CITATION.cff

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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "sivirep" in publications use:'
type: software
license: MIT
title: 'sivirep: Data Wrangling and Automated Reports from ''SIVIGILA'' Source'
version: 1.0.1
doi: 10.32614/CRAN.package.sivirep
abstract: Data wrangling, pre-processing, and generating automated reports from Colombia's
  epidemiological surveillance system, 'SIVIGILA' <https://portalsivigila.ins.gov.co/>.
  It provides a customizable R Markdown template for analysis and automatic generation
  of epidemiological reports that can be adapted to local, regional, and national
  contexts. This tool offers a standardized and reproducible workflow that helps to
  reduce manual labor and potential errors in report generation, improving their efficiency
  and consistency.
authors:
- family-names: Gómez-Millán
  given-names: Geraldine
  email: geralidine.gomez@javeriana.edu.co
  orcid: https://orcid.org/0009-0007-8701-0568
- family-names: Cucunubá
  given-names: Zulma M.
  email: zulma.cucunuba@javeriana.edu.co
  orcid: https://orcid.org/0000-0002-8165-3198
- family-names: Mendez-Romero
  given-names: Jennifer A.
  email: jenniferk2@hotmail.com
  orcid: https://orcid.org/0009-0001-6138-0225
- family-names: Huguett-Aragón
  given-names: Claudia
  email: chuguett@hotmail.com
  orcid: https://orcid.org/0000-0002-9814-2386
repository: https://CRAN.R-project.org/package=sivirep
repository-code: https://github.com/epiverse-trace/sivirep
url: https://epiverse-trace.github.io/sivirep/
contact:
- family-names: Gómez-Millán
  given-names: Geraldine
  email: geralidine.gomez@javeriana.edu.co
  orcid: https://orcid.org/0009-0007-8701-0568
keywords:
- colombia
- epidemiological-surveillance
- epiverse
- public-health
- r
- r-package
references:
- type: software
  title: config
  abstract: 'config: Manage Environment Specific Configuration Values'
  notes: Imports
  url: https://rstudio.github.io/config/
  repository: https://CRAN.R-project.org/package=config
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@rstudio.com
  year: '2024'
  doi: 10.32614/CRAN.package.config
- type: software
  title: dplyr
  abstract: 'dplyr: A Grammar of Data Manipulation'
  notes: Imports
  url: https://dplyr.tidyverse.org
  repository: https://CRAN.R-project.org/package=dplyr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: François
    given-names: Romain
    orcid: https://orcid.org/0000-0002-2444-4226
  - family-names: Henry
    given-names: Lionel
  - family-names: Müller
    given-names: Kirill
    orcid: https://orcid.org/0000-0002-1416-3412
  - family-names: Vaughan
    given-names: Davis
    email: davis@posit.co
    orcid: https://orcid.org/0000-0003-4777-038X
  year: '2024'
  doi: 10.32614/CRAN.package.dplyr
- type: software
  title: epitrix
  abstract: 'epitrix: Small Helpers and Tricks for Epidemics Analysis'
  notes: Imports
  url: http://www.repidemicsconsortium.org/epitrix/
  repository: https://CRAN.R-project.org/package=epitrix
  authors:
  - family-names: Jombart
    given-names: Thibaut
    email: thibautjombart@gmail.com
  - family-names: Cori
    given-names: Anne
    email: a.cori@imperial.ac.uk
  - family-names: Finger
    given-names: Flavio
    email: flavio.finger@lshtm.ac.uk
  year: '2024'
  doi: 10.32614/CRAN.package.epitrix
- type: software
  title: ggplot2
  abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
  notes: Imports
  url: https://ggplot2.tidyverse.org
  repository: https://CRAN.R-project.org/package=ggplot2
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Chang
    given-names: Winston
    orcid: https://orcid.org/0000-0002-1576-2126
  - family-names: Henry
    given-names: Lionel
  - family-names: Pedersen
    given-names: Thomas Lin
    email: thomas.pedersen@posit.co
    orcid: https://orcid.org/0000-0002-5147-4711
  - family-names: Takahashi
    given-names: Kohske
  - family-names: Wilke
    given-names: Claus
    orcid: https://orcid.org/0000-0002-7470-9261
  - family-names: Woo
    given-names: Kara
    orcid: https://orcid.org/0000-0002-5125-4188
  - family-names: Yutani
    given-names: Hiroaki
    orcid: https://orcid.org/0000-0002-3385-7233
  - family-names: Dunnington
    given-names: Dewey
    orcid: https://orcid.org/0000-0002-9415-4582
  - family-names: Brand
    given-names: Teun
    name-particle: van den
    orcid: https://orcid.org/0000-0002-9335-7468
  year: '2024'
  doi: 10.32614/CRAN.package.ggplot2
- type: software
  title: httr2
  abstract: 'httr2: Perform HTTP Requests and Process the Responses'
  notes: Imports
  url: https://httr2.r-lib.org
  repository: https://CRAN.R-project.org/package=httr2
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2024'
  doi: 10.32614/CRAN.package.httr2
- type: software
  title: kableExtra
  abstract: 'kableExtra: Construct Complex Table with ''kable'' and Pipe Syntax'
  notes: Imports
  url: http://haozhu233.github.io/kableExtra/
  repository: https://CRAN.R-project.org/package=kableExtra
  authors:
  - family-names: Zhu
    given-names: Hao
    email: haozhu233@gmail.com
    orcid: https://orcid.org/0000-0002-3386-6076
  year: '2024'
  doi: 10.32614/CRAN.package.kableExtra
- type: software
  title: readxl
  abstract: 'readxl: Read Excel Files'
  notes: Imports
  url: https://readxl.tidyverse.org
  repository: https://CRAN.R-project.org/package=readxl
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@posit.co
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2024'
  doi: 10.32614/CRAN.package.readxl
- type: software
  title: rlang
  abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
  notes: Imports
  url: https://rlang.r-lib.org
  repository: https://CRAN.R-project.org/package=rlang
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2024'
  doi: 10.32614/CRAN.package.rlang
- type: software
  title: sf
  abstract: 'sf: Simple Features for R'
  notes: Imports
  url: https://r-spatial.github.io/sf/
  repository: https://CRAN.R-project.org/package=sf
  authors:
  - family-names: Pebesma
    given-names: Edzer
    email: edzer.pebesma@uni-muenster.de
    orcid: https://orcid.org/0000-0001-8049-7069
  year: '2024'
  doi: 10.32614/CRAN.package.sf
- type: software
  title: showtext
  abstract: 'showtext: Using Fonts More Easily in R Graphs'
  notes: Imports
  url: https://github.com/yixuan/showtext
  repository: https://CRAN.R-project.org/package=showtext
  authors:
  - family-names: Qiu
    given-names: Yixuan
  - family-names: details.
    given-names: authors/contributors of the included software. See file AUTHORS for
  year: '2024'
  doi: 10.32614/CRAN.package.showtext
- type: software
  title: stats
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: stringr
  abstract: 'stringr: Simple, Consistent Wrappers for Common String Operations'
  notes: Imports
  url: https://stringr.tidyverse.org
  repository: https://CRAN.R-project.org/package=stringr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2024'
  doi: 10.32614/CRAN.package.stringr
- type: software
  title: sysfonts
  abstract: 'sysfonts: Loading Fonts into R'
  notes: Imports
  url: https://github.com/yixuan/sysfonts
  repository: https://CRAN.R-project.org/package=sysfonts
  authors:
  - family-names: Qiu
    given-names: Yixuan
  - family-names: details.
    given-names: authors/contributors of the included fonts. See file AUTHORS for
  year: '2024'
  doi: 10.32614/CRAN.package.sysfonts
- type: software
  title: tools
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: utils
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: xml2
  abstract: 'xml2: Parse XML'
  notes: Imports
  url: https://xml2.r-lib.org/
  repository: https://CRAN.R-project.org/package=xml2
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Hester
    given-names: Jim
  - family-names: Ooms
    given-names: Jeroen
  year: '2024'
  doi: 10.32614/CRAN.package.xml2
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2024'
  doi: 10.32614/CRAN.package.knitr
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2024'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: spelling
  abstract: 'spelling: Tools for Spell Checking in R'
  notes: Suggests
  url: https://ropensci.r-universe.dev/spelling
  repository: https://CRAN.R-project.org/package=spelling
  authors:
  - family-names: Ooms
    given-names: Jeroen
    email: jeroenooms@gmail.com
    orcid: https://orcid.org/0000-0002-4035-0289
  - family-names: Hester
    given-names: Jim
    email: james.hester@rstudio.com
  year: '2024'
  doi: 10.32614/CRAN.package.spelling
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2024'
  doi: 10.32614/CRAN.package.testthat
  version: '>= 3.0.0'
- type: software
  title: 'R: A Language and Environment for Statistical Computing'
  notes: Depends
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
  version: '>= 4.0.0'