diff --git a/.gitignore b/.gitignore index 9cad142..b7682a9 100644 --- a/.gitignore +++ b/.gitignore @@ -51,3 +51,4 @@ po/*~ # renv sandbox needed for renv version 0.16.0 renv/sandbox # OPTIONAL +renv/sandbox diff --git a/renv/profiles/lesson-requirements/renv.lock b/renv/profiles/lesson-requirements/renv.lock index 9e9ecad..90693e9 100644 --- a/renv/profiles/lesson-requirements/renv.lock +++ b/renv/profiles/lesson-requirements/renv.lock @@ -1,6 +1,6 @@ { "R": { - "Version": "4.2.2", + "Version": "4.3.2", "Repositories": [ { "Name": "carpentries", @@ -19,21 +19,21 @@ "Packages": { "BH": { "Package": "BH", - "Version": "1.81.0-1", + "Version": "1.84.0-0", "Source": "Repository", "Repository": "CRAN", - "Hash": "68122010f01c4dcfbe58ce7112f2433d" + "Hash": "a8235afbcd6316e6e91433ea47661013" }, "DBI": { "Package": "DBI", - "Version": "1.1.3", + "Version": "1.2.1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "methods" ], - "Hash": "b2866e62bab9378c3cc9476a1954226b" + "Hash": "9b4993e98e0e19da84c168460c032fef" }, "EpiEstim": { "Package": "EpiEstim", @@ -107,7 +107,7 @@ }, "MASS": { "Package": "MASS", - "Version": "7.3-60", + "Version": "7.3-60.0.1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -118,11 +118,11 @@ "stats", "utils" ], - "Hash": "a56a6365b3fa73293ea8d084be0d9bb0" + "Hash": "b765b28387acc8ec9e9c1530713cb19c" }, "MCMCpack": { "Package": "MCMCpack", - "Version": "1.6-3", + "Version": "1.7-0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -138,11 +138,11 @@ "stats", "utils" ], - "Hash": "520335edba1c95a90eec54d693727723" + "Hash": "225c857e115cf09e1804ff3e597fe555" }, "Matrix": { "Package": "Matrix", - "Version": "1.6-4", + "Version": "1.6-5", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -155,7 +155,7 @@ "stats", "utils" ], - "Hash": "d9c655b30a2edc6bb2244c1d1e8d549d" + "Hash": "8c7115cd3a0e048bda2a7cd110549f7a" }, "MatrixModels": { "Package": "MatrixModels", @@ -172,7 +172,7 @@ }, "QuickJSR": { "Package": "QuickJSR", - "Version": "1.0.8", + "Version": "1.1.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -180,7 +180,7 @@ "Rcpp", "jsonlite" ], - "Hash": "193b83c7d9a8c110da05e1bd0f1f2f55" + "Hash": "765d4f4bcec02ed0663d4de3db23f6e5" }, "R6": { "Package": "R6", @@ -204,14 +204,14 @@ }, "Rcpp": { "Package": "Rcpp", - "Version": "1.0.11", + "Version": "1.0.12", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "methods", "utils" ], - "Hash": "ae6cbbe1492f4de79c45fce06f967ce8" + "Hash": "5ea2700d21e038ace58269ecdbeb9ec0" }, "RcppEigen": { "Package": "RcppEigen", @@ -252,7 +252,7 @@ }, "StanHeaders": { "Package": "StanHeaders", - "Version": "2.26.28", + "Version": "2.32.5", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -260,7 +260,7 @@ "RcppEigen", "RcppParallel" ], - "Hash": "35b5aee9ec9507aca2e021997a9e557e" + "Hash": "b8d6850ef3e330bc108e712679e79443" }, "abind": { "Package": "abind", @@ -316,7 +316,7 @@ }, "bayesplot": { "Package": "bayesplot", - "Version": "1.10.0", + "Version": "1.11.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -333,7 +333,7 @@ "tidyselect", "utils" ], - "Hash": "9c4f6ab31da906185d23e69a88595cf7" + "Hash": "156158a60d3d9c9e41837cb62d12a287" }, "binom": { "Package": "binom", @@ -470,7 +470,7 @@ }, "checkmate": { "Package": "checkmate", - "Version": "2.3.0", + "Version": "2.3.1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -478,7 +478,7 @@ "backports", "utils" ], - "Hash": "ed4275b13c6ab74b89a31def0b6bf835" + "Hash": "c01cab1cb0f9125211a6fc99d540e315" }, "class": { "Package": "class", @@ -511,14 +511,14 @@ }, "cli": { "Package": "cli", - "Version": "3.6.1", + "Version": "3.6.2", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "utils" ], - "Hash": "89e6d8219950eac806ae0c489052048a" + "Hash": "1216ac65ac55ec0058a6f75d7ca0fd52" }, "clipr": { "Package": "clipr", @@ -560,14 +560,14 @@ }, "coda": { "Package": "coda", - "Version": "0.19-4", + "Version": "0.19-4.1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "lattice" ], - "Hash": "24b6d006b8b2343876cf230687546932" + "Hash": "af436915c590afc6fffc3ce3a5be1569" }, "colorspace": { "Package": "colorspace", @@ -585,20 +585,20 @@ }, "commonmark": { "Package": "commonmark", - "Version": "1.9.0", + "Version": "1.9.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "d691c61bff84bd63c383874d2d0c3307" + "Hash": "5d8225445acb167abf7797de48b2ee3c" }, "config": { "Package": "config", - "Version": "0.3.1", + "Version": "0.3.2", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "yaml" ], - "Hash": "31d77b09f63550cee9ecb5a08bf76e8f" + "Hash": "8b7222e9d9eb5178eea545c0c4d33fc2" }, "conflicted": { "Package": "conflicted", @@ -615,7 +615,7 @@ }, "cowplot": { "Package": "cowplot", - "Version": "1.1.1", + "Version": "1.1.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -628,7 +628,7 @@ "rlang", "scales" ], - "Hash": "b418e8423699d11c7f2087c2bfd07da2" + "Hash": "8ef2084dd7d28847b374e55440e4f8cb" }, "cpp11": { "Package": "cpp11", @@ -667,24 +667,24 @@ }, "curl": { "Package": "curl", - "Version": "5.1.0", + "Version": "5.2.0", "Source": "Repository", - "Repository": "CRAN", + "Repository": "https://carpentries.r-universe.dev", "Requirements": [ "R" ], - "Hash": "9123f3ef96a2c1a93927d828b2fe7d4c" + "Hash": "ce88d13c0b10fe88a37d9c59dba2d7f9" }, "data.table": { "Package": "data.table", - "Version": "1.14.8", + "Version": "1.15.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "methods" ], - "Hash": "b4c06e554f33344e044ccd7fdca750a9" + "Hash": "cfbbb4aed6e78cd45f17123a9ec9981a" }, "dbplyr": { "Package": "dbplyr", @@ -742,28 +742,27 @@ }, "desc": { "Package": "desc", - "Version": "1.4.2", + "Version": "1.4.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "R6", "cli", - "rprojroot", "utils" ], - "Hash": "6b9602c7ebbe87101a9c8edb6e8b6d21" + "Hash": "99b79fcbd6c4d1ce087f5c5c758b384f" }, "digest": { "Package": "digest", - "Version": "0.6.33", + "Version": "0.6.34", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "utils" ], - "Hash": "b18a9cf3c003977b0cc49d5e76ebe48d" + "Hash": "7ede2ee9ea8d3edbf1ca84c1e333ad1a" }, "distcrete": { "Package": "distcrete", @@ -794,7 +793,7 @@ }, "dplyr": { "Package": "dplyr", - "Version": "1.1.2", + "Version": "1.1.4", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -813,7 +812,7 @@ "utils", "vctrs" ], - "Hash": "dea6970ff715ca541c387de363ff405e" + "Hash": "fedd9d00c2944ff00a0e2696ccf048ec" }, "dtplyr": { "Package": "dtplyr", @@ -836,7 +835,7 @@ }, "e1071": { "Package": "e1071", - "Version": "1.7-13", + "Version": "1.7-14", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -848,7 +847,7 @@ "stats", "utils" ], - "Hash": "1046cb48d06cb40c2900d8878f03a0fe" + "Hash": "4ef372b716824753719a8a38b258442d" }, "ellipsis": { "Package": "ellipsis", @@ -866,11 +865,11 @@ "Version": "0.2", "Source": "GitHub", "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteRepo": "epiCo", "RemoteUsername": "epiverse-trace", + "RemoteRepo": "epiCo", "RemoteRef": "HEAD", - "RemoteSha": "c9e5bcad281d004d3162fadc0ba64480a4ec9184", + "RemoteSha": "f85e5d08184fbdc00bf2b7b5d78ff7effd6872c8", + "RemoteHost": "api.github.com", "Requirements": [ "R", "RColorBrewer", @@ -887,7 +886,7 @@ "treemapify", "utils" ], - "Hash": "68472ddd9d266c23ec600bc2fab0a0e6" + "Hash": "3daadc5381c75be4a8c3044b1eac3ea1" }, "epicontacts": { "Package": "epicontacts", @@ -942,7 +941,7 @@ }, "fansi": { "Package": "fansi", - "Version": "1.0.4", + "Version": "1.0.6", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -950,7 +949,7 @@ "grDevices", "utils" ], - "Hash": "1d9e7ad3c8312a192dea7d3db0274fde" + "Hash": "962174cf2aeb5b9eea581522286a911f" }, "farver": { "Package": "farver", @@ -1068,18 +1067,19 @@ }, "ggfittext": { "Package": "ggfittext", - "Version": "0.10.1", + "Version": "0.10.2", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", + "cli", "ggplot2", "grid", "gridtext", "shades", "stringi" ], - "Hash": "971abd943dd56877fc3dc2ce56991385" + "Hash": "d8f6698dff551267fc335b9768cda008" }, "ggplot2": { "Package": "ggplot2", @@ -1108,7 +1108,7 @@ }, "ggridges": { "Package": "ggridges", - "Version": "0.5.4", + "Version": "0.5.6", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1118,18 +1118,18 @@ "scales", "withr" ], - "Hash": "c76ee8fe60939384b9726128e38caea0" + "Hash": "66488692cb8621bc78df1b9b819497a6" }, "glue": { "Package": "glue", - "Version": "1.6.2", + "Version": "1.7.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "methods" ], - "Hash": "4f2596dfb05dac67b9dc558e5c6fba2e" + "Hash": "e0b3a53876554bd45879e596cdb10a52" }, "googledrive": { "Package": "googledrive", @@ -1316,7 +1316,7 @@ }, "htmlwidgets": { "Package": "htmlwidgets", - "Version": "1.6.3", + "Version": "1.6.4", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1327,7 +1327,7 @@ "rmarkdown", "yaml" ], - "Hash": "a4040b08269c9af64554e55f514d002c" + "Hash": "04291cc45198225444a397606810ac37" }, "httr": { "Package": "httr", @@ -1344,6 +1344,27 @@ ], "Hash": "ac107251d9d9fd72f0ca8049988f1d7f" }, + "httr2": { + "Package": "httr2", + "Version": "1.0.0", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R", + "R6", + "cli", + "curl", + "glue", + "lifecycle", + "magrittr", + "openssl", + "rappdirs", + "rlang", + "vctrs", + "withr" + ], + "Hash": "e2b30f1fc039a0bab047dd52bb20ef71" + }, "ids": { "Package": "ids", "Version": "1.0.1", @@ -1357,7 +1378,7 @@ }, "igraph": { "Package": "igraph", - "Version": "1.5.1", + "Version": "2.0.1.1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1375,7 +1396,7 @@ "stats", "utils" ], - "Hash": "80401cb5ec513e8ddc56764d03f63669" + "Hash": "fb2999614d40fe7fd61cf569b66a2dbc" }, "incidence": { "Package": "incidence", @@ -1431,13 +1452,13 @@ }, "jsonlite": { "Package": "jsonlite", - "Version": "1.8.7", + "Version": "1.8.8", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "methods" ], - "Hash": "266a20443ca13c65688b2116d5220f76" + "Hash": "e1b9c55281c5adc4dd113652d9e26768" }, "knitr": { "Package": "knitr", @@ -1577,27 +1598,9 @@ ], "Hash": "7ce2733a9826b3aeb1775d56fd305472" }, - "maptools": { - "Package": "maptools", - "Version": "1.1-6", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "foreign", - "grDevices", - "grid", - "lattice", - "methods", - "sp", - "stats", - "utils" - ], - "Hash": "cd65b7fe71f03fca368a1e93db5ed91b" - }, "markdown": { "Package": "markdown", - "Version": "1.11", + "Version": "1.12", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1606,17 +1609,17 @@ "utils", "xfun" ], - "Hash": "82b8d62b5451f8adea7d11a99dfea633" + "Hash": "765cf53992401b3b6c297b69e1edb8bd" }, "matrixStats": { "Package": "matrixStats", - "Version": "1.1.0", + "Version": "1.2.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R" ], - "Hash": "68d317093459a3f0852b1dd52d9e1ea6" + "Hash": "33a3ca9e732b57244d14f5d732ffc9eb" }, "mcmc": { "Package": "mcmc", @@ -1642,7 +1645,7 @@ }, "mgcv": { "Package": "mgcv", - "Version": "1.9-0", + "Version": "1.9-1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1655,7 +1658,7 @@ "stats", "utils" ], - "Hash": "086028ca0460d0c368028d3bda58f31b" + "Hash": "110ee9d83b496279960e162ac97764ce" }, "mime": { "Package": "mime", @@ -1742,9 +1745,21 @@ ], "Hash": "2a0dc8c6adfb6f032e4d4af82d258ab5" }, + "pak": { + "Package": "pak", + "Version": "0.7.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "tools", + "utils" + ], + "Hash": "17c4c32b4bdc087508f35e8b7dcf4191" + }, "patchwork": { "Package": "patchwork", - "Version": "1.1.3", + "Version": "1.2.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1758,7 +1773,7 @@ "stats", "utils" ], - "Hash": "c5754106c02e8e019941100c81149431" + "Hash": "9c8ab14c00ac07e9e04d1664c0b74486" }, "pillar": { "Package": "pillar", @@ -1779,7 +1794,7 @@ }, "pkgbuild": { "Package": "pkgbuild", - "Version": "1.4.2", + "Version": "1.4.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1787,13 +1802,10 @@ "R6", "callr", "cli", - "crayon", "desc", - "prettyunits", - "processx", - "rprojroot" + "processx" ], - "Hash": "beb25b32a957a22a5c301a9e441190b3" + "Hash": "c0143443203205e6a2760ce553dafc24" }, "pkgconfig": { "Package": "pkgconfig", @@ -1874,7 +1886,7 @@ }, "processx": { "Package": "processx", - "Version": "3.8.2", + "Version": "3.8.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1883,20 +1895,21 @@ "ps", "utils" ], - "Hash": "3efbd8ac1be0296a46c55387aeace0f3" + "Hash": "82d48b1aec56084d9438dbf98087a7e9" }, "progress": { "Package": "progress", - "Version": "1.2.2", + "Version": "1.2.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ + "R", "R6", "crayon", "hms", "prettyunits" ], - "Hash": "14dc9f7a3c91ebb14ec5bb9208a07061" + "Hash": "f4625e061cb2865f111b47ff163a5ca6" }, "proxy": { "Package": "proxy", @@ -1912,18 +1925,18 @@ }, "ps": { "Package": "ps", - "Version": "1.7.5", + "Version": "1.7.6", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "utils" ], - "Hash": "709d852d33178db54b17c722e5b1e594" + "Hash": "dd2b9319ee0656c8acf45c7f40c59de7" }, "purrr": { "Package": "purrr", - "Version": "1.0.1", + "Version": "1.0.2", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1934,7 +1947,7 @@ "rlang", "vctrs" ], - "Hash": "d71c815267c640f17ddbf7f16144b4bb" + "Hash": "1cba04a4e9414bdefc9dcaa99649a8dc" }, "qcc": { "Package": "qcc", @@ -1970,14 +1983,14 @@ }, "ragg": { "Package": "ragg", - "Version": "1.2.6", + "Version": "1.2.7", "Source": "Repository", - "Repository": "CRAN", + "Repository": "https://carpentries.r-universe.dev", "Requirements": [ "systemfonts", "textshaping" ], - "Hash": "6ba2fa8740abdc2cc148407836509901" + "Hash": "90a1b8b7e518d7f90480d56453b4d062" }, "rappdirs": { "Package": "rappdirs", @@ -2005,7 +2018,7 @@ }, "readr": { "Package": "readr", - "Version": "2.1.4", + "Version": "2.1.5", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2024,7 +2037,7 @@ "utils", "vroom" ], - "Hash": "b5047343b3825f37ad9d3b5d89aa1078" + "Hash": "9de96463d2117f6ac49980577939dfb3" }, "readxl": { "Package": "readxl", @@ -2070,7 +2083,7 @@ }, "reprex": { "Package": "reprex", - "Version": "2.0.2", + "Version": "2.1.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2088,7 +2101,7 @@ "utils", "withr" ], - "Hash": "d66fe009d4c20b7ab1927eb405db9ee2" + "Hash": "1425f91b4d5d9a8f25352c44a3d914ed" }, "reshape2": { "Package": "reshape2", @@ -2103,32 +2116,16 @@ ], "Hash": "bb5996d0bd962d214a11140d77589917" }, - "rgdal": { - "Package": "rgdal", - "Version": "1.6-5", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "grDevices", - "graphics", - "methods", - "sp", - "stats", - "utils" - ], - "Hash": "db30ee59b46241355b2da9620f591243" - }, "rlang": { "Package": "rlang", - "Version": "1.1.1", + "Version": "1.1.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "utils" ], - "Hash": "a85c767b55f0bf9b7ad16c6d7baee5bb" + "Hash": "42548638fae05fd9a9b5f3f437fbbbe2" }, "rmarkdown": { "Package": "rmarkdown", @@ -2156,7 +2153,7 @@ }, "rpart": { "Package": "rpart", - "Version": "4.1.21", + "Version": "4.1.23", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2165,21 +2162,11 @@ "graphics", "stats" ], - "Hash": "d5bc1a16e01e50e08581f0c362d3955d" - }, - "rprojroot": { - "Package": "rprojroot", - "Version": "2.0.4", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R" - ], - "Hash": "4c8415e0ec1e29f3f4f6fc108bef0144" + "Hash": "b3d390424f41d04174cccf84d49676c2" }, "rstan": { "Package": "rstan", - "Version": "2.32.3", + "Version": "2.32.5", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2198,11 +2185,11 @@ "pkgbuild", "stats4" ], - "Hash": "4ac5b7639d28cd4fab19baaf46f33c6a" + "Hash": "378a10b6373822761ec78021c105b059" }, "rstantools": { "Package": "rstantools", - "Version": "2.3.1.1", + "Version": "2.4.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2212,7 +2199,7 @@ "stats", "utils" ], - "Hash": "32d3b6fe28162eb1c430697f95f40a83" + "Hash": "23813e635fcd210c33e154aa46d0a21a" }, "rstudioapi": { "Package": "rstudioapi", @@ -2243,7 +2230,7 @@ }, "s2": { "Package": "s2", - "Version": "1.1.4", + "Version": "1.1.6", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2251,11 +2238,11 @@ "Rcpp", "wk" ], - "Hash": "f1cbe03bb3346f8e817518ffa20f9f5a" + "Hash": "32f7b1a15bb01ae809022960abad5363" }, "sass": { "Package": "sass", - "Version": "0.4.7", + "Version": "0.4.8", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2265,7 +2252,7 @@ "rappdirs", "rlang" ], - "Hash": "6bd4d33b50ff927191ec9acbf52fd056" + "Hash": "168f9353c76d4c4b0a0bbf72e2c2d035" }, "scales": { "Package": "scales", @@ -2305,11 +2292,11 @@ "Version": "0.0.9", "Source": "GitHub", "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteRepo": "serofoi", "RemoteUsername": "epiverse-trace", + "RemoteRepo": "serofoi", "RemoteRef": "HEAD", - "RemoteSha": "4a25b1042a1c043c783a2107e3562f3654eec00a", + "RemoteSha": "f383927777d16a26486a0f2aa04454cda2e27879", + "RemoteHost": "api.github.com", "Requirements": [ "BH", "Hmisc", @@ -2330,11 +2317,11 @@ "rstan", "rstantools" ], - "Hash": "b297307e749fd759f0480d77ec0f8174" + "Hash": "1bd80aea7d99aa91a3283c5c3b37cd09" }, "sf": { "Package": "sf", - "Version": "1.0-14", + "Version": "1.0-15", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2353,7 +2340,7 @@ "units", "utils" ], - "Hash": "e2111252a76984ca50bf8d6314348681" + "Hash": "f432b3379fb1a47046e253468b6b6b6d" }, "shades": { "Package": "shades", @@ -2362,29 +2349,56 @@ "Repository": "CRAN", "Hash": "3a2cf5eecb2cbca814d01d56bfb51494" }, + "showtext": { + "Package": "showtext", + "Version": "0.9-6", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "grDevices", + "showtextdb", + "sysfonts" + ], + "Hash": "c0fd332d248b195bbcb94a0dfda37b0d" + }, + "showtextdb": { + "Package": "showtextdb", + "Version": "3.0", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "sysfonts", + "utils" + ], + "Hash": "c12e756cf947e58b0f2c2a520521a5a8" + }, "sivirep": { "Package": "sivirep", - "Version": "0.0.1.0", + "Version": "0.0.2.0", "Source": "GitHub", "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteRepo": "sivirep", "RemoteUsername": "epiverse-trace", + "RemoteRepo": "sivirep", "RemoteRef": "dev", - "RemoteSha": "837948a2ca48235b3a7138f40ac419bedce7df62", + "RemoteSha": "f66542c3004b4d3a8acf4d93710f756a65023697", + "RemoteHost": "api.github.com", "Requirements": [ + "R", "config", - "data.table", + "cowplot", "dplyr", "epitrix", "ggplot2", - "httr", - "maptools", - "rgdal", + "gridExtra", + "httr2", + "readxl", + "sf", + "showtext", "stringr", + "sysfonts", "xml2" ], - "Hash": "add98fb828bf251ab5fdad304e8e3111" + "Hash": "9ee3cee98d178e15aa7e018c998780b5" }, "sodium": { "Package": "sodium", @@ -2395,7 +2409,7 @@ }, "sp": { "Package": "sp", - "Version": "2.0-0", + "Version": "2.1-3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2408,7 +2422,7 @@ "stats", "utils" ], - "Hash": "2551981e6f85d59c81652bf654d6c3ca" + "Hash": "1a0cc0cec2915700e63fd0921085cf6a" }, "spData": { "Package": "spData", @@ -2446,16 +2460,16 @@ }, "stringi": { "Package": "stringi", - "Version": "1.8.2", + "Version": "1.8.3", "Source": "Repository", - "Repository": "CRAN", + "Repository": "https://carpentries.r-universe.dev", "Requirements": [ "R", "stats", "tools", "utils" ], - "Hash": "e68c45f81639001af5f1b15cd3599bbd" + "Hash": "058aebddea264f4c99401515182e656a" }, "stringr": { "Package": "stringr", @@ -2497,6 +2511,13 @@ "Repository": "CRAN", "Hash": "3a1be13d68d47a8cd0bfd74739ca1555" }, + "sysfonts": { + "Package": "sysfonts", + "Version": "0.8.8", + "Source": "Repository", + "Repository": "RSPM", + "Hash": "7f4dac41a3e348ae12832167e6beb875" + }, "systemfonts": { "Package": "systemfonts", "Version": "1.0.5", @@ -2510,18 +2531,18 @@ }, "tensorA": { "Package": "tensorA", - "Version": "0.36.2", + "Version": "0.36.2.1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "stats" ], - "Hash": "fd792ceac77f96b647fa8d6e1788969a" + "Hash": "0d587599172f2ffda2c09cb6b854e0e5" }, "terra": { "Package": "terra", - "Version": "1.7-55", + "Version": "1.7-71", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2529,7 +2550,7 @@ "Rcpp", "methods" ], - "Hash": "c011cc748506148c793428eb8ec101f9" + "Hash": "e8611881ab70a4fb7a1f629b31e6fcff" }, "textshaping": { "Package": "textshaping", @@ -2580,7 +2601,7 @@ }, "tidyr": { "Package": "tidyr", - "Version": "1.3.0", + "Version": "1.3.1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2599,7 +2620,7 @@ "utils", "vctrs" ], - "Hash": "e47debdc7ce599b070c8e78e8ac0cfcf" + "Hash": "915fb7ce036c22a6a33b5a8adb712eb1" }, "tidyselect": { "Package": "tidyselect", @@ -2659,14 +2680,14 @@ }, "timechange": { "Package": "timechange", - "Version": "0.2.0", + "Version": "0.3.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "cpp11" ], - "Hash": "8548b44f79a35ba1791308b61e6012d7" + "Hash": "c5f3c201b931cd6474d17d8700ccb1c8" }, "tinytex": { "Package": "tinytex", @@ -2716,44 +2737,23 @@ }, "utf8": { "Package": "utf8", - "Version": "1.2.3", + "Version": "1.2.4", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R" ], - "Hash": "1fe17157424bb09c48a8b3b550c753bc" + "Hash": "62b65c52671e6665f803ff02954446e9" }, "uuid": { "Package": "uuid", - "Version": "1.1-1", + "Version": "1.2-0", "Source": "Repository", - "Repository": "RSPM", + "Repository": "CRAN", "Requirements": [ "R" ], - "Hash": "3d78edfb977a69fc7a0341bee25e163f" - }, - "vaccineff": { - "Package": "vaccineff", - "Version": "0.0.1", - "Source": "GitHub", - "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteUsername": "epiverse-trace", - "RemoteRepo": "vaccineff", - "RemoteRef": "main", - "RemoteSha": "666ddf4f1272f835f0faaed796ed2aa824c63946", - "Requirements": [ - "R", - "checkmate", - "ggplot2", - "rlang", - "scales", - "stats", - "survival" - ], - "Hash": "dff57d6aacd7046dca5edd79fdebb552" + "Hash": "303c19bfd970bece872f93a824e323d9" }, "vctrs": { "Package": "vctrs", @@ -2771,7 +2771,7 @@ }, "viridis": { "Package": "viridis", - "Version": "0.6.4", + "Version": "0.6.5", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2780,7 +2780,7 @@ "gridExtra", "viridisLite" ], - "Hash": "80cd127bc8c9d3d9f0904ead9a9102f1" + "Hash": "acd96d9fa70adeea4a5a1150609b9745" }, "viridisLite": { "Package": "viridisLite", @@ -2812,7 +2812,7 @@ }, "vroom": { "Package": "vroom", - "Version": "1.6.4", + "Version": "1.6.5", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -2834,20 +2834,19 @@ "vctrs", "withr" ], - "Hash": "9db52c1656cf19c124f93124ea57f0fd" + "Hash": "390f9315bc0025be03012054103d227c" }, "withr": { "Package": "withr", - "Version": "2.5.2", + "Version": "3.0.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "grDevices", - "graphics", - "stats" + "graphics" ], - "Hash": "4b25e70111b7d644322e9513f403a272" + "Hash": "d31b6c62c10dcf11ec530ca6b0dd5d35" }, "wk": { "Package": "wk", @@ -2861,32 +2860,34 @@ }, "xfun": { "Package": "xfun", - "Version": "0.40", + "Version": "0.41", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "stats", "tools" ], - "Hash": "be07d23211245fc7d4209f54c4e4ffc8" + "Hash": "460a5e0fe46a80ef87424ad216028014" }, "xml2": { "Package": "xml2", - "Version": "1.3.5", + "Version": "1.3.6", "Source": "Repository", - "Repository": "CRAN", + "Repository": "https://carpentries.r-universe.dev", "Requirements": [ "R", - "methods" + "cli", + "methods", + "rlang" ], - "Hash": "6c40e5cfcc6aefd88110666e18c31f40" + "Hash": "1d0336142f4cd25d8d23cd3ba7a8fb61" }, "yaml": { "Package": "yaml", - "Version": "2.3.7", + "Version": "2.3.8", "Source": "Repository", "Repository": "CRAN", - "Hash": "0d0056cc5383fbc240ccd0cb584bf436" + "Hash": "29240487a071f535f5e5d5a323b7afbd" } } }