos-2.png). :::::::::::::::::::::::::::: prereq This course assumes intermediate R knowledge. This workshop is for you if: -- You can use the magrittr pipe `%>%` and/or native pipe `|>` -- You are familiar with functions from `{dplyr}`, `{tidyr}`, and `{ggplot2}` - You can read data into R, transform and reshape data, and make a wide variety of graphs +- You are familiar with functions from `{dplyr}`, `{tidyr}`, and `{ggplot2}` +- You can use the magrittr pipe `%>%` and/or native pipe `|>` + We expect participants to have some exposure to basic Statistical, Mathematical and Epidemic theory concepts, but NOT intermediate or expert familiarity with modeling. From 5e8d3847c3279ed93f1f894f862fad7367c042e7 Mon Sep 17 00:00:00 2001 From: Degoot-AM Date: Thu, 18 Apr 2024 20:57:53 +0000 Subject: [PATCH 3/4] Repalce Q with q in word `Quantify` in the title --- learners/setup.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/learners/setup.md b/learners/setup.md index 3c7b1a70..559e1204 100644 --- a/learners/setup.md +++ b/learners/setup.md @@ -43,7 +43,7 @@ This course assumes intermediate R knowledge. This workshop is for you if: - You can read data into R, transform and reshape data, and make a wide variety of graphs - You are familiar with functions from `{dplyr}`, `{tidyr}`, and `{ggplot2}` -- You can use the magrittr pipe `%>%` and/or native pipe `|>` +- You can use the magrittr pipe `%>%` and/or native pipe `|>`. We expect participants to have some exposure to basic Statistical, Mathematical and Epidemic theory concepts, but NOT intermediate or expert familiarity with modeling. @@ -75,7 +75,7 @@ This tutorial requires **R version 4.0.0 or later**. To check if your R version is up to date: -- In RStudio your R version will be printed in [the console window](https://docs.posit.co/ide/user/ide/guide/code/console.html). Or run `sessionInfo()` there. +- In RStudio your R version will be printed in [the console window](https://docs.posit.co/ide/user/ide/guide/code/console.html). Or run `sessionInfo()`. - **To update R**, download and install the latest version from the [R project website](https://cran.rstudio.com/) for your operating system. From 46e66b25855977efe7c8ecf79381c3286811de4a Mon Sep 17 00:00:00 2001 From: Andree Valle Campos Date: Mon, 17 Jun 2024 23:28:55 +0100 Subject: [PATCH 4/4] fix article in intro --- learners/setup.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/learners/setup.md b/learners/setup.md index 559e1204..efc3f8c0 100644 --- a/learners/setup.md +++ b/learners/setup.md @@ -33,7 +33,7 @@ Also check out the [glossary](../reference.md) for any terms you may be unfamili ### Epiverse-TRACE R packages -Our strategy is to gradually incorporate specialised **R packages** into traditional analysis pipeline. These packages should fill the gaps in these epidemiology-specific tasks in response to outbreaks. +Our strategy is to gradually incorporate specialised **R packages** into a traditional analysis pipeline. These packages should fill the gaps in these epidemiology-specific tasks in response to outbreaks. ![In **R**, the fundamental unit of shareable code is the **package**. A package bundles together code, data, documentation, and tests and is easy to share with others ([Wickham and Bryan, 2023](https://r-pkgs.org/introduction.html))](episodes/fig/pkgs-hexlogos-2.png).