From 421eda63a03ff1dfec6905ba74e8293f8f41fd2d Mon Sep 17 00:00:00 2001
From: Andree Valle Campos <avallecam@gmail.com>
Date: Tue, 28 Nov 2023 23:09:15 +0000
Subject: [PATCH] amend previous renv

---
 renv/profiles/lesson-requirements/renv.lock | 1395 ++++---------------
 1 file changed, 254 insertions(+), 1141 deletions(-)

diff --git a/renv/profiles/lesson-requirements/renv.lock b/renv/profiles/lesson-requirements/renv.lock
index 3902773..e357888 100644
--- a/renv/profiles/lesson-requirements/renv.lock
+++ b/renv/profiles/lesson-requirements/renv.lock
@@ -1,6 +1,6 @@
 {
   "R": {
-    "Version": "4.3.1",
+    "Version": "4.2.2",
     "Repositories": [
       {
         "Name": "carpentries",
@@ -17,70 +17,50 @@
     ]
   },
   "Packages": {
-    "BH": {
-      "Package": "BH",
-      "Version": "1.81.0-1",
+    "EpiEstim": {
+      "Package": "EpiEstim",
+      "Version": "2.2-4",
       "Source": "Repository",
-      "Repository": "CRAN",
-      "Hash": "68122010f01c4dcfbe58ce7112f2433d"
-    },
-    "DBI": {
-      "Package": "DBI",
-      "Version": "1.1.3",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "methods"
-      ],
-      "Hash": "b2866e62bab9378c3cc9476a1954226b"
+      "Repository": "CRAN"
     },
-    "DiagrammeR": {
-      "Package": "DiagrammeR",
-      "Version": "1.0.10",
+    "MASS": {
+      "Package": "MASS",
+      "Version": "7.3-60",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
-        "RColorBrewer",
-        "downloader",
-        "dplyr",
-        "glue",
-        "htmltools",
-        "htmlwidgets",
-        "igraph",
-        "magrittr",
-        "purrr",
-        "readr",
-        "rlang",
-        "rstudioapi",
-        "scales",
-        "stringr",
-        "tibble",
-        "tidyr",
-        "viridis",
-        "visNetwork"
+        "grDevices",
+        "graphics",
+        "methods",
+        "stats",
+        "utils"
       ],
-      "Hash": "f3de4a4878163a4629a528bbcc6e655d"
+      "Hash": "a56a6365b3fa73293ea8d084be0d9bb0"
     },
-    "MASS": {
-      "Package": "MASS",
-      "Version": "7.3-60",
+    "MCMCpack": {
+      "Package": "MCMCpack",
+      "Version": "1.6-3",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
+        "MASS",
         "R",
+        "coda",
         "grDevices",
         "graphics",
+        "lattice",
+        "mcmc",
         "methods",
+        "quantreg",
         "stats",
         "utils"
       ],
-      "Hash": "a56a6365b3fa73293ea8d084be0d9bb0"
+      "Hash": "520335edba1c95a90eec54d693727723"
     },
     "Matrix": {
       "Package": "Matrix",
-      "Version": "1.6-1.1",
+      "Version": "1.6-3",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -93,13 +73,26 @@
         "stats",
         "utils"
       ],
-      "Hash": "1a00d4828f33a9d690806e98bd17150c"
+      "Hash": "1d1b6901cf9b6b1b446bc56a7d47efa4"
+    },
+    "MatrixModels": {
+      "Package": "MatrixModels",
+      "Version": "0.5-3",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "Matrix",
+        "R",
+        "methods",
+        "stats"
+      ],
+      "Hash": "0776bf7526869e0286b0463cb72fb211"
     },
     "R6": {
       "Package": "R6",
       "Version": "2.5.1",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
@@ -126,117 +119,55 @@
       ],
       "Hash": "ae6cbbe1492f4de79c45fce06f967ce8"
     },
-    "RcppEigen": {
-      "Package": "RcppEigen",
-      "Version": "0.3.3.9.3",
+    "SparseM": {
+      "Package": "SparseM",
+      "Version": "1.81",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
-        "Matrix",
         "R",
-        "Rcpp",
+        "graphics",
+        "methods",
         "stats",
         "utils"
       ],
-      "Hash": "1e035db628cefb315c571202d70202fe"
+      "Hash": "2042cd9759cc89a453c4aefef0ce9aae"
     },
-    "askpass": {
-      "Package": "askpass",
-      "Version": "1.2.0",
+    "abind": {
+      "Package": "abind",
+      "Version": "1.4-5",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
-        "sys"
+        "R",
+        "methods",
+        "utils"
       ],
-      "Hash": "cad6cf7f1d5f6e906700b9d3e718c796"
+      "Hash": "4f57884290cc75ab22f4af9e9d4ca862"
     },
-    "backports": {
-      "Package": "backports",
-      "Version": "1.4.1",
+    "aweek": {
+      "Package": "aweek",
+      "Version": "1.0.3",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
-      "Hash": "c39fbec8a30d23e721980b8afb31984c"
+      "Hash": "2e8a6ececc90206ceea48eea1d3f99ef"
     },
     "base64enc": {
       "Package": "base64enc",
       "Version": "0.1-3",
       "Source": "Repository",
-      "Repository": "RSPM",
-      "Requirements": [
-        "R"
-      ],
-      "Hash": "543776ae6848fde2f48ff3816d0628bc"
-    },
-    "bit": {
-      "Package": "bit",
-      "Version": "4.0.5",
-      "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
-      "Hash": "d242abec29412ce988848d0294b208fd"
-    },
-    "bit64": {
-      "Package": "bit64",
-      "Version": "4.0.5",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "bit",
-        "methods",
-        "stats",
-        "utils"
-      ],
-      "Hash": "9fe98599ca456d6552421db0d6772d8f"
-    },
-    "blob": {
-      "Package": "blob",
-      "Version": "1.2.4",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "methods",
-        "rlang",
-        "vctrs"
-      ],
-      "Hash": "40415719b5a479b87949f3aa0aee737c"
-    },
-    "brio": {
-      "Package": "brio",
-      "Version": "1.1.3",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Hash": "976cf154dfb043c012d87cddd8bca363"
-    },
-    "broom": {
-      "Package": "broom",
-      "Version": "1.0.5",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "backports",
-        "dplyr",
-        "ellipsis",
-        "generics",
-        "glue",
-        "lifecycle",
-        "purrr",
-        "rlang",
-        "stringr",
-        "tibble",
-        "tidyr"
-      ],
-      "Hash": "fd25391c3c4f6ecf0fa95f1e6d15378c"
+      "Hash": "543776ae6848fde2f48ff3816d0628bc"
     },
     "bslib": {
       "Package": "bslib",
-      "Version": "0.5.1",
+      "Version": "0.6.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -247,12 +178,13 @@
         "htmltools",
         "jquerylib",
         "jsonlite",
+        "lifecycle",
         "memoise",
         "mime",
         "rlang",
         "sass"
       ],
-      "Hash": "283015ddfbb9d7bf15ea9f0b5698f0d9"
+      "Hash": "fac047b773ad75cea6e2a25214b09ca0"
     },
     "cachem": {
       "Package": "cachem",
@@ -265,63 +197,41 @@
       ],
       "Hash": "c35768291560ce302c0a6589f92e837d"
     },
-    "callr": {
-      "Package": "callr",
-      "Version": "3.7.3",
+    "cli": {
+      "Package": "cli",
+      "Version": "3.6.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
-        "R6",
-        "processx",
         "utils"
       ],
-      "Hash": "9b2191ede20fa29828139b9900922e51"
-    },
-    "cellranger": {
-      "Package": "cellranger",
-      "Version": "1.1.0",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "rematch",
-        "tibble"
-      ],
-      "Hash": "f61dbaec772ccd2e17705c1e872e9e7c"
+      "Hash": "89e6d8219950eac806ae0c489052048a"
     },
-    "checkmate": {
-      "Package": "checkmate",
-      "Version": "2.2.0",
+    "coarseDataTools": {
+      "Package": "coarseDataTools",
+      "Version": "0.6-6",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
+        "MCMCpack",
         "R",
-        "backports",
-        "utils"
+        "graphics",
+        "methods",
+        "stats"
       ],
-      "Hash": "ca9c113196136f4a9ca9ce6079c2c99e"
+      "Hash": "9d6ff9107abae9d4a0d32874e2f1bff2"
     },
-    "cli": {
-      "Package": "cli",
-      "Version": "3.6.1",
+    "coda": {
+      "Package": "coda",
+      "Version": "0.19-4",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
-        "utils"
-      ],
-      "Hash": "89e6d8219950eac806ae0c489052048a"
-    },
-    "clipr": {
-      "Package": "clipr",
-      "Version": "0.8.0",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "utils"
+        "lattice"
       ],
-      "Hash": "3f038e5ac7f41d4ac41ce658c85e3042"
+      "Hash": "24b6d006b8b2343876cf230687546932"
     },
     "colorspace": {
       "Package": "colorspace",
@@ -337,29 +247,6 @@
       ],
       "Hash": "f20c47fd52fae58b4e377c37bb8c335b"
     },
-    "conflicted": {
-      "Package": "conflicted",
-      "Version": "1.2.0",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "cli",
-        "memoise",
-        "rlang"
-      ],
-      "Hash": "bb097fccb22d156624fd07cd2894ddb6"
-    },
-    "countrycode": {
-      "Package": "countrycode",
-      "Version": "1.5.0",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R"
-      ],
-      "Hash": "bbc5ab5258e5ddf38f2cd2c5a7afa860"
-    },
     "cpp11": {
       "Package": "cpp11",
       "Version": "0.4.6",
@@ -370,110 +257,6 @@
       ],
       "Hash": "707fae4bbf73697ec8d85f9d7076c061"
     },
-    "crayon": {
-      "Package": "crayon",
-      "Version": "1.5.2",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "grDevices",
-        "methods",
-        "utils"
-      ],
-      "Hash": "e8a1e41acf02548751f45c718d55aa6a"
-    },
-    "curl": {
-      "Package": "curl",
-      "Version": "5.1.0",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R"
-      ],
-      "Hash": "9123f3ef96a2c1a93927d828b2fe7d4c"
-    },
-    "data.table": {
-      "Package": "data.table",
-      "Version": "1.14.8",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "methods"
-      ],
-      "Hash": "b4c06e554f33344e044ccd7fdca750a9"
-    },
-    "dbplyr": {
-      "Package": "dbplyr",
-      "Version": "2.4.0",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "DBI",
-        "R",
-        "R6",
-        "blob",
-        "cli",
-        "dplyr",
-        "glue",
-        "lifecycle",
-        "magrittr",
-        "methods",
-        "pillar",
-        "purrr",
-        "rlang",
-        "tibble",
-        "tidyr",
-        "tidyselect",
-        "utils",
-        "vctrs",
-        "withr"
-      ],
-      "Hash": "59351f28a81f0742720b85363c4fdd61"
-    },
-    "deSolve": {
-      "Package": "deSolve",
-      "Version": "1.38",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "grDevices",
-        "graphics",
-        "methods",
-        "stats"
-      ],
-      "Hash": "860e6724c3bcdf194e8e043b97ab6f6e"
-    },
-    "desc": {
-      "Package": "desc",
-      "Version": "1.4.2",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "R6",
-        "cli",
-        "rprojroot",
-        "utils"
-      ],
-      "Hash": "6b9602c7ebbe87101a9c8edb6e8b6d21"
-    },
-    "diffobj": {
-      "Package": "diffobj",
-      "Version": "0.3.5",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "crayon",
-        "methods",
-        "stats",
-        "tools",
-        "utils"
-      ],
-      "Hash": "bcaa8b95f8d7d01a5dedfd959ce88ab8"
-    },
     "digest": {
       "Package": "digest",
       "Version": "0.6.33",
@@ -485,30 +268,16 @@
       ],
       "Hash": "b18a9cf3c003977b0cc49d5e76ebe48d"
     },
-    "dotCall64": {
-      "Package": "dotCall64",
-      "Version": "1.1-0",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R"
-      ],
-      "Hash": "7744a30055fea449fc7cd98323b5887c"
-    },
-    "downloader": {
-      "Package": "downloader",
-      "Version": "0.4",
+    "distcrete": {
+      "Package": "distcrete",
+      "Version": "1.0.3",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Requirements": [
-        "digest",
-        "utils"
-      ],
-      "Hash": "f4f2a915e0dedbdf016a83b63477349f"
+      "Hash": "5ad4e98af2a8e4c63b9b394ec05c91e1"
     },
     "dplyr": {
       "Package": "dplyr",
-      "Version": "1.1.3",
+      "Version": "1.1.4",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -527,73 +296,46 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "e85ffbebaad5f70e1a2e2ef4302b4949"
-    },
-    "dtplyr": {
-      "Package": "dtplyr",
-      "Version": "1.3.1",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "cli",
-        "data.table",
-        "dplyr",
-        "glue",
-        "lifecycle",
-        "rlang",
-        "tibble",
-        "tidyselect",
-        "vctrs"
-      ],
-      "Hash": "54ed3ea01b11e81a86544faaecfef8e2"
+      "Hash": "fedd9d00c2944ff00a0e2696ccf048ec"
     },
     "ellipsis": {
       "Package": "ellipsis",
       "Version": "0.3.2",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Requirements": [
         "R",
         "rlang"
       ],
       "Hash": "bb0eec2fe32e88d9e2836c2f73ea2077"
     },
-    "epidemics": {
-      "Package": "epidemics",
-      "Version": "0.0.0.9000",
-      "Source": "GitHub",
-      "RemoteType": "github",
-      "RemoteHost": "api.github.com",
-      "RemoteRepo": "epidemics",
-      "RemoteUsername": "epiverse-trace",
-      "RemotePkgRef": "epiverse-trace/epidemics",
-      "RemoteRef": "HEAD",
-      "RemoteSha": "6004c3a7e50be7b127070c4e96a011630307df17",
-      "Requirements": [
-        "BH",
-        "Rcpp",
-        "RcppEigen",
-        "checkmate",
-        "data.table",
-        "deSolve",
-        "glue",
-        "jsonlite",
-        "stats",
-        "utils"
+    "epitrix": {
+      "Package": "epitrix",
+      "Version": "0.4.0",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "distcrete",
+        "dplyr",
+        "purrr",
+        "rlang",
+        "sodium",
+        "stringi",
+        "tidyr"
       ],
-      "Hash": "96a7b1457b8a5d89f146d0abf3de7eff"
+      "Hash": "999a2328b480a5a8e40930ae669b2478"
     },
     "evaluate": {
       "Package": "evaluate",
-      "Version": "0.22",
+      "Version": "0.23",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "methods"
       ],
-      "Hash": "66f39c7a21e03c4dcb2c2d21d738d603"
+      "Hash": "daf4a1246be12c1fa8c7705a0935c1a0"
     },
     "fansi": {
       "Package": "fansi",
@@ -621,47 +363,32 @@
       "Repository": "CRAN",
       "Hash": "f7736a18de97dea803bde0a2daaafb27"
     },
-    "fields": {
-      "Package": "fields",
-      "Version": "15.2",
+    "fitdistrplus": {
+      "Package": "fitdistrplus",
+      "Version": "1.1-11",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
+        "MASS",
         "R",
-        "maps",
+        "grDevices",
         "methods",
-        "spam",
-        "viridisLite"
+        "stats",
+        "survival"
       ],
-      "Hash": "66fa5a16464666772f4929f8f5b2fc71"
+      "Hash": "f40ef9686e85681a1ccbf33d9236aeb9"
     },
     "fontawesome": {
       "Package": "fontawesome",
-      "Version": "0.5.2",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "htmltools",
-        "rlang"
-      ],
-      "Hash": "c2efdd5f0bcd1ea861c2d4e2a883a67d"
-    },
-    "forcats": {
-      "Package": "forcats",
-      "Version": "1.0.0",
+      "Version": "0.5.2",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
-        "cli",
-        "glue",
-        "lifecycle",
-        "magrittr",
-        "rlang",
-        "tibble"
+        "htmltools",
+        "rlang"
       ],
-      "Hash": "1a0a9a3d5083d0d573c4214576f1e690"
+      "Hash": "c2efdd5f0bcd1ea861c2d4e2a883a67d"
     },
     "fs": {
       "Package": "fs",
@@ -674,38 +401,33 @@
       ],
       "Hash": "47b5f30c720c23999b913a1a635cf0bb"
     },
-    "gargle": {
-      "Package": "gargle",
-      "Version": "1.5.2",
+    "generics": {
+      "Package": "generics",
+      "Version": "0.1.3",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
-        "cli",
-        "fs",
-        "glue",
-        "httr",
-        "jsonlite",
-        "lifecycle",
-        "openssl",
-        "rappdirs",
-        "rlang",
-        "stats",
-        "utils",
-        "withr"
+        "methods"
       ],
-      "Hash": "fc0b272e5847c58cd5da9b20eedbd026"
+      "Hash": "15e9634c0fcd294799e9b2e929ed1b86"
     },
-    "generics": {
-      "Package": "generics",
-      "Version": "0.1.3",
+    "gghighlight": {
+      "Package": "gghighlight",
+      "Version": "0.4.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
-        "methods"
+        "dplyr",
+        "ggplot2",
+        "ggrepel",
+        "lifecycle",
+        "purrr",
+        "rlang",
+        "tibble"
       ],
-      "Hash": "15e9634c0fcd294799e9b2e929ed1b86"
+      "Hash": "7e3fff5855e54692875e6dd5600241de"
     },
     "ggplot2": {
       "Package": "ggplot2",
@@ -732,69 +454,32 @@
       ],
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@@ -1815,16 +1047,6 @@
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@@ -1947,40 +1082,18 @@
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