diff --git a/learners/setup.md b/learners/setup.md index 94574ba1..3c7b1a70 100644 --- a/learners/setup.md +++ b/learners/setup.md @@ -12,9 +12,7 @@ Epiverse-TRACE aims to provide a software ecosystem for [**outbreak analytics**] The tutorials are built around an outbreak analysis pipeline split into three stages: **Early tasks**, **Middle tasks** and **Late tasks**. -
![An overview of the tutorial topics](https://epiverse-trace.github.io/task_pipeline-minimal.svg) -
Each task has its tutorial website. Each tutorial website consists of a set of episodes. @@ -35,17 +33,18 @@ Also check out the [glossary](../reference.md) for any terms you may be unfamili ### Epiverse-TRACE R packages -Our strategy is to gradually incorporate specialised **R packages** into our traditional analysis pipeline. These packages should fill the gaps in these epidemiology-specific tasks in response to outbreaks. +Our strategy is to gradually incorporate specialised **R packages** into traditional analysis pipeline. These packages should fill the gaps in these epidemiology-specific tasks in response to outbreaks. -![In **R**, the fundamental unit of shareable code is the **package**. A package bundles together code, data, documentation, and tests and is easy to share with others ([Wickham and Bryan, 2023](https://r-pkgs.org/introduction.html))](episodes/fig/pkgs-hexlogos-2.png) +![In **R**, the fundamental unit of shareable code is the **package**. A package bundles together code, data, documentation, and tests and is easy to share with others ([Wickham and Bryan, 2023](https://r-pkgs.org/introduction.html))](episodes/fig/pkgs-hexlogos-2.png). :::::::::::::::::::::::::::: prereq This course assumes intermediate R knowledge. This workshop is for you if: -- You can use the magrittr pipe `%>%` and/or native pipe `|>` -- You are familiar with functions from `{dplyr}`, `{tidyr}`, and `{ggplot2}` - You can read data into R, transform and reshape data, and make a wide variety of graphs +- You are familiar with functions from `{dplyr}`, `{tidyr}`, and `{ggplot2}` +- You can use the magrittr pipe `%>%` and/or native pipe `|>` + We expect participants to have some exposure to basic Statistical, Mathematical and Epidemic theory concepts, but NOT intermediate or expert familiarity with modeling.