ci.yaml

name: ci
on:
  # Trigger the workflow on push to master or develop, except tag creation
  push:
    branches:
      - 'main'
      - 'develop'
  # Trigger the workflow on pull request
  pull_request: ~
  # Trigger the workflow manually
  workflow_dispatch: ~
  # Trigger after public PR approved for CI
  pull_request_target:
    types: [labeled]
  release:
    types: [created]
jobs:
  qa:
    name: qa
    runs-on: ubuntu-20.04
    steps:
      - name: Checkout Repository
        uses: actions/checkout@v3
        with:
          repository: ${{ inputs.repository }}
          ref: ${{ inputs.ref }}

      - name: Setup Python
        uses: actions/setup-python@v4
        with:
          python-version: ${{ inputs.python_version }}

      - name: Install Python Dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install black flake8 isort
      - name: Check isort
        run: isort --check .

      - name: Check black
        run: black --check .

      - name: Check flake8
        run: flake8 .
  setup:
    name: setup
    runs-on: ubuntu-20.04
    outputs:
      matrix: ${{ steps.set-matrix.outputs.matrix }}
      inputs: ${{ steps.prepare-inputs.outputs.inputs }}
      inputs-for-ubuntu: ${{ steps.prepare-inputs.outputs.inputs-for-ubuntu }}
    steps:
      - name: Set Matrix
        id: set-matrix
        shell: bash -eux {0}
        run: |
          MATRIX=$(cat << 'EOS'
          name:
          - gnu-11@ubuntu-22.04
          - clang-14@ubuntu-22.04
          include:
          - name: gnu-11@ubuntu-22.04
            os: ubuntu-22.04
            compiler: gnu-11
            compiler_cc: gcc-11
            compiler_cxx: g++-11
            compiler_fc: gfortran-11
          - name: clang-14@ubuntu-22.04
            os: ubuntu-22.04
            compiler: clang-14
            compiler_cc: clang-14
            compiler_cxx: clang++-14
            compiler_fc: gfortran-11
          # Xcode compiler requires empty environment variables, so we pass null (~) here
          EOS
          )
          SKIP_MATRIX_JOBS=$(cat << 'EOS'
          ${{ inputs.skip_matrix_jobs }}
          EOS
          )
          SELECT_NAME_COND="1 != 1"
          SELECT_INCLUDE_COND="1 != 1"
          for skip_job in $SKIP_MATRIX_JOBS; do SELECT_NAME_COND="$SELECT_NAME_COND or . == \"$skip_job\""; SELECT_INCLUDE_COND="$SELECT_INCLUDE_COND or .name == \"$skip_job\""; done
          echo matrix=$(echo "$MATRIX" | yq eval "del(.name[] | select($SELECT_NAME_COND)) | del(.include[] | select($SELECT_INCLUDE_COND))" --output-format json --indent 0 -) >> $GITHUB_OUTPUT
      - name: Prepare build-package Inputs
        id: prepare-inputs
        shell: bash -eux {0}
        run: |
          echo inputs=$(echo "${{ inputs.build_package_inputs || '{}' }}" | yq eval '.' --output-format json --indent 0 -) >> $GITHUB_OUTPUT
          echo inputs-for-ubuntu=$(echo "${{ inputs.build_package_inputs || '{}' }}" | yq eval '. * {"os":"ubuntu-20.04","compiler":"gnu-10","compiler_cc":"gcc-10","compiler_cxx":"g++-10","compiler_fc":"gfortran-10"}' --output-format json --indent 0 -) >> $GITHUB_OUTPUT
  test:
    name: test
    needs:
      - qa
      - setup
    strategy:
      fail-fast: false
      matrix: ${{ fromJson(needs.setup.outputs.matrix) }}
    runs-on: ${{ matrix.os }}
    steps:
      - uses: actions/checkout@v4
      - name: Setup Python
        uses: actions/setup-python@v4
        with:
          python-version: ${{ inputs.python_version }}

      - name: Install Python Dependencies
        run: |
          python -m pip install --upgrade pip
          pip install --upgrade pip setuptools wheel
          python -m pip install pytest pytest-cov
          python -m pip install -r requirements.txt 
          python -m pip install -r ./tests/requirements_test.txt

      - name: Verify Source Distribution
        shell: bash -eux {0}
        run: |
          python setup.py sdist
          python -m pip install dist/*
      - name: Run Tests with Repository Code
        env:
          LD_LIBRARY_PATH: ${{ steps.install-dependencies.outputs.lib_path }}
        shell: bash -eux {0}
        run: |
          DYLD_LIBRARY_PATH=${{ env.LD_LIBRARY_PATH }} python -m pytest -m "not data" tests --cov=./ --cov-report=xml
          python -m coverage report

      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v3
        with:
          files: coverage.xml
  deploy:
    needs: test
    if: ${{ github.event_name == 'release' }}
    name: Upload to Pypi
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      - name: Set up Python
        uses: actions/setup-python@v2
        with:
          python-version: '3.8'
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install setuptools wheel twine
      - name: Build and publish
        env:
          TWINE_USERNAME: "__token__"
          TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }}
        run: |
          python setup.py sdist
          twine upload dist/*