IDMP-735 - minor tweaks to the mapping #1245

	# This workflow will run spellchecking for IDMP project

	name: IDMP Spellcheck Test

	on:
	push:
	pull_request:
	branches: ["master"]

	permissions:
	contents: read

	jobs:
	spellcheck:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python 3.10
	uses: actions/setup-python@v5
	with:
	python-version: "3.10"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r etc/testing/spelling/requirements.txt
	- name: Install robot
	run: \|
	sudo wget --no-verbose -m -nH -nd -P /usr/bin https://raw.githubusercontent.com/ontodev/robot/master/bin/robot
	sudo wget --no-verbose -m -nH -nd -P /usr/bin https://github.com/ontodev/robot/releases/latest/download/robot.jar
	sudo chmod +x /usr/bin/robot
	- name: Merge all IDMP ontologies with robot
	run: \|
	robot merge --input AboutIDMPDev-ReferenceIndividuals.rdf --output AboutIDMPDev-ReferenceIndividuals.ttl --catalog /home/runner/work/idmp/idmp/catalog-v001.xml
	- name: Run spellchecker
	run: \|
	python etc/testing/spelling/onto_spellchecker.py --ontology /home/runner/work/idmp/idmp/AboutIDMPDev-ReferenceIndividuals.ttl --spell etc/testing/spelling/domain_specific_spellings.json --filter spec.pistoiaalliance.org
	if [ $? != 0 ];
	then
	exit $?
	fi
	- name: Archive logfile
	uses: actions/upload-artifact@v4
	if: always()
	with:
	name: logifle
	path: spellcheck_log.log

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