Dev fix(impor_data_event): adding extra validation for dengue 2016 #92
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* dengue-example * adding single color for fill --------- Co-authored-by: zmcucunuba <[email protected]>
* dengue-example * adding single color for fill * modify conditional for var_fill --------- Co-authored-by: zmcucunuba <[email protected]>
* dengue-example * adding single color for fill * modify conditional for var_fill * modify conditional for var_fill * modify conditional for var_fill * modify dengue-example --------- Co-authored-by: zmcucunuba <[email protected]>
* dengue-example * adding single color for fill * modify conditional for var_fill * modify conditional for var_fill * modify conditional for var_fill * modify dengue-example * modify text size and color of plot by variable --------- Co-authored-by: zmcucunuba <[email protected]>
) * dengue-example * adding single color for fill * adecuación de la función plt by variable * modificaciones del ejemplo * últimos cambios a la función plot by variable * Texto del reporte automatizado * automating cases total and modify graphs * commit para hacer pull * Automatización, corrección de gráficas y numeraciónb * automation porcentage age cases and correction graphs * automation porcentage age cases and correction graphs * Automatización del porcentaje * add porcentage symbol --------- Co-authored-by: zmcucunuba <[email protected]> Co-authored-by: megamezl <[email protected]>
* dengue-example * adding single color for fill * adecuación de la función plt by variable * modificaciones del ejemplo * últimos cambios a la función plot by variable * Texto del reporte automatizado * automating cases total and modify graphs * commit para hacer pull * Automatización, corrección de gráficas y numeraciónb * automation porcentage age cases and correction graphs * automation porcentage age cases and correction graphs * Automatización del porcentaje * add porcentage symbol --------- Co-authored-by: zmcucunuba <[email protected]> Co-authored-by: megamezl <[email protected]>
…ion (#32) * modify dengue-example (#22) * adding conditional for single color in plot by variable (#20) * dengue-example * adding single color for fill --------- Co-authored-by: zmcucunuba <[email protected]> * modify conditional of var_fill (#21) * dengue-example * adding single color for fill * modify conditional for var_fill --------- Co-authored-by: zmcucunuba <[email protected]> --------- Co-authored-by: zmcucunuba <[email protected]> * creating the package website * create initial sections of the basic report, cleaning and util functions, updating dengue example * creating function documentation on report_sections, clean_data and utils * fix param functions of get cases distributions by age and gender * adding plot titles and new gender and epiweek section * updatind documentation functions * fix plot function section by gender and epiweek * adding documentation new function of special population * adding new function of special population to basic report * adding spacial distribution section and utils * update documentation functions of spacial distribution section and utils * updating spacial distribution function * updating documentation functions of distribution spatial * updating spatial distribution function * standarization variables and creating clean general function * modify clean sivigila data function and create general functionto clean depto codes * create documentation of new clean functions * refactoring functions of onset and notification date sections * creating documentation function of notification data and onsent symp * modify general clean data function * modify clean sivigila data * creating components of gender and epiweek section * creating components of age and gender, special population section * creating components of age and gender, special population section * creating components of spacial distribution section * fixing variables components of special population and gender * fixing caption text sixe and breaks * removing message plot map * fixing caption text sixe and breaks * fixing caption text size * fixing caption text size and map * fixing title distribution age and week, and percentage cases by age * fixing percentage cases by age * creating skeleton template of basic report * updating template package * adding params to report basic skeleton * updating the documentation functions of the clean data module * fix: documentation of functions * clean: data, functions and files * clean: list disease and ReadMe file * remve: title map * remove day of label * renaming functions and variables * updating documentation functions * renaming function names and refactoring the vignettes content * renaming function names, refactoring the vignettes content and updating documentation * updating documentation and titles plots * updating documentation list_available_diseases_years * fix: documentation functions, vignettes, ReadMe and Dengue Example * fixing general documentation * fix images ReadMe file * fix: ReadMe file and vignettess * remove some dependencies and functions deprecated * Adding tips to ReadMe and Vignettes * updating size images * updating size images ReadMe * adding space ReadMe file * updating align left images * Adding style images ReadMe and Vignettes * Adding style images ReadMe and Vignettes * Adding style images ReadMe and Vignettes * fix: style images ReadMe and Vignettes * fix: style images Vignettes * fix: echo ReadMe * fix: some variables and typo in ReadMe * fixing ReadMe and Vignettes, updating website * adding dependencie map and scale y for plot variable function * fix> scale y for plot variable function * improving group functions * updationg plot map function and dependencies * updationg plot map function and dependencies * updationg examples and documentation * updating examples and documentation * fix: function examples * remove files * fix examples and lintr of modules * fix message plot * divide map plot * adding new functions to municipalities and departments * adding new functions to municipalities and departments * adding new functions to municipalities and departments * adding new functions to municipalities and departments * modify plot and group municipalities and examples * modify plot and group municipalities and examples * modify plot and group municipalities and examples * export functions to departments and municipalities and examples * fix general syntax and rename functions of municipalities * fix called of function geo ocurrence * update template Reporte Basico * preview basic report * add function clean cols by exceptions * adding diseases like input choice on skeleton * modify forma exceptios cols disease in config file * adding analysis of notification department and municipality * update: functions on ReadMe file * update: version and README files --------- Co-authored-by: zmcucunuba <[email protected]>
* creating the package website * create initial sections of the basic report, cleaning and util functions, updating dengue example * creating function documentation on report_sections, clean_data and utils * fix param functions of get cases distributions by age and gender * adding plot titles and new gender and epiweek section * updatind documentation functions * fix plot function section by gender and epiweek * adding documentation new function of special population * adding new function of special population to basic report * adding spacial distribution section and utils * update documentation functions of spacial distribution section and utils * updating spacial distribution function * updating documentation functions of distribution spatial * updating spatial distribution function * standarization variables and creating clean general function * modify clean sivigila data function and create general functionto clean depto codes * create documentation of new clean functions * refactoring functions of onset and notification date sections * creating documentation function of notification data and onsent symp * modify general clean data function * modify clean sivigila data * creating components of gender and epiweek section * creating components of age and gender, special population section * creating components of age and gender, special population section * creating components of spacial distribution section * fixing variables components of special population and gender * fixing caption text sixe and breaks * removing message plot map * fixing caption text sixe and breaks * fixing caption text size * fixing caption text size and map * fixing title distribution age and week, and percentage cases by age * fixing percentage cases by age * creating skeleton template of basic report * updating template package * adding params to report basic skeleton * updating the documentation functions of the clean data module * fix: documentation of functions * clean: data, functions and files * clean: list disease and ReadMe file * remve: title map * remove day of label * renaming functions and variables * updating documentation functions * renaming function names and refactoring the vignettes content * renaming function names, refactoring the vignettes content and updating documentation * updating documentation and titles plots * updating documentation list_available_diseases_years * fix: documentation functions, vignettes, ReadMe and Dengue Example * fixing general documentation * fix images ReadMe file * fix: ReadMe file and vignettess * remove some dependencies and functions deprecated * Adding tips to ReadMe and Vignettes * updating size images * updating size images ReadMe * adding space ReadMe file * updating align left images * Adding style images ReadMe and Vignettes * Adding style images ReadMe and Vignettes * Adding style images ReadMe and Vignettes * fix: style images ReadMe and Vignettes * fix: style images Vignettes * fix: echo ReadMe * fix: some variables and typo in ReadMe * fixing ReadMe and Vignettes, updating website * adding dependencie map and scale y for plot variable function * fix> scale y for plot variable function * improving group functions * updationg plot map function and dependencies * updationg plot map function and dependencies * updationg examples and documentation * updating examples and documentation * fix: function examples * remove files * fix examples and lintr of modules * fix message plot * divide map plot * adding new functions to municipalities and departments * adding new functions to municipalities and departments * adding new functions to municipalities and departments * adding new functions to municipalities and departments * modify plot and group municipalities and examples * modify plot and group municipalities and examples * modify plot and group municipalities and examples * export functions to departments and municipalities and examples * fix general syntax and rename functions of municipalities * fix called of function geo ocurrence * update template Reporte Basico * preview basic report * add function clean cols by exceptions * adding diseases like input choice on skeleton * modify forma exceptios cols disease in config file * adding analysis of notification department and municipality * update: functions on ReadMe file * update: version and README files * fix: typo, identation of code
* creating the package website * create initial sections of the basic report, cleaning and util functions, updating dengue example * creating function documentation on report_sections, clean_data and utils * fix param functions of get cases distributions by age and gender * adding plot titles and new gender and epiweek section * updatind documentation functions * fix plot function section by gender and epiweek * adding documentation new function of special population * adding new function of special population to basic report * adding spacial distribution section and utils * update documentation functions of spacial distribution section and utils * updating spacial distribution function * updating documentation functions of distribution spatial * updating spatial distribution function * standarization variables and creating clean general function * modify clean sivigila data function and create general functionto clean depto codes * create documentation of new clean functions * refactoring functions of onset and notification date sections * creating documentation function of notification data and onsent symp * modify general clean data function * modify clean sivigila data * creating components of gender and epiweek section * creating components of age and gender, special population section * creating components of age and gender, special population section * creating components of spacial distribution section * fixing variables components of special population and gender * fixing caption text sixe and breaks * removing message plot map * fixing caption text sixe and breaks * fixing caption text size * fixing caption text size and map * fixing title distribution age and week, and percentage cases by age * fixing percentage cases by age * creating skeleton template of basic report * updating template package * adding params to report basic skeleton * updating the documentation functions of the clean data module * fix: documentation of functions * clean: data, functions and files * clean: list disease and ReadMe file * remve: title map * remove day of label * renaming functions and variables * updating documentation functions * renaming function names and refactoring the vignettes content * renaming function names, refactoring the vignettes content and updating documentation * updating documentation and titles plots * updating documentation list_available_diseases_years * fix: documentation functions, vignettes, ReadMe and Dengue Example * fixing general documentation * fix images ReadMe file * fix: ReadMe file and vignettess * remove some dependencies and functions deprecated * Adding tips to ReadMe and Vignettes * updating size images * updating size images ReadMe * adding space ReadMe file * updating align left images * Adding style images ReadMe and Vignettes * Adding style images ReadMe and Vignettes * Adding style images ReadMe and Vignettes * fix: style images ReadMe and Vignettes * fix: style images Vignettes * fix: echo ReadMe * fix: some variables and typo in ReadMe * fixing ReadMe and Vignettes, updating website * adding dependencie map and scale y for plot variable function * fix> scale y for plot variable function * improving group functions * updationg plot map function and dependencies * updationg plot map function and dependencies * updationg examples and documentation * updating examples and documentation * fix: function examples * remove files * fix examples and lintr of modules * fix message plot * divide map plot * adding new functions to municipalities and departments * adding new functions to municipalities and departments * adding new functions to municipalities and departments * adding new functions to municipalities and departments * modify plot and group municipalities and examples * modify plot and group municipalities and examples * modify plot and group municipalities and examples * export functions to departments and municipalities and examples * fix general syntax and rename functions of municipalities * fix called of function geo ocurrence * update template Reporte Basico * preview basic report * add function clean cols by exceptions * adding diseases like input choice on skeleton * modify forma exceptios cols disease in config file * adding analysis of notification department and municipality * update: functions on ReadMe file * update: version and README files * fix: typo, identation of code * update: functions and documentation of subnational report
* creating the package website * create initial sections of the basic report, cleaning and util functions, updating dengue example * creating function documentation on report_sections, clean_data and utils * fix param functions of get cases distributions by age and gender * adding plot titles and new gender and epiweek section * updatind documentation functions * fix plot function section by gender and epiweek * adding documentation new function of special population * adding new function of special population to basic report * adding spacial distribution section and utils * update documentation functions of spacial distribution section and utils * updating spacial distribution function * updating documentation functions of distribution spatial * updating spatial distribution function * standarization variables and creating clean general function * modify clean sivigila data function and create general functionto clean depto codes * create documentation of new clean functions * refactoring functions of onset and notification date sections * creating documentation function of notification data and onsent symp * modify general clean data function * modify clean sivigila data * creating components of gender and epiweek section * creating components of age and gender, special population section * creating components of age and gender, special population section * creating components of spacial distribution section * fixing variables components of special population and gender * fixing caption text sixe and breaks * removing message plot map * fixing caption text sixe and breaks * fixing caption text size * fixing caption text size and map * fixing title distribution age and week, and percentage cases by age * fixing percentage cases by age * creating skeleton template of basic report * updating template package * adding params to report basic skeleton * updating the documentation functions of the clean data module * fix: documentation of functions * clean: data, functions and files * clean: list disease and ReadMe file * remve: title map * remove day of label * renaming functions and variables * updating documentation functions * renaming function names and refactoring the vignettes content * renaming function names, refactoring the vignettes content and updating documentation * updating documentation and titles plots * updating documentation list_available_diseases_years * fix: documentation functions, vignettes, ReadMe and Dengue Example * fixing general documentation * fix images ReadMe file * fix: ReadMe file and vignettess * remove some dependencies and functions deprecated * Adding tips to ReadMe and Vignettes * updating size images * updating size images ReadMe * adding space ReadMe file * updating align left images * Adding style images ReadMe and Vignettes * Adding style images ReadMe and Vignettes * Adding style images ReadMe and Vignettes * fix: style images ReadMe and Vignettes * fix: style images Vignettes * fix: echo ReadMe * fix: some variables and typo in ReadMe * fixing ReadMe and Vignettes, updating website * adding dependencie map and scale y for plot variable function * fix> scale y for plot variable function * improving group functions * updationg plot map function and dependencies * updationg plot map function and dependencies * updationg examples and documentation * updating examples and documentation * fix: function examples * remove files * fix examples and lintr of modules * fix message plot * divide map plot * adding new functions to municipalities and departments * adding new functions to municipalities and departments * adding new functions to municipalities and departments * adding new functions to municipalities and departments * modify plot and group municipalities and examples * modify plot and group municipalities and examples * modify plot and group municipalities and examples * export functions to departments and municipalities and examples * fix general syntax and rename functions of municipalities * fix called of function geo ocurrence * update template Reporte Basico * preview basic report * add function clean cols by exceptions * adding diseases like input choice on skeleton * modify forma exceptios cols disease in config file * adding analysis of notification department and municipality * update: functions on ReadMe file * update: version and README files * fix: typo, identation of code * update: functions and documentation of subnational report * generate NAMESPACE * fix: documentation and definition of import functions * fix: documentation and definition of plot functions * update: clean functions and vignette
* Copy pkgdown workflow from pkgtemplate * Remove docs/ folder * Remove Meta/ folder
* translation and updated functions and documentation of import data module * translation and updated functions and documentation of cleaning data module * translation and updated functions and documentation of group data module * translation and updated functions and documentation of filter data module * translation and updated functions and documentation of plotting module * translation and updated functions and documentation of utils module * translation and updating of filtering and parsing functions and their documentation * translation and updating of Reporte Basico template * translation and updating README files * translation and updating sections of Reporte Basico template * updating parameters and exceptions of disease * translation and updating sections of package vignette * updating README file with all sections and translated functions * updating of the import module functions documentation in Spanish * Updating the documentation of the cleaning module functions in Spanish * Updating the documentation of the checking module functions in Spanish * Updating the documentation of the plotting module functions in Spanish * Updating the documentation of the utils module functions in Spanish * Updating the documentation of the general functions in Spanish * Updating get started section and user descriptions of the package in README files and vignette * deleting some extra files of the Reporte Basico template * updating users definition and import package README file * change parameters of skeleton template
…p diseases (#42) * fix: disease o event title on skeleton Reporte Basico * fix: description of temporal distribution, sex and conclusion sections * adding multiple diseases import, plot and group
* fix: disease o event title on skeleton Reporte Basico * fix: description of temporal distribution, sex and conclusion sections * adding multiple diseases import, plot and group * adding nombre_evento to agrupar_cols_casos
* fix: disease o event title on skeleton Reporte Basico * fix: description of temporal distribution, sex and conclusion sections * adding multiple diseases import, plot and group * adding nombre_evento to agrupar_cols_casos * fix: temporal section month with most cases and validation of malaria import * adding validation to mortalidad event
* fix: disease o event title on skeleton Reporte Basico * fix: description of temporal distribution, sex and conclusion sections * adding multiple diseases import, plot and group * adding nombre_evento to agrupar_cols_casos * fix: temporal section month with most cases and validation of malaria import * adding validation to mortalidad event * adding condition of validation mortality
* fix: disease o event title on skeleton Reporte Basico * fix: description of temporal distribution, sex and conclusion sections * adding multiple diseases import, plot and group * adding nombre_evento to agrupar_cols_casos * fix: temporal section month with most cases and validation of malaria import * adding validation to mortalidad event * adding condition of validation mortality * updating plot multiple disease and vignettes
* fix: disease o event title on skeleton Reporte Basico * fix: description of temporal distribution, sex and conclusion sections * adding multiple diseases import, plot and group * adding nombre_evento to agrupar_cols_casos * fix: temporal section month with most cases and validation of malaria import * adding validation to mortalidad event * adding condition of validation mortality * updating plot multiple disease and vignettes * remove whitespace * updating generic plotting function for multiple disease visualisation
* fix: disease o event title on skeleton Reporte Basico * fix: description of temporal distribution, sex and conclusion sections * adding multiple diseases import, plot and group * adding nombre_evento to agrupar_cols_casos * fix: temporal section month with most cases and validation of malaria import * adding validation to mortalidad event * adding condition of validation mortality * updating plot multiple disease and vignettes * remove whitespace * updating generic plotting function for multiple disease visualisation * fixing whitespaces
* fix: disease o event title on skeleton Reporte Basico * fix: description of temporal distribution, sex and conclusion sections * adding multiple diseases import, plot and group * adding nombre_evento to agrupar_cols_casos * fix: temporal section month with most cases and validation of malaria import * adding validation to mortalidad event * adding condition of validation mortality * updating plot multiple disease and vignettes * remove whitespace * updating generic plotting function for multiple disease visualisation * fixing whitespaces * fix conditional of morbility on skeleton * updating conditional of morbility on skeleton
…mples and documentation
…ons and parameters
…ons and parameters
…ons and parameters
…ed up the code (#72) * fix (skeleton): modified default output and removed lost reference * chore(plot_fecha_notifica): added input validations and updated documentation * fix(plot_map): added input validations, updated documentation and redefined map title * fix(plot_fecha_inisintomas): added input validations, updated documentation and value year to uni_marca * chore(plot_sex): added input validations, updated documentation * chore: create lintr config file from PR 67 * chore(.Rbuildignore): added .lintr config file from PR 67 * chore(DESCRIPTION): updated R depends, RoxygenNote and added Andres Moreno as contributor This changes from PR 66, PR 70 and .lintr check * chore(config): updated key additional_diseases to letter case of SIVIGILA * fix(skeleton): removed if complex from PR 67 and lintr check * fix and feat (cleaning_module): added validationsa and removing code based in lintr check This changes include: Added validations in almost all clean functions Added stringr::fixed where apply it Removed unnecessary TRUEs Removed variable initialization with c() Based PR 67 and lintr check * fix and feat (utils): Added validations, renamed variables, and removed code based on linting checks Changes in this commit: - Added validations to nearly all utility functions. - Applied stringr::fixed where necessary. - Removed unnecessary TRUE values. - Eliminated variable initialization with c(). - Replaced paste function with paste0. This addresses PR 67 and aligns with linting checks. * fix and feat (plotting_module): Added validations, renamed variables, functions and removed code based on linting checks Changes in this commit: - Added validations to all plotting functions. - Updated documentation and examples. - Renamed functions and variables related to municipalities and departments. - Removed unnecessary TRUE values. - Eliminated variable initialization with `c()`. - Replaced `paste` function with `paste0`. This commit addresses some items from PR 67 and aligns with linting checks. * fix and refactoring: validations, renamed variables and removed code based on linting checks Changes in this commit: - Refactoring validations of all functions. - Renamed variables related to municipalities and departments. - Eliminated variable initialization with `c()`. This commit addresses some items from PR 67 and aligns with linting checks. * fix and refactoring: validations and removed code based on linting checks Changes in this commit: - Refactoring validations of all functions. - Eliminated variable initialization with `c()`. - Replaced `paste` function with `paste0`. This commit addresses some items from PR 67 and aligns with linting checks. * fix(scraping): modified code base on linting checks Changes in this commit: - Eliminated variable initialization with `c()`. - Replaced `paste` function with `paste0`. - Applied stringr::fixed where necessary. This commit addresses items from PR 67 and aligns with linting checks. * chore(README): updated with linting changes, validations and functions * chore(vignette): Added 'nolint' comment for pak installation. This commit addresses items from PR 67 and aligns with linting checks. * fix(utils): added character validation and updated documentation * fix(limpiar_fecha_event): added character validation and updated documentation * fix(plot_map): remove repited departments and municipalities * chore(skeleton): include all parameters in function calls * chore(README): update parameters name and library setup * chore(README): update map visualisation
* Delete inst/extdata/depto_adm_shp directory fix: deleted old shapefiles * Create .delete fix: created new DANE shapes directory * fix: added new DANE shape files * fix: Update config.yml * fix: Update plotting.R to include new DANE shapes * fix: delete inst/extdata/depto_adm_shp_simp/.delete * updated plot map function --------- Co-authored-by: Andrés Moreno <[email protected]> Co-authored-by: Andrés Moreno <[email protected]>
* feat (plot_map): added logic when dpto and mpio values are absent * feat(geo_filtro/agrupar_dpto): added logic when dpto and mpio values are ausent * feat(utils): added logic when dpto and mpio values are ausent * fix(config): removed tilde in Cancer de Mama * chore(plotting): completed documentation of examples * feat(plot): added tendency option to plot_fecha_inisintomas and plot_fecha_notifica This commit includes: - Added tendency option to plot_fecha_inisintomas and plot_fecha_notifica - Updated documentation and examples with the new parameter "tipo" * feat(plot_mpios): updated input nomb_col with the return parameters of agrupar_mpio This commit includes: - Updated input nomb_col with the return parameters of agrupar_mpio - Updated function's documentation and examples * chore(plotting_module): updated documentation and examples * fix(plot_mpio): moved parameter nom_col validation * feat(divipola_data): created data set with codes and geo info of DIVIPOLA This commit includes: - Creation of RData files and xlsx - Creation of R file description of dataset * fix(lintr): lenght of example descriptions * feat(import_geo_cods): added option to load DIVOPOLA data directly from a file * fix(plot_mpio): reference correct data frame to define the nomb_col * feat(plot_map): removed message of st_read and fixed name column of polygon * fix(agrupar_mpio): column name reference to geo ocurrence when dpto is empty or not filter * check(geo_filter): validated behavior with mpio * check(modificar_cod_mun): validated composition of code * check(utils): validated modify cod mpio * fix(modficar_cod_mun ): cod_dpto variances * feat(plot_map): added Colombia map option and logic * chore: updated documentation and skeleton * feat(estandarizar_geo_cod): added complete DIVIPOLA standart into mpios * feat(geo_filtro): removed modificar_cod_mun * feat(plot_map): removed function called of modificar_cod_mun * chore(plot_map): passed first dpto validation * feat(plot_map): updating conditional to polygon_seleccionado$MPIO_CCDGO == data_dept$codigo_municipio * feat(estandarizar_texto): creating function and adding in obtener_info_depts * chore(modificar_cod_mun): removed function of documentation * chore(plot_map): added correct parameter in geo_filtro * chore(estandarizar_texto): updated input of example * chore(config): fix feo column names * chore(config): added key related diseases * chore(config): removed accent of departments * chore(skeleton): removed accent of deparments * feat(standardize_geo_cods): added validation when format is complete for dept or mun * lintr(plot_map): fixed items of lintr scanner * chore(README): removed accent of department * chore(README): removed accent of example department * removed estandarizar_texto function * chore(plot_map): defined font family * feat(list_events): added zika disease * fix: removed temp validations * fix: added lenght validation in pos related to dpto and mpio * fix: position title * fix: modify legend position of plots
* feat (plot_map): added logic when dpto and mpio values are absent * feat(geo_filtro/agrupar_dpto): added logic when dpto and mpio values are ausent * feat(utils): added logic when dpto and mpio values are ausent * fix(config): removed tilde in Cancer de Mama * chore(plotting): completed documentation of examples * feat(plot): added tendency option to plot_fecha_inisintomas and plot_fecha_notifica This commit includes: - Added tendency option to plot_fecha_inisintomas and plot_fecha_notifica - Updated documentation and examples with the new parameter "tipo" * feat(plot_mpios): updated input nomb_col with the return parameters of agrupar_mpio This commit includes: - Updated input nomb_col with the return parameters of agrupar_mpio - Updated function's documentation and examples * chore(plotting_module): updated documentation and examples * fix(plot_mpio): moved parameter nom_col validation * feat(divipola_data): created data set with codes and geo info of DIVIPOLA This commit includes: - Creation of RData files and xlsx - Creation of R file description of dataset * fix(lintr): lenght of example descriptions * feat(import_geo_cods): added option to load DIVOPOLA data directly from a file * fix(plot_mpio): reference correct data frame to define the nomb_col * feat(plot_map): removed message of st_read and fixed name column of polygon * fix(agrupar_mpio): column name reference to geo ocurrence when dpto is empty or not filter * check(geo_filter): validated behavior with mpio * check(modificar_cod_mun): validated composition of code * check(utils): validated modify cod mpio * fix(modficar_cod_mun ): cod_dpto variances * feat(plot_map): added Colombia map option and logic * chore: updated documentation and skeleton * feat(estandarizar_geo_cod): added complete DIVIPOLA standart into mpios * feat(geo_filtro): removed modificar_cod_mun * feat(plot_map): removed function called of modificar_cod_mun * chore(plot_map): passed first dpto validation * feat(plot_map): updating conditional to polygon_seleccionado$MPIO_CCDGO == data_dept$codigo_municipio * feat(estandarizar_texto): creating function and adding in obtener_info_depts * chore(modificar_cod_mun): removed function of documentation * chore(plot_map): added correct parameter in geo_filtro * chore(estandarizar_texto): updated input of example * chore(config): fix feo column names * chore(config): added key related diseases * chore(config): removed accent of departments * chore(skeleton): removed accent of deparments * feat(standardize_geo_cods): added validation when format is complete for dept or mun * lintr(plot_map): fixed items of lintr scanner * chore(README): removed accent of department * chore(README): removed accent of example department * removed estandarizar_texto function * chore(plot_map): defined font family * feat(list_events): added zika disease * fix: removed temp validations * fix: added lenght validation in pos related to dpto and mpio * fix: position title * fix: modify legend position of plots * feat: updated validation response from SIVIGILA API
Created suggestion section in the report template: Reporte Basico, as a result of usability testing and learning approach of the package Refs: #82
* feat(skeleton): added toggle for temporal distribution section Created toggle for temporal distribution section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85 * feat(skeleton): added toggle for sex and epiweek distribution section Created toggle for sex and epiweek section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85 * feat(skeleton): modified the paragraph text of temporal distribution with paste0 Modified the paragraph text of temporal distribution with paste0 for toggle option and fixed the month with the most cases. Refs: #85 * feat(skeleton): added toggle for age distribution section Created toggle for age section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85 * feat(skeleton): added toggle for age and sex distribution section Created toggle for age and sex section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85 * feat(skeleton): added toggle for municipality distribution section Created toggle for municipality section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85 * feat(skeleton): added toggle for spatial distribution section Created toggle for spatial section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85 * feat(skeleton): added toggle for suggestions section Created toggle for suggestions section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85
* fix(impor_data_event): adding extra validation for dengue 2016 Created extra validation for cod_eve column in the data that provides SIVIGILA source because, it appears duplicated in Dengue 2016 Refs: #90 * fix(impor_data_event): refactoring validation for dengue 2016 Refactoring extra validation for cod_eve column in the data that provides SIVIGILA source. It appears duplicated in Dengue 2016 Refs: #90
* feat(skeleton): added toggle for temporal distribution section Created toggle for temporal distribution section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85 * feat(skeleton): added toggle for sex and epiweek distribution section Created toggle for sex and epiweek section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85 * feat(skeleton): modified the paragraph text of temporal distribution with paste0 Modified the paragraph text of temporal distribution with paste0 for toggle option and fixed the month with the most cases. Refs: #85 * feat(skeleton): added toggle for age distribution section Created toggle for age section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85 * feat(skeleton): added toggle for age and sex distribution section Created toggle for age and sex section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85 * feat(skeleton): added toggle for municipality distribution section Created toggle for municipality section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85 * feat(skeleton): added toggle for spatial distribution section Created toggle for spatial section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85 * feat(skeleton): added toggle for suggestions section Created toggle for suggestions section in the report template: Reporte Basico. Includes the section title, text, calculations and plots. Refs: #85 * feat(skeleton): removed toggle for suggestion section Removed toggle for suggestions section in the report template: Reporte Basico. Refs: #85
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NEWS.mdWhat kind of change does this PR introduce? (Bug fix, feature, docs update, ...)
import_data_functionupdatedWhat is the current behavior? (You can also link to an open issue here)
The cod_eve column in the data that provides SIVIGILA appears duplicated in Dengue 2016. Related issue Data dengue for 2016 #90
What is the new behavior (if this is a feature change)?
Created extra validation for cod_eve column in the data of Dengue 2016
Does this PR introduce a breaking change? (What changes might users need to make in their application due to this PR?)
No, it does.
Other information:
The only year for Dengue with this problem is 2016.
Refs: #90