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chore(skeleton): add logic for ruta_dir and cache params
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Ref: #206
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GeraldineGomez committed Nov 13, 2024
1 parent f9ad459 commit b089d72
Showing 1 changed file with 22 additions and 8 deletions.
30 changes: 22 additions & 8 deletions inst/rmarkdown/templates/reports/skeleton/skeleton.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -118,7 +118,7 @@ if (params$municipio != "") {
fuente <- "Fuente SIVIGILA, Datos libres"
```

```{r tam_graficos}
```{r tam-graficos}
casos_years_hg <- 5
gr_casos_years_wd <- 11
gr_tip_cas_al <- 5
Expand Down Expand Up @@ -235,9 +235,14 @@ if (knitr::is_html_output()) {
```

```{r import-data, include = FALSE}
ruta_dir <- NULL
if (!params$cache) {
ruta_dir <- tempdir()
}
data_event <- import_data_event(nombre_event = params$nombre_evento,
years = params$year,
cache = TRUE)
cache = params$cache,
ruta_dir = tempdir())
mostrar_sex <- stringr::str_detect(tolower(params$nombre_evento),
stringr::fixed("materna"))
etiqueta_geo <- "municipios"
Expand Down Expand Up @@ -304,7 +309,8 @@ data_event_years <-
import_data_event(nombre_event = params$nombre_evento,
years = seq(params$year - 4,
params$year - 1),
cache = TRUE)
cache = params$cache,
ruta_dir = tempdir())
data_event_years <- rbind(data_event, data_event_years)
data_years_limpia <- limpiar_data_sivigila(data_event_years)
data_years_filtrada <- data_years_limpia
Expand Down Expand Up @@ -463,7 +469,9 @@ if (params$departamento == "" && params$municipio == "") {
text_mapa_casos <- ""
}
mapa <- plot_map(data_agrupada = dist_espacial_casos,
col_distribucion = "casos")
col_distribucion = "casos",
cache = params$cache,
ruta_dir = tempdir())
```

```{r mapa-casos, echo = FALSE, error = FALSE, warning = FALSE, include = TRUE, message = FALSE, cache = FALSE, results = FALSE, comment = FALSE, fig.height = gr_mapa_al, fig.width = gr_mapa_an, fig.align = 'center', fig.cap = paste0("Distribución espacial de casos ", text_mapa_casos , " - ", text_ext_geo), include = params$spatial_distribution}
Expand Down Expand Up @@ -508,7 +516,8 @@ plot_per_etn(data_agrupada = casos_per_etn)
```{r incidencia-total, results='hide', echo = FALSE, error = FALSE, warning = FALSE, include = FALSE, message = FALSE}
incidencia_total <- calcular_incidencia(data_agrupada =
dist_espacial,
cache = TRUE)
cache = params$cache,
ruta_dir = tempdir())
cond_incidencia <-
obtener_cond_inciden_event(cod_eve = dist_espacial$cod_eve[1])
```
Expand All @@ -532,7 +541,8 @@ if (params$departamento != "") {
incidencias_sex <-
calcular_incidencia_sex(data_agrupada = casos_sex,
dpto = nomb_dpto,
cache = TRUE)
cache = params$cache,
ruta_dir = tempdir())
incidencia_mayor_sex <- obtener_fila_mas_casos(data_event =
incidencias_sex$data_incidencia,
nomb_col = "incidencia ")
Expand Down Expand Up @@ -560,7 +570,9 @@ plot_sex(data_agrupada = incidencias_sex$data_incidencia,
```{r incidencia-geo, results='hide', echo = FALSE, error = FALSE, warning = FALSE, include = FALSE, message = FALSE}
incidencias_geo <-
calcular_incidencia_geo(data_agrupada =
dist_espacial)
dist_espacial,
cache = params$cache,
ruta_dir = tempdir())
```

```{r text-pop-incidencia-geo}
Expand Down Expand Up @@ -593,7 +605,9 @@ if (params$departamento == "" && params$municipio == "") {
if (params$municipio != "") {
text_mapa_inciden <- ""
}
mapa <- plot_map(data_agrupada = incidencias_geo$data_incidencia)
mapa <- plot_map(data_agrupada = incidencias_geo$data_incidencia,
cache = params$cache,
ruta_dir = tempdir())
```

```{r mapa-incidencias, echo = FALSE, error = FALSE, warning = FALSE, include = TRUE, message = FALSE, cache = FALSE, results = FALSE, comment = FALSE, fig.height = gr_map_incid_al, fig.width = gr_map_incid_an, fig.align = 'center', fig.cap = paste0("Incidencia según distribución geográfica ", text_mapa_inciden, " - ", text_ext_geo), include = params$spatial_distribution}
Expand Down

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