From 08d89d804df73de8201999cf612626106e7968d1 Mon Sep 17 00:00:00 2001 From: George Breyiannis Date: Wed, 17 Jan 2024 08:21:49 +0100 Subject: [PATCH 01/13] Update README.md Remove unused badges --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index f18c9bcb..2bd123a9 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ Framework for Sea Level Hydrodynamic simulations ================================================ -[![Documentation Status](https://readthedocs.org/projects/pyposeidon/badge/?version=latest)](https://pyposeidon.readthedocs.io/en/latest/?badge=latest) ![GitHub release (latest by date)](https://img.shields.io/github/v/release/ec-jrc/pyPoseidon) ![CI](https://github.com/ec-jrc/pyPoseidon/actions/workflows/conda_pip.yml/badge.svg) ![CI](https://github.com/ec-jrc/pyPoseidon/actions/workflows/conda_only.yml/badge.svg) ![CI](https://github.com/ec-jrc/pyPoseidon/actions/workflows/code_quality.yml/badge.svg) [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/ec-jrc/pyPoseidon/master?urlpath=%2Flab) +[![Documentation Status](https://readthedocs.org/projects/pyposeidon/badge/?version=latest)](https://pyposeidon.readthedocs.io/en/latest/?badge=latest) ![GitHub release (latest by date)](https://img.shields.io/github/v/release/ec-jrc/pyPoseidon) ![CI](https://github.com/ec-jrc/pyPoseidon/actions/workflows/conda_pip.yml/badge.svg) [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/ec-jrc/pyPoseidon/master?urlpath=%2Flab) This is a development project utilising multiple solvers (currently `DELFT3D` & `SCHISM`) for simulating sea level height (currently only storm surge). The purpose is to create a simple, portable and transparent way of setting up, running and analysing hydrodynamic computations through python scripts and Jupyter Notebooks (http://jupyter.org). See Notebooks in Tutorial/ for relevant prototypes. From 2a6db6677742b4f5aecca11d08f2cc21d64197cd Mon Sep 17 00:00:00 2001 From: George Breyiannis Date: Wed, 17 Jan 2024 08:22:26 +0100 Subject: [PATCH 02/13] Add hotstart option 1 in cast --- pyposeidon/utils/cast.py | 48 ++++++++++++++++++++++++++-------------- 1 file changed, 32 insertions(+), 16 deletions(-) diff --git a/pyposeidon/utils/cast.py b/pyposeidon/utils/cast.py index f96350d6..8a4b66b3 100644 --- a/pyposeidon/utils/cast.py +++ b/pyposeidon/utils/cast.py @@ -279,6 +279,8 @@ def run(self, **kwargs): copy = get_value(self, kwargs, "copy", False) + ihot = get_value(self, kwargs, "ihot", 1) + pwd = os.getcwd() self.origin = self.model.rpath @@ -336,7 +338,6 @@ def run(self, **kwargs): info["config_file"] = os.path.join(ppath, "param.nml") # update the properties - info["rdate"] = self.rdate info["start_date"] = self.sdate info["time_frame"] = self.time_frame @@ -362,7 +363,10 @@ def run(self, **kwargs): logger.debug("create restart file") # check for combine hotstart - hotout = int((self.sdate - self.rdate).total_seconds() / info["params"]["core"]["dt"]) + if ihot == 2: + hotout = int((self.sdate - self.rdate).total_seconds() / info["params"]["core"]["dt"]) + elif ihot == 1: + hotout = self.parameters["nhot_write"] logger.debug("hotout_it = {}".format(hotout)) # link restart file @@ -430,20 +434,32 @@ def run(self, **kwargs): logger.warning("meteo files present\n") # modify param file - rnday_new = (self.sdate - self.rdate).total_seconds() / (3600 * 24.0) + pd.to_timedelta( - self.time_frame - ).total_seconds() / (3600 * 24.0) - hotout_write = int(rnday_new * 24 * 3600 / info["params"]["core"]["dt"]) - info["parameters"].update( - { - "ihot": 2, - "rnday": rnday_new, - "start_hour": self.rdate.hour, - "start_day": self.rdate.day, - "start_month": self.rdate.month, - "start_year": self.rdate.year, - } - ) + if ihot == 2: + rnday_new = (self.sdate - self.rdate).total_seconds() / (3600 * 24.0) + pd.to_timedelta( + self.time_frame + ).total_seconds() / (3600 * 24.0) + hotout_write = int(rnday_new * 24 * 3600 / info["params"]["core"]["dt"]) + info["parameters"].update( + { + "ihot": 2, + "rnday": rnday_new, + "start_hour": self.rdate.hour, + "start_day": self.rdate.day, + "start_month": self.rdate.month, + "start_year": self.rdate.year, + } + ) + elif ihot == 1: + info["parameters"].update( + { + "ihot": 1, + "start_hour": self.sdate.hour, + "start_day": self.sdate.day, + "start_month": self.sdate.month, + "start_year": self.sdate.year, + } + ) + # else: m.config(output=True, **info) # save param.nml From 1fe314ce59d906d48c457bd102785f87370e1750 Mon Sep 17 00:00:00 2001 From: George Breyiannis Date: Sun, 21 Jan 2024 19:53:02 +0100 Subject: [PATCH 03/13] remove tg metadata from simulation station output --- pyposeidon/utils/post.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/pyposeidon/utils/post.py b/pyposeidon/utils/post.py index 8457bd0d..af69dc16 100644 --- a/pyposeidon/utils/post.py +++ b/pyposeidon/utils/post.py @@ -239,7 +239,8 @@ def to_thalassa(folder, **kwargs): output_path = os.path.join(rpath, filename) - vdata.to_netcdf(output_path) + # output sim data + vdata[["node", "ioc_code", "lat", "lon", "location", "elev_sim"]].to_netcdf(output_path) logger.info(f"..done with {filename} file\n") From 1dd50ccd7252a6dfc82eb297b34a1c5897eabb73 Mon Sep 17 00:00:00 2001 From: George Breyiannis Date: Sun, 21 Jan 2024 19:55:47 +0100 Subject: [PATCH 04/13] resolve #173 --- pyposeidon/schism.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/pyposeidon/schism.py b/pyposeidon/schism.py index 5dbbc799..aba57edc 100644 --- a/pyposeidon/schism.py +++ b/pyposeidon/schism.py @@ -1819,11 +1819,11 @@ def set_obs(self, **kwargs): stations.index += 1 stations["gindex"] = mesh_index try: - stations["location"] = self.obs.location.values - stations["provider_id"] = self.obs.ioc_code.values + stations["location"] = tgn.location.values + stations["provider_id"] = tgn.ioc_code.values stations["provider"] = "ioc" - stations["longitude"] = self.obs.longitude.values - stations["latitude"] = self.obs.latitude.values + stations["longitude"] = tgn.longitude.values + stations["latitude"] = tgn.latitude.values except: pass From 730d3427fbed0ab2f89e8d2a491388e3115fbcfa Mon Sep 17 00:00:00 2001 From: George Breyiannis Date: Sun, 21 Jan 2024 19:56:35 +0100 Subject: [PATCH 05/13] add skiprows argument to reading station output --- pyposeidon/schism.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/pyposeidon/schism.py b/pyposeidon/schism.py index aba57edc..2917af86 100644 --- a/pyposeidon/schism.py +++ b/pyposeidon/schism.py @@ -1901,9 +1901,11 @@ def get_station_sim_data(self, **kwargs): dstamp = kwargs.get("dstamp", self.rdate) + skiprows = kwargs.get("station_skiprows", 0) + dfs = [] for idx in vals.index: - obs = np.loadtxt(sfiles[idx]) + obs = np.loadtxt(sfiles[idx], skiprows=skiprows) df = pd.DataFrame(obs) df = df.set_index(0) df.index.name = "time" From cf32241afe93017a5028e56ae0019c7d2c246e61 Mon Sep 17 00:00:00 2001 From: George Breyiannis Date: Sun, 21 Jan 2024 19:59:26 +0100 Subject: [PATCH 06/13] Deal with schism bug in station output Manually set the time index of staout files Fix #174 --- pyposeidon/schism.py | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/pyposeidon/schism.py b/pyposeidon/schism.py index 2917af86..6640549f 100644 --- a/pyposeidon/schism.py +++ b/pyposeidon/schism.py @@ -1903,6 +1903,11 @@ def get_station_sim_data(self, **kwargs): skiprows = kwargs.get("station_skiprows", 0) + try: + dt = self.parameters["dt"] + except: + dt = self.params["core"]["dt"] + dfs = [] for idx in vals.index: obs = np.loadtxt(sfiles[idx], skiprows=skiprows) @@ -1910,7 +1915,10 @@ def get_station_sim_data(self, **kwargs): df = df.set_index(0) df.index.name = "time" df.columns.name = vals.loc[idx, "variable"] - df.index = pd.to_datetime(dstamp) + pd.to_timedelta(df.index, unit="S") + # deal with schism bug + ns = np.arange(1, df.shape[0] + 1) + df.index = pd.to_datetime(dstamp) + pd.to_timedelta(ns * dt, unit="S") + # df.index = pd.to_datetime(dstamp) + pd.to_timedelta(df.index, unit="S") pindex = pd.MultiIndex.from_product([df.T.columns, df.T.index]) r = pd.DataFrame(df.values.flatten(), index=pindex, columns=[vals.loc[idx, "variable"]]) From b70acbfb0c1ab000e61b290e8f5d47fc87346857 Mon Sep 17 00:00:00 2001 From: George Breyiannis Date: Sat, 6 Apr 2024 16:58:15 +0200 Subject: [PATCH 07/13] Update mesh.py add ncores kwarg, ability to load mesh file in xarray structure, fix a compatibility issue. --- pyposeidon/mesh.py | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/pyposeidon/mesh.py b/pyposeidon/mesh.py index a6fed855..e94538aa 100644 --- a/pyposeidon/mesh.py +++ b/pyposeidon/mesh.py @@ -2,6 +2,7 @@ Mesh module """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). @@ -191,6 +192,8 @@ def __init__(self, **kwargs): self.Dataset = mgmsh.read_msh(mesh_file, **kwargs) else: raise ValueError("Please define 'mesh_genarator' argument") + elif mesh_file.endswith(".nc"): + self.Dataset = xr.open_dataset(mesh_file) elif mesh_generator == "gmsh": if boundary is None: @@ -229,7 +232,7 @@ def read_file(hgrid, **kwargs): df.columns = ["data"] # extract number of elements, number of nodes - ni, nj = df.iloc[0].str.split()[0] + ni, nj = df.iloc[0].str.split().iloc[0] ni = int(ni) nj = int(nj) @@ -533,8 +536,10 @@ def validate(self, **kwargs): scribes = kwargs.get("scribes", -1) + ncores = kwargs.get("ncores", 1) + tools.create_schism_mpirun_script( - target_dir=path, cmd=bin_path, script_name="launchSchism.sh", ncores=1, scribes=scribes + target_dir=path, cmd=bin_path, script_name="launchSchism.sh", ncores=ncores, scribes=scribes ) proc = tools.execute_schism_mpirun_script(cwd=path) From 98120eda8ef524f5a008929c979ec99f7dcc8f06 Mon Sep 17 00:00:00 2001 From: George Breyiannis Date: Sat, 6 Apr 2024 17:00:01 +0200 Subject: [PATCH 08/13] towards adding a tiling feature --- pyposeidon/dem.py | 11 ++- pyposeidon/utils/fix.py | 112 ++++++++++++++++++++++++++---- pyposeidon/utils/global_bgmesh.py | 92 ++++++++++++++++++++---- 3 files changed, 187 insertions(+), 28 deletions(-) diff --git a/pyposeidon/dem.py b/pyposeidon/dem.py index fcd47595..683febc1 100644 --- a/pyposeidon/dem.py +++ b/pyposeidon/dem.py @@ -2,6 +2,7 @@ Dem module """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). @@ -20,7 +21,7 @@ import pyresample import xarray as xr -from pyposeidon.utils.fix import fix, resample +from pyposeidon.utils.fix import fix_dem, fix, resample from pyposeidon import tools NCORES = max(1, multiprocessing.cpu_count() - 1) @@ -87,7 +88,13 @@ def __init__(self, dem_source: str, **kwargs): self.adjust(coastline, **kwargs) def adjust(self, coastline, **kwargs): - self.Dataset, check, flag = fix(self.Dataset, coastline, **kwargs) + + tiles = kwargs.get("tiles", False) + + if tiles: + self.Dataset, check = fix_dem(self.Dataset, coastline, **kwargs) + else: + self.Dataset, check, flag = fix(self.Dataset, coastline, **kwargs) if not check: logger.warning("Adjusting dem failed, keeping original values\n") diff --git a/pyposeidon/utils/fix.py b/pyposeidon/utils/fix.py index 792f38b4..f781f2e9 100644 --- a/pyposeidon/utils/fix.py +++ b/pyposeidon/utils/fix.py @@ -2,6 +2,7 @@ Mesh adjustment functions """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). @@ -16,6 +17,9 @@ import xarray as xr import sys import os +import shutil +from glob import glob +from tqdm.auto import tqdm from pyposeidon.utils.coastfix import simplify # logging setup @@ -24,12 +28,82 @@ logger = logging.getLogger(__name__) +def get_tiles(data, chunks=None): + + # chuck + if chunks: + ilats = data.elevation.chunk({"longitude": chunks[0], "latitude": chunks[1]}).chunks[0] + ilons = data.elevation.chunk({"longitude": chunks[0], "latitude": chunks[1]}).chunks[1] + else: + ilats = data.elevation.chunk("auto").chunks[0] + ilons = data.elevation.chunk("auto").chunks[1] + + if len(ilons) == 1: + ilons = (int(ilons[0] / 2), int(ilons[0] / 2)) + + idx = [sum(ilons[:i]) for i in range(len(ilons) + 1)] + jdx = [sum(ilats[:i]) for i in range(len(ilats) + 1)] + + blon = list(zip(idx[:-1], idx[1:])) + blat = list(zip(jdx[:-1], jdx[1:])) + + perms = [(x, y) for x in blon for y in blat] + + return perms + + +def fix_dem(dem, coastline, buffer=0.0, **kwargs): + + perms = get_tiles(dem) + + i = 0 + check = True + + if not os.path.exists("./fixtmp/"): + os.makedirs("./fixtmp/") + + for (i1, i2), (j1, j2) in tqdm(perms, total=len(perms)): + + lon1 = dem.longitude.data[i1:i2][0] + lon2 = dem.longitude.data[i1:i2][-1] + lat1 = dem.latitude.data[j1:j2][0] + lat2 = dem.latitude.data[j1:j2][-1] + + # buffer lat/lon + blon1 = lon1 - buffer + blon2 = lon2 + buffer + blat1 = lat1 - buffer + blat2 = lat2 + buffer + + # de = dem.sel(lon=slice(blon1,blon2)).sel(lat=slice(blat1,blat2)) + de = dem_range(dem, blon1, blon2, blat1, blat2) + + de_, check_, flag = fix(de, coastline, **kwargs) + + ide = de_.sel(latitude=slice(lat1, lat2)).sel(longitude=slice(lon1, lon2)) + + ide.to_netcdf("./fixtmp/ide{:03d}.nc".format(i)) + i += 1 + + check = check and check_ + + ifiles = glob("./fixtmp/ide*") + + fdem = xr.open_mfdataset(ifiles) + + ##cleanup + shutil.rmtree("./fixtmp") + + return fdem, check + + def fix(dem, coastline, **kwargs): # --------------------------------------------------------------------- logger.info("adjust dem\n") # --------------------------------------------------------------------- ifunction = kwargs.get("resample_function", "nearest") + reset_flag = kwargs.get("reset_flag", False) # define coastline try: @@ -37,7 +111,10 @@ def fix(dem, coastline, **kwargs): except: shp = gp.GeoDataFrame(coastline) - shp = simplify(shp) + sc = kwargs.get("simplify_coastlines", False) + + if sc: + shp = simplify(shp) if "ival" in dem.data_vars: xp = dem.ilons.values @@ -130,7 +207,7 @@ def fix(dem, coastline, **kwargs): else: dem = dem.assign(adjusted=dem.elevation) - return dem, True + return dem, True, flag if "ival" in dem.data_vars: df = pd.DataFrame( @@ -154,7 +231,7 @@ def fix(dem, coastline, **kwargs): # Add land boundaries to a shapely object try: lbs = [] - for l in range(len(land.boundary.geoms)): + for l in tqdm(range(len(land.boundary.geoms))): z = shapely.linearrings(land.boundary.geoms[l].coords[:]) lbs.append(z) except: @@ -172,7 +249,7 @@ def fix(dem, coastline, **kwargs): try: wl = [] - for l in range(len(land.boundary.geoms)): + for l in tqdm(range(len(land.boundary.geoms))): wl.append(tree.query(bp[l], predicate="contains").tolist()) ns = [j for i in wl for j in i] except: @@ -199,7 +276,7 @@ def fix(dem, coastline, **kwargs): xw = pw.longitude.values yw = pw.latitude.values - bw = resample(dem, xw, yw, var="elevation", wet=True, flag=flag, function=ifunction) + bw = resample(dem, xw, yw, var="elevation", wet=True, flag=flag, reset_flag=reset_flag, function=ifunction) df.loc[pw.index, "elevation"] = bw # replace in original dataset @@ -218,7 +295,7 @@ def fix(dem, coastline, **kwargs): xl = pl.longitude.values yl = pl.latitude.values - bd = resample(dem, xl, yl, var="elevation", wet=False, flag=flag, function=ifunction) + bd = resample(dem, xl, yl, var="elevation", wet=False, flag=flag, reset_flag=reset_flag, function=ifunction) df.loc[pl.index, "elevation"] = bd # replace in original dataset @@ -285,7 +362,7 @@ def fix(dem, coastline, **kwargs): bmask[i, j] = True cdem.adjusted.values[bmask] = 0.0 # set value - logger.info("setting land points with nan values to zero") + logger.info(f"setting {bmask.size} land points with nan values to zero") cdem["adjusted"] = cdem.adjusted.fillna(0.0) # for land points if any (lakes, etc.) else: @@ -423,10 +500,15 @@ def check2(dataset, coastline): return bps -def resample(dem, xw, yw, var=None, wet=True, flag=None, function="nearest"): +def resample(dem, xw, yw, var=None, wet=True, flag=None, reset_flag=False, function="nearest"): # Define points with positive bathymetry x, y = np.meshgrid(dem.longitude, dem.latitude) + print(f"reset_flag={reset_flag}") + + if reset_flag: + flag = 0 + if flag == 1: gx = xw - 180.0 xx = x - 180.0 @@ -457,6 +539,8 @@ def resample(dem, xw, yw, var=None, wet=True, flag=None, function="nearest"): orig = pyresample.geometry.SwathDefinition(lons=mx, lats=my) # original bathymetry points targ = pyresample.geometry.SwathDefinition(lons=gx, lats=yw) # wet points + mdem = mdem.astype(float) + if function == "nearest": bw = pyresample.kd_tree.resample_nearest(orig, mdem, targ, radius_of_influence=100000, fill_value=np.nan) @@ -485,11 +569,11 @@ def dem_range(data, lon_min, lon_max, lat_min, lat_max): lon1 = lon_max if (lon_min < data.longitude.min()) or (lon_max > data.longitude.max()): - print("Lon must be within {} and {}".format(data.longitude.min().values, data.longitude.max().values)) - print("compensating if global dataset available") + logger.info("Lon must be within {} and {}".format(data.longitude.min().values, data.longitude.max().values)) + logger.info("compensating if global dataset available") if (lat_min < data.latitude.min()) or (lat_max > data.latitude.max()): - print("Lat is within {} and {}".format(data.latitude.min().values, data.latitude.max().values)) + logger.info("Lat is within {} and {}".format(data.latitude.min().values, data.latitude.max().values)) # get idx if lon_max - lon_min == dlon1 - dlon0: @@ -516,16 +600,16 @@ def dem_range(data, lon_min, lon_max, lat_min, lat_max): lat_1 = min(data.latitude.size, j1 + 3) if i0 > i1: - p1 = data.elevation.isel(longitude=slice(lon_0, data.longitude.size), latitude=slice(lat_0, lat_1)) + p1 = data.isel(longitude=slice(lon_0, data.longitude.size), latitude=slice(lat_0, lat_1)) p1 = p1.assign_coords({"longitude": p1.longitude.values - 360.0}) - p2 = data.elevation.isel(longitude=slice(0, lon_1), latitude=slice(lat_0, lat_1)) + p2 = data.isel(longitude=slice(0, lon_1), latitude=slice(lat_0, lat_1)) dem = xr.concat([p1, p2], dim="longitude") else: - dem = data.elevation.isel(longitude=slice(lon_0, lon_1), latitude=slice(lat_0, lat_1)) + dem = data.isel(longitude=slice(lon_0, lon_1), latitude=slice(lat_0, lat_1)) if np.abs(np.mean(dem.longitude) - np.mean([lon_min, lon_max])) > 170.0: c = np.sign(np.mean([lon_min, lon_max])) diff --git a/pyposeidon/utils/global_bgmesh.py b/pyposeidon/utils/global_bgmesh.py index 155081bb..f5467df5 100644 --- a/pyposeidon/utils/global_bgmesh.py +++ b/pyposeidon/utils/global_bgmesh.py @@ -3,6 +3,7 @@ import pyresample import xarray as xr import os +from tqdm.auto import tqdm import pyposeidon.boundary as pb from pyposeidon.utils.stereo import to_3d, to_lat_lon, stereo_to_3d @@ -17,6 +18,7 @@ ) import pyposeidon.dem as pdem import pyposeidon.mesh as pmesh +from pyposeidon.utils.fix import dem_range, resample import logging logger = logging.getLogger(__name__) @@ -93,26 +95,37 @@ def make_bgmesh_global(dfb, fpos, dem, **kwargs): y0 = mesh.Dataset.SCHISM_hgrid_node_y.values trii0 = mesh.Dataset.SCHISM_hgrid_face_nodes.values[:, :3] + m = mesh.Dataset + m = m.assign({"x": m["SCHISM_hgrid_node_x"], "y": m["SCHISM_hgrid_node_y"]}) + # Stereo -> lat/lon + clon, clat = to_lat_lon(x0, y0) + m["x"].data = clon + m["y"].data = clat + # Select DEM - try: - dm = dem.adjusted.to_dataframe() - except: - dm = dem.elevation.to_dataframe() + # try: + # dm = dem.adjusted.to_dataframe() + # except: + # dm = dem.elevation.to_dataframe() - lon = dem.longitude.values - lat = dem.latitude.values + # lon = dem.longitude.values + # lat = dem.latitude.values - X, Y = np.meshgrid(lon, lat) + # X, Y = np.meshgrid(lon, lat) # Stereo -> lat/lon - clon, clat = to_lat_lon(x0, y0) + # clon, clat = to_lat_lon(x0, y0) # resample bathymetry - gdem = dm.values.flatten() + # gdem = dm.values.flatten() - orig = pyresample.geometry.SwathDefinition(lons=X.flatten(), lats=Y.flatten()) # original bathymetry points - targ = pyresample.geometry.SwathDefinition(lons=clon, lats=clat) # wet points + # orig = pyresample.geometry.SwathDefinition(lons=X.flatten(), lats=Y.flatten()) # original bathymetry points + # targ = pyresample.geometry.SwathDefinition(lons=clon, lats=clat) # wet points - bw = pyresample.kd_tree.resample_nearest(orig, gdem, targ, radius_of_influence=50000, fill_value=0) + # bw = pyresample.kd_tree.resample_nearest(orig, gdem, targ, radius_of_influence=50000, fill_value=0) + + dem_on_mesh(m, dem) + + bw = m.depth.data bz = pd.DataFrame({"z": bw.flatten()}) @@ -130,3 +143,58 @@ def make_bgmesh_global(dfb, fpos, dem, **kwargs): dfb = bk return nodes, elems + + +def fillv(dem, perms, m, buffer=0.0): + + for (i1, i2), (j1, j2) in tqdm(perms, total=len(perms)): + + lon1 = dem.longitude.data[i1:i2][0] + lon2 = dem.longitude.data[i1:i2][-1] + lat1 = dem.latitude.data[j1:j2][0] + lat2 = dem.latitude.data[j1:j2][-1] + + # buffer lat/lon + blon1 = lon1 - buffer + blon2 = lon2 + buffer + blat1 = lat1 - buffer + blat2 = lat2 + buffer + + # de = dem.sel(lon=slice(blon1,blon2)).sel(lat=slice(blat1,blat2)) + de = dem_range(dem, blon1, blon2, blat1, blat2) + + # subset mesh + indices_of_nodes_in_bbox = np.where( + (m.y >= lat1 - buffer / 2) + & (m.y <= lat2 + buffer / 2) + & (m.x >= lon1 - buffer / 2) + & (m.x <= lon2 + buffer / 2) + )[0] + + bm = m.isel(nSCHISM_hgrid_node=indices_of_nodes_in_bbox) + ids = np.argwhere(np.isnan(bm.depth.values)).flatten() + + grid_x, grid_y = bm.x.data, bm.y.data + + bd = resample(de, grid_x, grid_y, var="adjusted", wet=True, flag=0, function="gauss") + + m["depth"].loc[dict(nSCHISM_hgrid_node=indices_of_nodes_in_bbox)] = -bd + + +def dem_on_mesh(mesh, dem): + + ilats = dem.elevation.chunk("auto").chunks[0] + ilons = dem.elevation.chunk("auto").chunks[1] + + if len(ilons) == 1: + ilons = (int(ilons[0] / 2), int(ilons[0] / 2)) + + idx = [sum(ilons[:i]) for i in range(len(ilons) + 1)] + jdx = [sum(ilats[:i]) for i in range(len(ilats) + 1)] + + blon = list(zip(idx[:-1], idx[1:])) + blat = list(zip(jdx[:-1], jdx[1:])) + + perms = [(x, y) for x in blon for y in blat] + + fillv(dem, perms, mesh, buffer=5) From 4378335f3b549804850756f49b0aef0ff325f236 Mon Sep 17 00:00:00 2001 From: George Breyiannis Date: Sat, 6 Apr 2024 17:00:56 +0200 Subject: [PATCH 09/13] black update --- pyposeidon/bnd.py | 1 + pyposeidon/boundary.py | 1 + pyposeidon/d3d.py | 1 + pyposeidon/mgmsh.py | 1 + pyposeidon/mjigsaw.py | 1 + pyposeidon/model.py | 1 + pyposeidon/schism.py | 1 + pyposeidon/tide/tide.py | 1 + pyposeidon/utils/bfs.py | 1 + pyposeidon/utils/cast.py | 1 + pyposeidon/utils/data.py | 1 + pyposeidon/utils/get_ts.py | 1 + pyposeidon/utils/get_value.py | 1 + pyposeidon/utils/hplot.py | 1 + pyposeidon/utils/mplot.py | 1 + pyposeidon/utils/obs.py | 1 + pyposeidon/utils/pplot.py | 1 + pyposeidon/utils/vals.py | 1 + 18 files changed, 18 insertions(+) diff --git a/pyposeidon/bnd.py b/pyposeidon/bnd.py index e78a918d..8dcc9351 100644 --- a/pyposeidon/bnd.py +++ b/pyposeidon/bnd.py @@ -1,4 +1,5 @@ """Get boundaries""" + import numpy as np diff --git a/pyposeidon/boundary.py b/pyposeidon/boundary.py index 2b337568..f11f7e0e 100644 --- a/pyposeidon/boundary.py +++ b/pyposeidon/boundary.py @@ -1,6 +1,7 @@ """ Geometry module of pyposeidon. It manages model boundaries. """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/d3d.py b/pyposeidon/d3d.py index d2f0f576..b3d1984d 100644 --- a/pyposeidon/d3d.py +++ b/pyposeidon/d3d.py @@ -2,6 +2,7 @@ Main d3d module of pyposeidon. It controls the creation, output & execution of a complete simulation based on DELFT3D. """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/mgmsh.py b/pyposeidon/mgmsh.py index 33f9fad1..f44abeab 100644 --- a/pyposeidon/mgmsh.py +++ b/pyposeidon/mgmsh.py @@ -2,6 +2,7 @@ gmsh module """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/mjigsaw.py b/pyposeidon/mjigsaw.py index 33f6fa86..b86573d1 100644 --- a/pyposeidon/mjigsaw.py +++ b/pyposeidon/mjigsaw.py @@ -2,6 +2,7 @@ jigsaw module """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/model.py b/pyposeidon/model.py index 26d88762..c43f985f 100644 --- a/pyposeidon/model.py +++ b/pyposeidon/model.py @@ -4,6 +4,7 @@ Currently supported : DELFT3D , SCHISM """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/schism.py b/pyposeidon/schism.py index 6640549f..5fa8a8e7 100644 --- a/pyposeidon/schism.py +++ b/pyposeidon/schism.py @@ -2,6 +2,7 @@ Schism model of pyposeidon. It controls the creation, execution & output of a complete simulation based on SCHISM. """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/tide/tide.py b/pyposeidon/tide/tide.py index 6cbf4e66..70b19ee4 100644 --- a/pyposeidon/tide/tide.py +++ b/pyposeidon/tide/tide.py @@ -1,4 +1,5 @@ """Setting the tidal boundary conditions""" + import numpy as np import xarray as xr from scipy import interpolate diff --git a/pyposeidon/utils/bfs.py b/pyposeidon/utils/bfs.py index eea4bdfa..5f60412a 100644 --- a/pyposeidon/utils/bfs.py +++ b/pyposeidon/utils/bfs.py @@ -2,6 +2,7 @@ Utility functions """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/utils/cast.py b/pyposeidon/utils/cast.py index 8a4b66b3..aedb3855 100644 --- a/pyposeidon/utils/cast.py +++ b/pyposeidon/utils/cast.py @@ -2,6 +2,7 @@ Simulation management module """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/utils/data.py b/pyposeidon/utils/data.py index ddde2eca..810f262d 100644 --- a/pyposeidon/utils/data.py +++ b/pyposeidon/utils/data.py @@ -2,6 +2,7 @@ Data analysis module """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/utils/get_ts.py b/pyposeidon/utils/get_ts.py index 9c712592..54acd614 100644 --- a/pyposeidon/utils/get_ts.py +++ b/pyposeidon/utils/get_ts.py @@ -2,6 +2,7 @@ Point analysis module """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/utils/get_value.py b/pyposeidon/utils/get_value.py index 4f8e396f..baefe352 100644 --- a/pyposeidon/utils/get_value.py +++ b/pyposeidon/utils/get_value.py @@ -2,6 +2,7 @@ Utility function """ + # Copyright 2018 European Union # This file is part of pyposeidon, a software written by George Breyiannis (JRC E.1) # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/utils/hplot.py b/pyposeidon/utils/hplot.py index 21d796b0..44b35c4d 100644 --- a/pyposeidon/utils/hplot.py +++ b/pyposeidon/utils/hplot.py @@ -2,6 +2,7 @@ Visualization module based on holoviews """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/utils/mplot.py b/pyposeidon/utils/mplot.py index a1c04537..f2323ae8 100644 --- a/pyposeidon/utils/mplot.py +++ b/pyposeidon/utils/mplot.py @@ -2,6 +2,7 @@ Visualization module in 3D """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/utils/obs.py b/pyposeidon/utils/obs.py index 2f9e27f9..69131d31 100644 --- a/pyposeidon/utils/obs.py +++ b/pyposeidon/utils/obs.py @@ -2,6 +2,7 @@ Observational Data retrieval """ + from __future__ import annotations from searvey import ioc import pandas as pd diff --git a/pyposeidon/utils/pplot.py b/pyposeidon/utils/pplot.py index 7b7a8ad8..560b442b 100644 --- a/pyposeidon/utils/pplot.py +++ b/pyposeidon/utils/pplot.py @@ -2,6 +2,7 @@ Visualization module based on matplotlib """ + # Copyright 2018 European Union # This file is part of pyposeidon. # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). diff --git a/pyposeidon/utils/vals.py b/pyposeidon/utils/vals.py index f14cc722..2bc300b6 100644 --- a/pyposeidon/utils/vals.py +++ b/pyposeidon/utils/vals.py @@ -2,6 +2,7 @@ Observations management module """ + # Copyright 2018 European Union # This file is part of pyposeidon, a software written by George Breyiannis (JRC E.1) # Licensed under the EUPL, Version 1.2 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "Licence"). From f07267ef35fa607f67ebc5da63f6def4cd5d021d Mon Sep 17 00:00:00 2001 From: Panos Mavrogiorgos Date: Mon, 8 Apr 2024 15:47:00 +0300 Subject: [PATCH 10/13] ci: Relax black constraint --- .github/workflows/conda_pip.yml | 2 +- locks/requirements-ci.txt | 173 +- locks/requirements-full.txt | 319 +- locks/requirements-viz.txt | 280 +- locks/requirements.txt | 152 +- poetry.lock | 4941 +++++++++++++++++-------------- pyproject.toml | 2 +- 7 files changed, 3100 insertions(+), 2769 deletions(-) diff --git a/.github/workflows/conda_pip.yml b/.github/workflows/conda_pip.yml index 4c1ff2b2..a688204f 100644 --- a/.github/workflows/conda_pip.yml +++ b/.github/workflows/conda_pip.yml @@ -41,7 +41,7 @@ jobs: python-version: "3.10" - name: "Install Python dependencies" - run: "pip install 'black<24'" + run: "pip install 'black'" - name: "Run linters" run: "black --check ./" diff --git a/locks/requirements-ci.txt b/locks/requirements-ci.txt index 656fdef2..30b56225 100644 --- a/locks/requirements-ci.txt +++ b/locks/requirements-ci.txt @@ -1,109 +1,110 @@ affine==2.4.0 ; python_version >= "3.9" and python_version < "4" -annotated-types==0.5.0 ; python_version >= "3.9" and python_version < "4.0" -anyio==3.7.1 ; python_version >= "3.9" and python_version < "4.0" +annotated-types==0.6.0 ; python_version >= "3.9" and python_version < "4.0" +anyio==4.3.0 ; python_version >= "3.9" and python_version < "4.0" asciitree==0.3.3 ; python_version >= "3.9" and python_version < "4" -attrs==23.1.0 ; python_version >= "3.9" and python_version < "4" -beautifulsoup4==4.12.2 ; python_version >= "3.9" and python_version < "4" -black==23.3.0 ; python_version >= "3.9" and python_version < "4" +attrs==23.2.0 ; python_version >= "3.9" and python_version < "4" +beautifulsoup4==4.12.3 ; python_version >= "3.9" and python_version < "4" +black==24.3.0 ; python_version >= "3.9" and python_version < "4" bump2version==1.0.1 ; python_version >= "3.9" and python_version < "4" -cartopy==0.21.1 ; python_version >= "3.9" and python_version < "4" -certifi==2023.5.7 ; python_version >= "3.9" and python_version < "4" -cffi==1.15.1 ; python_version >= "3.9" and python_version < "4" -cfgrib==0.9.10.4 ; python_version >= "3.9" and python_version < "4" -cftime==1.6.2 ; python_version >= "3.9" and python_version < "4" -charset-normalizer==3.1.0 ; python_version >= "3.9" and python_version < "4" +cartopy==0.22.0 ; python_version >= "3.9" and python_version < "4" +certifi==2024.2.2 ; python_version >= "3.9" and python_version < "4" +cffi==1.16.0 ; python_version >= "3.9" and python_version < "4" +cfgrib==0.9.11.0 ; python_version >= "3.9" and python_version < "4" +cftime==1.6.3 ; python_version >= "3.9" and python_version < "4" +charset-normalizer==3.3.2 ; python_version >= "3.9" and python_version < "4" click-plugins==1.1.1 ; python_version >= "3.9" and python_version < "4" -click==8.1.4 ; python_version >= "3.9" and python_version < "4" +click==8.1.7 ; python_version >= "3.9" and python_version < "4" cligj==0.7.2 ; python_version >= "3.9" and python_version < "4" -cloudpickle==2.2.1 ; python_version >= "3.9" and python_version < "4" +cloudpickle==3.0.0 ; python_version >= "3.9" and python_version < "4" colorama==0.4.6 ; python_version >= "3.9" and python_version < "4" and (sys_platform == "win32" or platform_system == "Windows") -colorlog==6.7.0 ; python_version >= "3.9" and python_version < "4" +colorlog==6.8.2 ; python_version >= "3.9" and python_version < "4" configobj==5.0.8 ; python_version >= "3.9" and python_version < "4" -contourpy==1.1.0 ; python_version >= "3.9" and python_version < "4" -coverage[toml]==7.2.7 ; python_version >= "3.9" and python_version < "4" -cycler==0.11.0 ; python_version >= "3.9" and python_version < "4" -dask==2023.6.1 ; python_version >= "3.9" and python_version < "4" -dataretrieval==1.0.4 ; python_version >= "3.9" and python_version < "4.0" +contourpy==1.2.1 ; python_version >= "3.9" and python_version < "4" +coverage[toml]==7.4.4 ; python_version >= "3.9" and python_version < "4" +cycler==0.12.1 ; python_version >= "3.9" and python_version < "4" +dask==2024.4.1 ; python_version >= "3.9" and python_version < "4" +dataretrieval==1.0.6 ; python_version >= "3.9" and python_version < "4.0" deprecated==1.2.14 ; python_version >= "3.9" and python_version < "4.0" docopt==0.6.2 ; python_version >= "3.9" and python_version < "4" -eccodes==1.5.2 ; python_version >= "3.9" and python_version < "4" -entrypoints==0.4 ; python_version >= "3.9" and python_version < "4" -erddapy==2.0.2 ; python_version >= "3.9" and python_version < "4.0" -exceptiongroup==1.1.2 ; python_version >= "3.9" and python_version < "3.11" -execnet==1.9.0 ; python_version >= "3.9" and python_version < "4" -f90nml==1.4.3 ; python_version >= "3.9" and python_version < "4" -fasteners==0.18 ; python_version >= "3.9" and python_version < "4" +donfig==0.8.1.post0 ; python_version >= "3.9" and python_version < "4" +eccodes==1.7.0 ; python_version >= "3.9" and python_version < "4" +erddapy==2.2.0 ; python_version >= "3.9" and python_version < "4.0" +exceptiongroup==1.2.0 ; python_version >= "3.9" and python_version < "3.11" +execnet==2.1.1 ; python_version >= "3.9" and python_version < "4" +f90nml==1.4.4 ; python_version >= "3.9" and python_version < "4" +fasteners==0.19 ; python_version >= "3.9" and python_version < "4" and sys_platform != "emscripten" findlibs==0.0.5 ; python_version >= "3.9" and python_version < "4" -fiona==1.9.4.post1 ; python_version >= "3.9" and python_version < "4" -fonttools==4.40.0 ; python_version >= "3.9" and python_version < "4" -fsspec==2023.6.0 ; python_version >= "3.9" and python_version < "4" -geopandas==0.13.2 ; python_version >= "3.9" and python_version < "4" -gmsh==4.11.1 ; python_version >= "3.9" and python_version < "4" +fiona==1.9.6 ; python_version >= "3.9" and python_version < "4" +fonttools==4.51.0 ; python_version >= "3.9" and python_version < "4" +fsspec==2024.3.1 ; python_version >= "3.9" and python_version < "4" +geopandas==0.14.3 ; python_version >= "3.9" and python_version < "4" +gmsh==4.12.2 ; python_version >= "3.9" and python_version < "4" h11==0.14.0 ; python_version >= "3.9" and python_version < "4.0" html5lib==1.1 ; python_version >= "3.9" and python_version < "4.0" -httpcore==0.17.3 ; python_version >= "3.9" and python_version < "4.0" -httpx==0.24.1 ; python_version >= "3.9" and python_version < "4.0" -idna==3.4 ; python_version >= "3.9" and python_version < "4" -importlib-metadata==6.7.0 ; python_version >= "3.9" and python_version < "4" -importlib-resources==5.12.0 ; python_version >= "3.9" and python_version < "4.0" +httpcore==1.0.5 ; python_version >= "3.9" and python_version < "4.0" +httpx==0.27.0 ; python_version >= "3.9" and python_version < "4.0" +idna==3.6 ; python_version >= "3.9" and python_version < "4" +importlib-metadata==7.1.0 ; python_version >= "3.9" and python_version < "3.12" +importlib-resources==6.4.0 ; python_version >= "3.9" and python_version < "4.0" iniconfig==2.0.0 ; python_version >= "3.9" and python_version < "4" -jinja2==3.1.2 ; python_version >= "3.9" and python_version < "4" -joblib==1.3.1 ; python_version >= "3.9" and python_version < "4" -kiwisolver==1.4.4 ; python_version >= "3.9" and python_version < "4" -limits==3.5.0 ; python_version >= "3.9" and python_version < "4.0" -llvmlite==0.40.1 ; python_version >= "3.9" and python_version < "4" +jinja2==3.1.3 ; python_version >= "3.9" and python_version < "4" +joblib==1.3.2 ; python_version >= "3.9" and python_version < "4" +kiwisolver==1.4.5 ; python_version >= "3.9" and python_version < "4" +limits==3.10.1 ; python_version >= "3.9" and python_version < "4.0" +llvmlite==0.42.0 ; python_version >= "3.9" and python_version < "4" locket==1.0.0 ; python_version >= "3.9" and python_version < "4" -lxml==4.9.3 ; python_version >= "3.9" and python_version < "4.0" -markupsafe==2.1.3 ; python_version >= "3.9" and python_version < "4" -matplotlib==3.7.2 ; python_version >= "3.9" and python_version < "4" +lxml==5.2.1 ; python_version >= "3.9" and python_version < "4.0" +markupsafe==2.1.5 ; python_version >= "3.9" and python_version < "4" +matplotlib==3.8.4 ; python_version >= "3.9" and python_version < "4" mypy-extensions==1.0.0 ; python_version >= "3.9" and python_version < "4" -netcdf4==1.6.4 ; python_version >= "3.9" and python_version < "4" -numcodecs==0.11.0 ; python_version >= "3.9" and python_version < "4" -numpy==1.24.4 ; python_version >= "3.9" and python_version < "4" -packaging==23.1 ; python_version >= "3.9" and python_version < "4" -pandas==1.5.3 ; python_version >= "3.9" and python_version < "4" -partd==1.4.0 ; python_version >= "3.9" and python_version < "4" -pathspec==0.11.1 ; python_version >= "3.9" and python_version < "4" -pillow==10.0.0 ; python_version >= "3.9" and python_version < "4" -platformdirs==3.8.0 ; python_version >= "3.9" and python_version < "4" -pluggy==1.2.0 ; python_version >= "3.9" and python_version < "4" -psutil==5.9.5 ; python_version >= "3.9" and python_version < "4" -pycparser==2.21 ; python_version >= "3.9" and python_version < "4" -pydantic-core==2.1.2 ; python_version >= "3.9" and python_version < "4.0" -pydantic==2.0.2 ; python_version >= "3.9" and python_version < "4.0" +netcdf4==1.6.5 ; python_version >= "3.9" and python_version < "4" +numcodecs==0.12.1 ; python_version >= "3.9" and python_version < "4" +numpy==1.26.4 ; python_version >= "3.9" and python_version < "4" +packaging==24.0 ; python_version >= "3.9" and python_version < "4" +pandas==2.2.1 ; python_version >= "3.9" and python_version < "4" +partd==1.4.1 ; python_version >= "3.9" and python_version < "4" +pathspec==0.12.1 ; python_version >= "3.9" and python_version < "4" +pillow==10.3.0 ; python_version >= "3.9" and python_version < "4" +platformdirs==4.2.0 ; python_version >= "3.9" and python_version < "4" +pluggy==1.4.0 ; python_version >= "3.9" and python_version < "4" +psutil==5.9.8 ; python_version >= "3.9" and python_version < "4" +pycparser==2.22 ; python_version >= "3.9" and python_version < "4" +pydantic-core==2.16.3 ; python_version >= "3.9" and python_version < "4.0" +pydantic==2.6.4 ; python_version >= "3.9" and python_version < "4.0" pydap==3.4.1 ; python_version >= "3.9" and python_version < "4" -pykdtree==1.3.7.post0 ; python_version >= "3.9" and python_version < "4" -pyparsing==3.0.9 ; python_version >= "3.9" and python_version < "4" -pyproj==3.6.0 ; python_version >= "3.9" and python_version < "4" -pyresample==1.27.1 ; python_version >= "3.9" and python_version < "4" +pykdtree==1.3.11 ; python_version >= "3.9" and python_version < "4" +pyparsing==3.1.2 ; python_version >= "3.9" and python_version < "4" +pyproj==3.6.1 ; python_version >= "3.9" and python_version < "4" +pyresample==1.28.2 ; python_version >= "3.9" and python_version < "4" pyshp==2.3.1 ; python_version >= "3.9" and python_version < "4" -pytest-cov==4.1.0 ; python_version >= "3.9" and python_version < "4" -pytest-xdist==3.3.1 ; python_version >= "3.9" and python_version < "4" -pytest==7.4.0 ; python_version >= "3.9" and python_version < "4" -python-dateutil==2.8.2 ; python_version >= "3.9" and python_version < "4" -pytz==2023.3 ; python_version >= "3.9" and python_version < "4" -pyyaml==6.0 ; python_version >= "3.9" and python_version < "4" -rasterio==1.3.8 ; python_version >= "3.9" and python_version < "4" +pytest-cov==5.0.0 ; python_version >= "3.9" and python_version < "4" +pytest-xdist==3.5.0 ; python_version >= "3.9" and python_version < "4" +pytest==8.1.1 ; python_version >= "3.9" and python_version < "4" +python-dateutil==2.9.0.post0 ; python_version >= "3.9" and python_version < "4" +pytz==2024.1 ; python_version >= "3.9" and python_version < "4" +pyyaml==6.0.1 ; python_version >= "3.9" and python_version < "4" +rasterio==1.3.9 ; python_version >= "3.9" and python_version < "4" requests==2.31.0 ; python_version >= "3.9" and python_version < "4" -rioxarray==0.14.1 ; python_version >= "3.9" and python_version < "4" +rioxarray==0.15.0 ; python_version >= "3.9" and python_version < "4" ruamel-yaml-clib==0.2.7 ; python_version >= "3.9" and python_version < "4" -ruamel-yaml==0.17.32 ; python_version >= "3.9" and python_version < "4" -scipy==1.9.3 ; python_version >= "3.9" and python_version < "4" -searvey==0.3.1 ; python_version >= "3.9" and python_version < "4.0" -setuptools==68.0.0 ; python_version >= "3.9" and python_version < "4" -shapely==2.0.1 ; python_version >= "3.9" and python_version < "4" +ruamel-yaml==0.18.6 ; python_version >= "3.9" and python_version < "4" +scipy==1.13.0 ; python_version >= "3.9" and python_version < "4" +searvey==0.3.11 ; python_version >= "3.9" and python_version < "4.0" +setuptools==69.2.0 ; python_version >= "3.9" and python_version < "4" +shapely==2.0.3 ; python_version >= "3.9" and python_version < "4" six==1.16.0 ; python_version >= "3.9" and python_version < "4" -sniffio==1.3.0 ; python_version >= "3.9" and python_version < "4.0" +sniffio==1.3.1 ; python_version >= "3.9" and python_version < "4.0" snuggs==1.4.7 ; python_version >= "3.9" and python_version < "4" -soupsieve==2.4.1 ; python_version >= "3.9" and python_version < "4" -tomli==2.0.1 ; python_version >= "3.9" and python_version < "3.11" -toolz==0.12.0 ; python_version >= "3.9" and python_version < "4" -tqdm==4.65.0 ; python_version >= "3.9" and python_version < "4" -typing-extensions==4.7.1 ; python_version >= "3.9" and python_version < "4.0" -urllib3==2.0.3 ; python_version >= "3.9" and python_version < "4" +soupsieve==2.5 ; python_version >= "3.9" and python_version < "4" +tomli==2.0.1 ; python_version >= "3.9" and python_full_version <= "3.11.0a6" +toolz==0.12.1 ; python_version >= "3.9" and python_version < "4" +tqdm==4.66.2 ; python_version >= "3.9" and python_version < "4" +typing-extensions==4.11.0 ; python_version >= "3.9" and python_version < "4.0" +tzdata==2024.1 ; python_version >= "3.9" and python_version < "4" +urllib3==2.2.1 ; python_version >= "3.9" and python_version < "4" webencodings==0.5.1 ; python_version >= "3.9" and python_version < "4.0" webob==1.8.7 ; python_version >= "3.9" and python_version < "4" -wrapt==1.15.0 ; python_version >= "3.9" and python_version < "4.0" -xarray==2023.6.0 ; python_version >= "3.9" and python_version < "4" -zarr==2.15.0 ; python_version >= "3.9" and python_version < "4" -zipp==3.15.0 ; python_version >= "3.9" and python_version < "4" +wrapt==1.16.0 ; python_version >= "3.9" and python_version < "4.0" +xarray==2024.3.0 ; python_version >= "3.9" and python_version < "4" +zarr==2.17.2 ; python_version >= "3.9" and python_version < "4" +zipp==3.18.1 ; python_version >= "3.9" and python_version < "3.12" diff --git a/locks/requirements-full.txt b/locks/requirements-full.txt index 77bb44f1..a457500e 100644 --- a/locks/requirements-full.txt +++ b/locks/requirements-full.txt @@ -1,215 +1,212 @@ affine==2.4.0 ; python_version >= "3.9" and python_version < "4" -annotated-types==0.5.0 ; python_version >= "3.9" and python_version < "4.0" -anyio==3.7.1 ; python_version >= "3.9" and python_version < "4.0" -appnope==0.1.3 ; python_version >= "3.9" and python_version < "4" and (platform_system == "Darwin" or sys_platform == "darwin") +annotated-types==0.6.0 ; python_version >= "3.9" and python_version < "4.0" +anyio==4.3.0 ; python_version >= "3.9" and python_version < "4.0" +appnope==0.1.4 ; python_version >= "3.9" and python_version < "4" and platform_system == "Darwin" apptools==5.2.1 ; python_version >= "3.9" and python_version < "4" argon2-cffi-bindings==21.2.0 ; python_version >= "3.9" and python_version < "4" -argon2-cffi==21.3.0 ; python_version >= "3.9" and python_version < "4" +argon2-cffi==23.1.0 ; python_version >= "3.9" and python_version < "4" asciitree==0.3.3 ; python_version >= "3.9" and python_version < "4" -asttokens==2.2.1 ; python_version >= "3.9" and python_version < "4" -attrs==23.1.0 ; python_version >= "3.9" and python_version < "4" -backcall==0.2.0 ; python_version >= "3.9" and python_version < "4" -beautifulsoup4==4.12.2 ; python_version >= "3.9" and python_version < "4" -black==23.3.0 ; python_version >= "3.9" and python_version < "4" -bleach==6.0.0 ; python_version >= "3.9" and python_version < "4" -bokeh==3.1.1 ; python_version >= "3.9" and python_version < "4" +asttokens==2.4.1 ; python_version >= "3.9" and python_version < "4" +attrs==23.2.0 ; python_version >= "3.9" and python_version < "4" +babel==2.14.0 ; python_version >= "3.9" and python_version < "4" +beautifulsoup4==4.12.3 ; python_version >= "3.9" and python_version < "4" +black==24.3.0 ; python_version >= "3.9" and python_version < "4" +bleach==6.1.0 ; python_version >= "3.9" and python_version < "4" +bokeh==3.4.0 ; python_version >= "3.9" and python_version < "4" bump2version==1.0.1 ; python_version >= "3.9" and python_version < "4" -cartopy==0.21.1 ; python_version >= "3.9" and python_version < "4" -certifi==2023.5.7 ; python_version >= "3.9" and python_version < "4" -cffi==1.15.1 ; python_version >= "3.9" and python_version < "4" -cfgrib==0.9.10.4 ; python_version >= "3.9" and python_version < "4" -cftime==1.6.2 ; python_version >= "3.9" and python_version < "4" -charset-normalizer==3.1.0 ; python_version >= "3.9" and python_version < "4" +cartopy==0.22.0 ; python_version >= "3.9" and python_version < "4" +certifi==2024.2.2 ; python_version >= "3.9" and python_version < "4" +cffi==1.16.0 ; python_version >= "3.9" and python_version < "4" +cfgrib==0.9.11.0 ; python_version >= "3.9" and python_version < "4" +cftime==1.6.3 ; python_version >= "3.9" and python_version < "4" +charset-normalizer==3.3.2 ; python_version >= "3.9" and python_version < "4" click-plugins==1.1.1 ; python_version >= "3.9" and python_version < "4" -click==8.1.4 ; python_version >= "3.9" and python_version < "4" +click==8.1.7 ; python_version >= "3.9" and python_version < "4" cligj==0.7.2 ; python_version >= "3.9" and python_version < "4" -cloudpickle==2.2.1 ; python_version >= "3.9" and python_version < "4" -colorama==0.4.6 ; python_version >= "3.9" and python_version < "4" and (sys_platform == "win32" or platform_system == "Windows") -colorcet==3.0.1 ; python_version >= "3.9" and python_version < "4" -colorlog==6.7.0 ; python_version >= "3.9" and python_version < "4" -comm==0.1.3 ; python_version >= "3.9" and python_version < "4" +cloudpickle==3.0.0 ; python_version >= "3.9" and python_version < "4" +colorama==0.4.6 ; python_version >= "3.9" and python_version < "4" +colorcet==3.1.0 ; python_version >= "3.9" and python_version < "4" +colorlog==6.8.2 ; python_version >= "3.9" and python_version < "4" +comm==0.2.2 ; python_version >= "3.9" and python_version < "4" configobj==5.0.8 ; python_version >= "3.9" and python_version < "4" -contourpy==1.1.0 ; python_version >= "3.9" and python_version < "4" -coverage[toml]==7.2.7 ; python_version >= "3.9" and python_version < "4" -cycler==0.11.0 ; python_version >= "3.9" and python_version < "4" -dask==2023.6.1 ; python_version >= "3.9" and python_version < "4" -dataretrieval==1.0.4 ; python_version >= "3.9" and python_version < "4.0" -datashader==0.15.1 ; python_version >= "3.9" and python_version < "4" -datashape==0.5.2 ; python_version >= "3.9" and python_version < "4" -debugpy==1.6.7 ; python_version >= "3.9" and python_version < "4" +contourpy==1.2.1 ; python_version >= "3.9" and python_version < "4" +coverage[toml]==7.4.4 ; python_version >= "3.9" and python_version < "4" +cycler==0.12.1 ; python_version >= "3.9" and python_version < "4" +dask==2024.4.1 ; python_version >= "3.9" and python_version < "4" +dataretrieval==1.0.6 ; python_version >= "3.9" and python_version < "4.0" +datashader==0.16.0 ; python_version >= "3.9" and python_version < "4" +debugpy==1.8.1 ; python_version >= "3.9" and python_version < "4" decorator==5.1.1 ; python_version >= "3.9" and python_version < "4" defusedxml==0.7.1 ; python_version >= "3.9" and python_version < "4" deprecated==1.2.14 ; python_version >= "3.9" and python_version < "4.0" docopt==0.6.2 ; python_version >= "3.9" and python_version < "4" -eccodes==1.5.2 ; python_version >= "3.9" and python_version < "4" -entrypoints==0.4 ; python_version >= "3.9" and python_version < "4" +donfig==0.8.1.post0 ; python_version >= "3.9" and python_version < "4" +eccodes==1.7.0 ; python_version >= "3.9" and python_version < "4" envisage==7.0.3 ; python_version >= "3.9" and python_version < "4" -erddapy==2.0.2 ; python_version >= "3.9" and python_version < "4.0" -exceptiongroup==1.1.2 ; python_version >= "3.9" and python_version < "3.11" -execnet==1.9.0 ; python_version >= "3.9" and python_version < "4" -executing==1.2.0 ; python_version >= "3.9" and python_version < "4" -f90nml==1.4.3 ; python_version >= "3.9" and python_version < "4" -fasteners==0.18 ; python_version >= "3.9" and python_version < "4" -fastjsonschema==2.17.1 ; python_version >= "3.9" and python_version < "4" +erddapy==2.2.0 ; python_version >= "3.9" and python_version < "4.0" +exceptiongroup==1.2.0 ; python_version >= "3.9" and python_version < "3.11" +execnet==2.1.1 ; python_version >= "3.9" and python_version < "4" +executing==2.0.1 ; python_version >= "3.9" and python_version < "4" +f90nml==1.4.4 ; python_version >= "3.9" and python_version < "4" +fasteners==0.19 ; python_version >= "3.9" and python_version < "4" and sys_platform != "emscripten" +fastjsonschema==2.19.1 ; python_version >= "3.9" and python_version < "4" findlibs==0.0.5 ; python_version >= "3.9" and python_version < "4" -fiona==1.9.4.post1 ; python_version >= "3.9" and python_version < "4" -fonttools==4.40.0 ; python_version >= "3.9" and python_version < "4" -fsspec==2023.6.0 ; python_version >= "3.9" and python_version < "4" -geopandas==0.13.2 ; python_version >= "3.9" and python_version < "4" -geoviews[recommended]==1.10.0 ; python_version >= "3.9" and python_version < "4" +fiona==1.9.6 ; python_version >= "3.9" and python_version < "4" +fonttools==4.51.0 ; python_version >= "3.9" and python_version < "4" +fsspec==2024.3.1 ; python_version >= "3.9" and python_version < "4" +geopandas==0.14.3 ; python_version >= "3.9" and python_version < "4" +geoviews[recommended]==1.12.0 ; python_version >= "3.9" and python_version < "4" ghp-import==2.1.0 ; python_version >= "3.9" and python_version < "4" -gmsh==4.11.1 ; python_version >= "3.9" and python_version < "4" +gmsh==4.12.2 ; python_version >= "3.9" and python_version < "4" h11==0.14.0 ; python_version >= "3.9" and python_version < "4.0" -holoviews==1.16.2 ; python_version >= "3.9" and python_version < "4" +holoviews==1.18.3 ; python_version >= "3.9" and python_version < "4" html5lib==1.1 ; python_version >= "3.9" and python_version < "4.0" -httpcore==0.17.3 ; python_version >= "3.9" and python_version < "4.0" -httpx==0.24.1 ; python_version >= "3.9" and python_version < "4.0" -hvplot==0.8.4 ; python_version >= "3.9" and python_version < "4" -idna==3.4 ; python_version >= "3.9" and python_version < "4" -importlib-metadata==6.7.0 ; python_version >= "3.9" and python_version < "4" -importlib-resources==5.12.0 ; python_version >= "3.9" and python_version < "4.0" +httpcore==1.0.5 ; python_version >= "3.9" and python_version < "4.0" +httpx==0.27.0 ; python_version >= "3.9" and python_version < "4.0" +hvplot==0.9.2 ; python_version >= "3.9" and python_version < "4" +idna==3.6 ; python_version >= "3.9" and python_version < "4" +importlib-metadata==7.1.0 ; python_version >= "3.9" and python_version < "3.12" +importlib-resources==6.4.0 ; python_version >= "3.9" and python_version < "4.0" iniconfig==2.0.0 ; python_version >= "3.9" and python_version < "4" ipydatawidgets==4.3.2 ; python_version >= "3.9" and python_version < "4" -ipykernel==6.24.0 ; python_version >= "3.9" and python_version < "4" +ipykernel==6.29.4 ; python_version >= "3.9" and python_version < "4" ipympl==0.9.3 ; python_version >= "3.9" and python_version < "4" ipython-genutils==0.2.0 ; python_version >= "3.9" and python_version < "4" -ipython==8.14.0 ; python_version >= "3.9" and python_version < "4" -ipywidgets==7.7.5 ; python_version >= "3.9" and python_version < "4" +ipython==8.18.1 ; python_version >= "3.9" and python_version < "4" +ipywidgets==7.8.1 ; python_version >= "3.9" and python_version < "4" itk-core==5.3.0 ; python_version >= "3.9" and python_version < "4" itk-filtering==5.3.0 ; python_version >= "3.9" and python_version < "4" itk-meshtopolydata==0.10.0 ; python_version >= "3.9" and python_version < "4" itk-numerics==5.3.0 ; python_version >= "3.9" and python_version < "4" itkwidgets==0.32.6 ; python_version >= "3.9" and python_version < "4" -jedi==0.18.2 ; python_version >= "3.9" and python_version < "4" -jinja2==3.1.2 ; python_version >= "3.9" and python_version < "4" -joblib==1.3.1 ; python_version >= "3.9" and python_version < "4" -jsonschema-specifications==2023.6.1 ; python_version >= "3.9" and python_version < "4" -jsonschema==4.18.0 ; python_version >= "3.9" and python_version < "4" -jupyter-client==8.3.0 ; python_version >= "3.9" and python_version < "4" -jupyter-console==6.6.3 ; python_version >= "3.9" and python_version < "4" -jupyter-core==5.3.1 ; python_version >= "3.9" and python_version < "4" -jupyter==1.0.0 ; python_version >= "3.9" and python_version < "4" -jupyterlab-pygments==0.2.2 ; python_version >= "3.9" and python_version < "4" -jupyterlab-widgets==1.1.4 ; python_version >= "3.9" and python_version < "4" -kiwisolver==1.4.4 ; python_version >= "3.9" and python_version < "4" -limits==3.5.0 ; python_version >= "3.9" and python_version < "4.0" -linkify-it-py==2.0.2 ; python_version >= "3.9" and python_version < "4" -llvmlite==0.40.1 ; python_version >= "3.9" and python_version < "4" +jedi==0.19.1 ; python_version >= "3.9" and python_version < "4" +jinja2==3.1.3 ; python_version >= "3.9" and python_version < "4" +joblib==1.3.2 ; python_version >= "3.9" and python_version < "4" +jsonschema-specifications==2023.12.1 ; python_version >= "3.9" and python_version < "4" +jsonschema==4.21.1 ; python_version >= "3.9" and python_version < "4" +jupyter-client==8.6.1 ; python_version >= "3.9" and python_version < "4" +jupyter-core==5.7.2 ; python_version >= "3.9" and python_version < "4" +jupyterlab-pygments==0.3.0 ; python_version >= "3.9" and python_version < "4" +jupyterlab-widgets==1.1.7 ; python_version >= "3.9" and python_version < "4" +kiwisolver==1.4.5 ; python_version >= "3.9" and python_version < "4" +limits==3.10.1 ; python_version >= "3.9" and python_version < "4.0" +linkify-it-py==2.0.3 ; python_version >= "3.9" and python_version < "4" +llvmlite==0.42.0 ; python_version >= "3.9" and python_version < "4" locket==1.0.0 ; python_version >= "3.9" and python_version < "4" -lxml==4.9.3 ; python_version >= "3.9" and python_version < "4.0" +lxml==5.2.1 ; python_version >= "3.9" and python_version < "4.0" markdown-it-py==3.0.0 ; python_version >= "3.9" and python_version < "4" -markdown==3.4.3 ; python_version >= "3.9" and python_version < "4" -markupsafe==2.1.3 ; python_version >= "3.9" and python_version < "4" +markdown==3.6 ; python_version >= "3.9" and python_version < "4" +markupsafe==2.1.5 ; python_version >= "3.9" and python_version < "4" matplotlib-inline==0.1.6 ; python_version >= "3.9" and python_version < "4" -matplotlib==3.7.2 ; python_version >= "3.9" and python_version < "4" +matplotlib==3.8.4 ; python_version >= "3.9" and python_version < "4" mayavi==4.8.1 ; python_version >= "3.9" and python_version < "4" mdit-py-plugins==0.4.0 ; python_version >= "3.9" and python_version < "4" mdurl==0.1.2 ; python_version >= "3.9" and python_version < "4" mergedeep==1.3.4 ; python_version >= "3.9" and python_version < "4" -mistune==3.0.1 ; python_version >= "3.9" and python_version < "4" -mkdocs-autorefs==0.4.1 ; python_version >= "3.9" and python_version < "4" -mkdocs-material-extensions==1.1.1 ; python_version >= "3.9" and python_version < "4" -mkdocs-material==8.5.4 ; python_version >= "3.9" and python_version < "4" -mkdocs==1.3.0 ; python_version >= "3.9" and python_version < "4" -mkdocstrings==0.22.0 ; python_version >= "3.9" and python_version < "4" +mistune==3.0.2 ; python_version >= "3.9" and python_version < "4" +mkdocs-autorefs==1.0.1 ; python_version >= "3.9" and python_version < "4" +mkdocs-material-extensions==1.3.1 ; python_version >= "3.9" and python_version < "4" +mkdocs-material==9.5.17 ; python_version >= "3.9" and python_version < "4" +mkdocs==1.5.3 ; python_version >= "3.9" and python_version < "4" +mkdocstrings==0.24.3 ; python_version >= "3.9" and python_version < "4" multipledispatch==1.0.0 ; python_version >= "3.9" and python_version < "4" mypy-extensions==1.0.0 ; python_version >= "3.9" and python_version < "4" -nbclient==0.8.0 ; python_version >= "3.9" and python_version < "4" -nbconvert==7.6.0 ; python_version >= "3.9" and python_version < "4" -nbformat==5.9.0 ; python_version >= "3.9" and python_version < "4" -nest-asyncio==1.5.6 ; python_version >= "3.9" and python_version < "4" -netcdf4==1.6.4 ; python_version >= "3.9" and python_version < "4" -notebook==6.4.12 ; python_version >= "3.9" and python_version < "4" -numba==0.57.1 ; python_version >= "3.9" and python_version < "4" -numcodecs==0.11.0 ; python_version >= "3.9" and python_version < "4" -numpy==1.24.4 ; python_version >= "3.9" and python_version < "4" -packaging==23.1 ; python_version >= "3.9" and python_version < "4" -pandas==1.5.3 ; python_version >= "3.9" and python_version < "4" -pandocfilters==1.5.0 ; python_version >= "3.9" and python_version < "4" -panel==1.2.0 ; python_version >= "3.9" and python_version < "4" -param==1.13.0 ; python_version >= "3.9" and python_version < "4" -parso==0.8.3 ; python_version >= "3.9" and python_version < "4" -partd==1.4.0 ; python_version >= "3.9" and python_version < "4" -pathspec==0.11.1 ; python_version >= "3.9" and python_version < "4" -pexpect==4.8.0 ; python_version >= "3.9" and python_version < "4" and sys_platform != "win32" -pickleshare==0.7.5 ; python_version >= "3.9" and python_version < "4" -pillow==10.0.0 ; python_version >= "3.9" and python_version < "4" -platformdirs==3.8.0 ; python_version >= "3.9" and python_version < "4" -pluggy==1.2.0 ; python_version >= "3.9" and python_version < "4" -pooch==1.7.0 ; python_version >= "3.9" and python_version < "4" -prometheus-client==0.17.0 ; python_version >= "3.9" and python_version < "4" -prompt-toolkit==3.0.39 ; python_version >= "3.9" and python_version < "4" -psutil==5.9.5 ; python_version >= "3.9" and python_version < "4" +nbclient==0.10.0 ; python_version >= "3.9" and python_version < "4" +nbconvert==7.16.3 ; python_version >= "3.9" and python_version < "4" +nbformat==5.10.4 ; python_version >= "3.9" and python_version < "4" +nest-asyncio==1.6.0 ; python_version >= "3.9" and python_version < "4" +netcdf4==1.6.5 ; python_version >= "3.9" and python_version < "4" +notebook==6.4.13 ; python_version >= "3.9" and python_version < "4" +numba==0.59.1 ; python_version >= "3.9" and python_version < "4" +numcodecs==0.12.1 ; python_version >= "3.9" and python_version < "4" +numpy==1.26.4 ; python_version >= "3.9" and python_version < "4" +packaging==24.0 ; python_version >= "3.9" and python_version < "4" +paginate==0.5.6 ; python_version >= "3.9" and python_version < "4" +pandas==2.2.1 ; python_version >= "3.9" and python_version < "4" +pandocfilters==1.5.1 ; python_version >= "3.9" and python_version < "4" +panel==1.4.0 ; python_version >= "3.9" and python_version < "4" +param==2.1.0 ; python_version >= "3.9" and python_version < "4" +parso==0.8.4 ; python_version >= "3.9" and python_version < "4" +partd==1.4.1 ; python_version >= "3.9" and python_version < "4" +pathspec==0.12.1 ; python_version >= "3.9" and python_version < "4" +pexpect==4.9.0 ; python_version >= "3.9" and python_version < "4" and sys_platform != "win32" +pillow==10.3.0 ; python_version >= "3.9" and python_version < "4" +platformdirs==4.2.0 ; python_version >= "3.9" and python_version < "4" +pluggy==1.4.0 ; python_version >= "3.9" and python_version < "4" +pooch==1.8.1 ; python_version >= "3.9" and python_version < "4" +prometheus-client==0.20.0 ; python_version >= "3.9" and python_version < "4" +prompt-toolkit==3.0.43 ; python_version >= "3.9" and python_version < "4" +psutil==5.9.8 ; python_version >= "3.9" and python_version < "4" ptyprocess==0.7.0 ; python_version >= "3.9" and python_version < "4" and (sys_platform != "win32" or os_name != "nt") pure-eval==0.2.2 ; python_version >= "3.9" and python_version < "4" -pyarrow==12.0.1 ; python_version >= "3.9" and python_version < "4" -pycparser==2.21 ; python_version >= "3.9" and python_version < "4" +pyarrow==15.0.2 ; python_version >= "3.9" and python_version < "4" +pycparser==2.22 ; python_version >= "3.9" and python_version < "4" pyct==0.5.0 ; python_version >= "3.9" and python_version < "4" -pydantic-core==2.1.2 ; python_version >= "3.9" and python_version < "4.0" -pydantic==2.0.2 ; python_version >= "3.9" and python_version < "4.0" +pydantic-core==2.16.3 ; python_version >= "3.9" and python_version < "4.0" +pydantic==2.6.4 ; python_version >= "3.9" and python_version < "4.0" pydap==3.4.1 ; python_version >= "3.9" and python_version < "4" pyface==8.0.0 ; python_version >= "3.9" and python_version < "4" -pygments==2.15.1 ; python_version >= "3.9" and python_version < "4" -pykdtree==1.3.7.post0 ; python_version >= "3.9" and python_version < "4" -pymdown-extensions==10.0.1 ; python_version >= "3.9" and python_version < "4" -pyparsing==3.0.9 ; python_version >= "3.9" and python_version < "4" -pyproj==3.6.0 ; python_version >= "3.9" and python_version < "4" -pyresample==1.27.1 ; python_version >= "3.9" and python_version < "4" +pygments==2.17.2 ; python_version >= "3.9" and python_version < "4" +pykdtree==1.3.11 ; python_version >= "3.9" and python_version < "4" +pymdown-extensions==10.7.1 ; python_version >= "3.9" and python_version < "4" +pyparsing==3.1.2 ; python_version >= "3.9" and python_version < "4" +pyproj==3.6.1 ; python_version >= "3.9" and python_version < "4" +pyresample==1.28.2 ; python_version >= "3.9" and python_version < "4" pyshp==2.3.1 ; python_version >= "3.9" and python_version < "4" -pytest-cov==4.1.0 ; python_version >= "3.9" and python_version < "4" -pytest-xdist==3.3.1 ; python_version >= "3.9" and python_version < "4" -pytest==7.4.0 ; python_version >= "3.9" and python_version < "4" -python-dateutil==2.8.2 ; python_version >= "3.9" and python_version < "4" -pytz==2023.3 ; python_version >= "3.9" and python_version < "4" -pyviz-comms==2.3.2 ; python_version >= "3.9" and python_version < "4" +pytest-cov==5.0.0 ; python_version >= "3.9" and python_version < "4" +pytest-xdist==3.5.0 ; python_version >= "3.9" and python_version < "4" +pytest==8.1.1 ; python_version >= "3.9" and python_version < "4" +python-dateutil==2.9.0.post0 ; python_version >= "3.9" and python_version < "4" +pytz==2024.1 ; python_version >= "3.9" and python_version < "4" +pyviz-comms==3.0.2 ; python_version >= "3.9" and python_version < "4" pywin32==306 ; sys_platform == "win32" and platform_python_implementation != "PyPy" and python_version >= "3.9" and python_version < "4" -pywinpty==2.0.10 ; python_version >= "3.9" and python_version < "4" and os_name == "nt" +pywinpty==2.0.13 ; python_version >= "3.9" and python_version < "4" and os_name == "nt" pyyaml-env-tag==0.1 ; python_version >= "3.9" and python_version < "4" -pyyaml==6.0 ; python_version >= "3.9" and python_version < "4" -pyzmq==25.1.0 ; python_version >= "3.9" and python_version < "4" -qtconsole==5.4.3 ; python_version >= "3.9" and python_version < "4" -qtpy==2.3.1 ; python_version >= "3.9" and python_version < "4" -rasterio==1.3.8 ; python_version >= "3.9" and python_version < "4" -referencing==0.29.1 ; python_version >= "3.9" and python_version < "4" +pyyaml==6.0.1 ; python_version >= "3.9" and python_version < "4" +pyzmq==25.1.2 ; python_version >= "3.9" and python_version < "4" +rasterio==1.3.9 ; python_version >= "3.9" and python_version < "4" +referencing==0.34.0 ; python_version >= "3.9" and python_version < "4" +regex==2023.12.25 ; python_version >= "3.9" and python_version < "4" requests==2.31.0 ; python_version >= "3.9" and python_version < "4" retrying==1.3.4 ; python_version >= "3.9" and python_version < "4" -rioxarray==0.14.1 ; python_version >= "3.9" and python_version < "4" -rpds-py==0.8.8 ; python_version >= "3.9" and python_version < "4" +rioxarray==0.15.0 ; python_version >= "3.9" and python_version < "4" +rpds-py==0.18.0 ; python_version >= "3.9" and python_version < "4" ruamel-yaml-clib==0.2.7 ; python_version >= "3.9" and python_version < "4" -ruamel-yaml==0.17.32 ; python_version >= "3.9" and python_version < "4" -scipy==1.9.3 ; python_version >= "3.9" and python_version < "4" -searvey==0.3.1 ; python_version >= "3.9" and python_version < "4.0" -send2trash==1.8.2 ; python_version >= "3.9" and python_version < "4" -setuptools==68.0.0 ; python_version >= "3.9" and python_version < "4" -shapely==2.0.1 ; python_version >= "3.9" and python_version < "4" +ruamel-yaml==0.18.6 ; python_version >= "3.9" and python_version < "4" +scipy==1.13.0 ; python_version >= "3.9" and python_version < "4" +searvey==0.3.11 ; python_version >= "3.9" and python_version < "4.0" +send2trash==1.8.3 ; python_version >= "3.9" and python_version < "4" +setuptools==69.2.0 ; python_version >= "3.9" and python_version < "4" +shapely==2.0.3 ; python_version >= "3.9" and python_version < "4" six==1.16.0 ; python_version >= "3.9" and python_version < "4" -sniffio==1.3.0 ; python_version >= "3.9" and python_version < "4.0" +sniffio==1.3.1 ; python_version >= "3.9" and python_version < "4.0" snuggs==1.4.7 ; python_version >= "3.9" and python_version < "4" -soupsieve==2.4.1 ; python_version >= "3.9" and python_version < "4" -spatialpandas==0.4.8 ; python_version >= "3.9" and python_version < "4" -stack-data==0.6.2 ; python_version >= "3.9" and python_version < "4" -terminado==0.17.1 ; python_version >= "3.9" and python_version < "4" +soupsieve==2.5 ; python_version >= "3.9" and python_version < "4" +spatialpandas==0.4.10 ; python_version >= "3.9" and python_version < "4" +stack-data==0.6.3 ; python_version >= "3.9" and python_version < "4" +terminado==0.18.1 ; python_version >= "3.9" and python_version < "4" tinycss2==1.2.1 ; python_version >= "3.9" and python_version < "4" -tomli==2.0.1 ; python_version >= "3.9" and python_version < "3.11" -toolz==0.12.0 ; python_version >= "3.9" and python_version < "4" -tornado==6.3.2 ; python_version >= "3.9" and python_version < "4" -tqdm==4.65.0 ; python_version >= "3.9" and python_version < "4" +tomli==2.0.1 ; python_version >= "3.9" and python_full_version <= "3.11.0a6" +toolz==0.12.1 ; python_version >= "3.9" and python_version < "4" +tornado==6.4 ; python_version >= "3.9" and python_version < "4" +tqdm==4.66.2 ; python_version >= "3.9" and python_version < "4" traitlets==5.6.0 ; python_version >= "3.9" and python_version < "4" -traits==6.4.1 ; python_version >= "3.9" and python_version < "4" +traits==6.4.3 ; python_version >= "3.9" and python_version < "4" traitsui==8.0.0 ; python_version >= "3.9" and python_version < "4" traittypes==0.2.1 ; python_version >= "3.9" and python_version < "4" -typing-extensions==4.7.1 ; python_version >= "3.9" and python_version < "4.0" -uc-micro-py==1.0.2 ; python_version >= "3.9" and python_version < "4" -urllib3==2.0.3 ; python_version >= "3.9" and python_version < "4" -vtk==9.2.6 ; python_version >= "3.9" and python_version < "4" -watchdog==3.0.0 ; python_version >= "3.9" and python_version < "4" -wcwidth==0.2.6 ; python_version >= "3.9" and python_version < "4" +typing-extensions==4.11.0 ; python_version >= "3.9" and python_version < "4.0" +tzdata==2024.1 ; python_version >= "3.9" and python_version < "4" +uc-micro-py==1.0.3 ; python_version >= "3.9" and python_version < "4" +urllib3==2.2.1 ; python_version >= "3.9" and python_version < "4" +vtk==9.3.0 ; python_version >= "3.9" and python_version < "4" +watchdog==4.0.0 ; python_version >= "3.9" and python_version < "4" +wcwidth==0.2.13 ; python_version >= "3.9" and python_version < "4" webencodings==0.5.1 ; python_version >= "3.9" and python_version < "4.0" webob==1.8.7 ; python_version >= "3.9" and python_version < "4" -widgetsnbextension==3.6.4 ; python_version >= "3.9" and python_version < "4" -wrapt==1.15.0 ; python_version >= "3.9" and python_version < "4.0" -xarray==2023.6.0 ; python_version >= "3.9" and python_version < "4" -xyzservices==2023.5.0 ; python_version >= "3.9" and python_version < "4" -zarr==2.15.0 ; python_version >= "3.9" and python_version < "4" -zipp==3.15.0 ; python_version >= "3.9" and python_version < "4" -zstandard==0.21.0 ; python_version >= "3.9" and python_version < "4" +widgetsnbextension==3.6.6 ; python_version >= "3.9" and python_version < "4" +wrapt==1.16.0 ; python_version >= "3.9" and python_version < "4.0" +xarray==2024.3.0 ; python_version >= "3.9" and python_version < "4" +xyzservices==2024.4.0 ; python_version >= "3.9" and python_version < "4" +zarr==2.17.2 ; python_version >= "3.9" and python_version < "4" +zipp==3.18.1 ; python_version >= "3.9" and python_version < "3.12" +zstandard==0.22.0 ; python_version >= "3.9" and python_version < "4" diff --git a/locks/requirements-viz.txt b/locks/requirements-viz.txt index b2091610..eca3386a 100644 --- a/locks/requirements-viz.txt +++ b/locks/requirements-viz.txt @@ -1,191 +1,185 @@ affine==2.4.0 ; python_version >= "3.9" and python_version < "4" -annotated-types==0.5.0 ; python_version >= "3.9" and python_version < "4.0" -anyio==3.7.1 ; python_version >= "3.9" and python_version < "4.0" -appnope==0.1.3 ; python_version >= "3.9" and python_version < "4" and (platform_system == "Darwin" or sys_platform == "darwin") +annotated-types==0.6.0 ; python_version >= "3.9" and python_version < "4.0" +anyio==4.3.0 ; python_version >= "3.9" and python_version < "4.0" +appnope==0.1.4 ; python_version >= "3.9" and python_version < "4" and platform_system == "Darwin" apptools==5.2.1 ; python_version >= "3.9" and python_version < "4" argon2-cffi-bindings==21.2.0 ; python_version >= "3.9" and python_version < "4" -argon2-cffi==21.3.0 ; python_version >= "3.9" and python_version < "4" +argon2-cffi==23.1.0 ; python_version >= "3.9" and python_version < "4" asciitree==0.3.3 ; python_version >= "3.9" and python_version < "4" -asttokens==2.2.1 ; python_version >= "3.9" and python_version < "4" -attrs==23.1.0 ; python_version >= "3.9" and python_version < "4" -backcall==0.2.0 ; python_version >= "3.9" and python_version < "4" -beautifulsoup4==4.12.2 ; python_version >= "3.9" and python_version < "4" -bleach==6.0.0 ; python_version >= "3.9" and python_version < "4" -bokeh==3.1.1 ; python_version >= "3.9" and python_version < "4" -cartopy==0.21.1 ; python_version >= "3.9" and python_version < "4" -certifi==2023.5.7 ; python_version >= "3.9" and python_version < "4" -cffi==1.15.1 ; python_version >= "3.9" and python_version < "4" -cfgrib==0.9.10.4 ; python_version >= "3.9" and python_version < "4" -cftime==1.6.2 ; python_version >= "3.9" and python_version < "4" -charset-normalizer==3.1.0 ; python_version >= "3.9" and python_version < "4" +asttokens==2.4.1 ; python_version >= "3.9" and python_version < "4" +attrs==23.2.0 ; python_version >= "3.9" and python_version < "4" +beautifulsoup4==4.12.3 ; python_version >= "3.9" and python_version < "4" +bleach==6.1.0 ; python_version >= "3.9" and python_version < "4" +bokeh==3.4.0 ; python_version >= "3.9" and python_version < "4" +cartopy==0.22.0 ; python_version >= "3.9" and python_version < "4" +certifi==2024.2.2 ; python_version >= "3.9" and python_version < "4" +cffi==1.16.0 ; python_version >= "3.9" and python_version < "4" +cfgrib==0.9.11.0 ; python_version >= "3.9" and python_version < "4" +cftime==1.6.3 ; python_version >= "3.9" and python_version < "4" +charset-normalizer==3.3.2 ; python_version >= "3.9" and python_version < "4" click-plugins==1.1.1 ; python_version >= "3.9" and python_version < "4" -click==8.1.4 ; python_version >= "3.9" and python_version < "4" +click==8.1.7 ; python_version >= "3.9" and python_version < "4" cligj==0.7.2 ; python_version >= "3.9" and python_version < "4" -cloudpickle==2.2.1 ; python_version >= "3.9" and python_version < "4" +cloudpickle==3.0.0 ; python_version >= "3.9" and python_version < "4" colorama==0.4.6 ; python_version >= "3.9" and python_version < "4" and (sys_platform == "win32" or platform_system == "Windows") -colorcet==3.0.1 ; python_version >= "3.9" and python_version < "4" -colorlog==6.7.0 ; python_version >= "3.9" and python_version < "4" -comm==0.1.3 ; python_version >= "3.9" and python_version < "4" +colorcet==3.1.0 ; python_version >= "3.9" and python_version < "4" +colorlog==6.8.2 ; python_version >= "3.9" and python_version < "4" +comm==0.2.2 ; python_version >= "3.9" and python_version < "4" configobj==5.0.8 ; python_version >= "3.9" and python_version < "4" -contourpy==1.1.0 ; python_version >= "3.9" and python_version < "4" -cycler==0.11.0 ; python_version >= "3.9" and python_version < "4" -dask==2023.6.1 ; python_version >= "3.9" and python_version < "4" -dataretrieval==1.0.4 ; python_version >= "3.9" and python_version < "4.0" -datashader==0.15.1 ; python_version >= "3.9" and python_version < "4" -datashape==0.5.2 ; python_version >= "3.9" and python_version < "4" -debugpy==1.6.7 ; python_version >= "3.9" and python_version < "4" +contourpy==1.2.1 ; python_version >= "3.9" and python_version < "4" +cycler==0.12.1 ; python_version >= "3.9" and python_version < "4" +dask==2024.4.1 ; python_version >= "3.9" and python_version < "4" +dataretrieval==1.0.6 ; python_version >= "3.9" and python_version < "4.0" +datashader==0.16.0 ; python_version >= "3.9" and python_version < "4" +debugpy==1.8.1 ; python_version >= "3.9" and python_version < "4" decorator==5.1.1 ; python_version >= "3.9" and python_version < "4" defusedxml==0.7.1 ; python_version >= "3.9" and python_version < "4" deprecated==1.2.14 ; python_version >= "3.9" and python_version < "4.0" docopt==0.6.2 ; python_version >= "3.9" and python_version < "4" -eccodes==1.5.2 ; python_version >= "3.9" and python_version < "4" -entrypoints==0.4 ; python_version >= "3.9" and python_version < "4" +donfig==0.8.1.post0 ; python_version >= "3.9" and python_version < "4" +eccodes==1.7.0 ; python_version >= "3.9" and python_version < "4" envisage==7.0.3 ; python_version >= "3.9" and python_version < "4" -erddapy==2.0.2 ; python_version >= "3.9" and python_version < "4.0" -exceptiongroup==1.1.2 ; python_version >= "3.9" and python_version < "3.11" -executing==1.2.0 ; python_version >= "3.9" and python_version < "4" -f90nml==1.4.3 ; python_version >= "3.9" and python_version < "4" -fasteners==0.18 ; python_version >= "3.9" and python_version < "4" -fastjsonschema==2.17.1 ; python_version >= "3.9" and python_version < "4" +erddapy==2.2.0 ; python_version >= "3.9" and python_version < "4.0" +exceptiongroup==1.2.0 ; python_version >= "3.9" and python_version < "3.11" +executing==2.0.1 ; python_version >= "3.9" and python_version < "4" +f90nml==1.4.4 ; python_version >= "3.9" and python_version < "4" +fasteners==0.19 ; python_version >= "3.9" and python_version < "4" and sys_platform != "emscripten" +fastjsonschema==2.19.1 ; python_version >= "3.9" and python_version < "4" findlibs==0.0.5 ; python_version >= "3.9" and python_version < "4" -fiona==1.9.4.post1 ; python_version >= "3.9" and python_version < "4" -fonttools==4.40.0 ; python_version >= "3.9" and python_version < "4" -fsspec==2023.6.0 ; python_version >= "3.9" and python_version < "4" -geopandas==0.13.2 ; python_version >= "3.9" and python_version < "4" -geoviews[recommended]==1.10.0 ; python_version >= "3.9" and python_version < "4" -gmsh==4.11.1 ; python_version >= "3.9" and python_version < "4" +fiona==1.9.6 ; python_version >= "3.9" and python_version < "4" +fonttools==4.51.0 ; python_version >= "3.9" and python_version < "4" +fsspec==2024.3.1 ; python_version >= "3.9" and python_version < "4" +geopandas==0.14.3 ; python_version >= "3.9" and python_version < "4" +geoviews[recommended]==1.12.0 ; python_version >= "3.9" and python_version < "4" +gmsh==4.12.2 ; python_version >= "3.9" and python_version < "4" h11==0.14.0 ; python_version >= "3.9" and python_version < "4.0" -holoviews==1.16.2 ; python_version >= "3.9" and python_version < "4" +holoviews==1.18.3 ; python_version >= "3.9" and python_version < "4" html5lib==1.1 ; python_version >= "3.9" and python_version < "4.0" -httpcore==0.17.3 ; python_version >= "3.9" and python_version < "4.0" -httpx==0.24.1 ; python_version >= "3.9" and python_version < "4.0" -hvplot==0.8.4 ; python_version >= "3.9" and python_version < "4" -idna==3.4 ; python_version >= "3.9" and python_version < "4" -importlib-metadata==6.7.0 ; python_version >= "3.9" and python_version < "4" -importlib-resources==5.12.0 ; python_version >= "3.9" and python_version < "4.0" +httpcore==1.0.5 ; python_version >= "3.9" and python_version < "4.0" +httpx==0.27.0 ; python_version >= "3.9" and python_version < "4.0" +hvplot==0.9.2 ; python_version >= "3.9" and python_version < "4" +idna==3.6 ; python_version >= "3.9" and python_version < "4" +importlib-metadata==7.1.0 ; python_version >= "3.9" and python_version < "3.12" +importlib-resources==6.4.0 ; python_version >= "3.9" and python_version < "4.0" ipydatawidgets==4.3.2 ; python_version >= "3.9" and python_version < "4" -ipykernel==6.24.0 ; python_version >= "3.9" and python_version < "4" +ipykernel==6.29.4 ; python_version >= "3.9" and python_version < "4" ipympl==0.9.3 ; python_version >= "3.9" and python_version < "4" ipython-genutils==0.2.0 ; python_version >= "3.9" and python_version < "4" -ipython==8.14.0 ; python_version >= "3.9" and python_version < "4" -ipywidgets==7.7.5 ; python_version >= "3.9" and python_version < "4" +ipython==8.18.1 ; python_version >= "3.9" and python_version < "4" +ipywidgets==7.8.1 ; python_version >= "3.9" and python_version < "4" itk-core==5.3.0 ; python_version >= "3.9" and python_version < "4" itk-filtering==5.3.0 ; python_version >= "3.9" and python_version < "4" itk-meshtopolydata==0.10.0 ; python_version >= "3.9" and python_version < "4" itk-numerics==5.3.0 ; python_version >= "3.9" and python_version < "4" itkwidgets==0.32.6 ; python_version >= "3.9" and python_version < "4" -jedi==0.18.2 ; python_version >= "3.9" and python_version < "4" -jinja2==3.1.2 ; python_version >= "3.9" and python_version < "4" -joblib==1.3.1 ; python_version >= "3.9" and python_version < "4" -jsonschema-specifications==2023.6.1 ; python_version >= "3.9" and python_version < "4" -jsonschema==4.18.0 ; python_version >= "3.9" and python_version < "4" -jupyter-client==8.3.0 ; python_version >= "3.9" and python_version < "4" -jupyter-console==6.6.3 ; python_version >= "3.9" and python_version < "4" -jupyter-core==5.3.1 ; python_version >= "3.9" and python_version < "4" -jupyter==1.0.0 ; python_version >= "3.9" and python_version < "4" -jupyterlab-pygments==0.2.2 ; python_version >= "3.9" and python_version < "4" -jupyterlab-widgets==1.1.4 ; python_version >= "3.9" and python_version < "4" -kiwisolver==1.4.4 ; python_version >= "3.9" and python_version < "4" -limits==3.5.0 ; python_version >= "3.9" and python_version < "4.0" -linkify-it-py==2.0.2 ; python_version >= "3.9" and python_version < "4" -llvmlite==0.40.1 ; python_version >= "3.9" and python_version < "4" +jedi==0.19.1 ; python_version >= "3.9" and python_version < "4" +jinja2==3.1.3 ; python_version >= "3.9" and python_version < "4" +joblib==1.3.2 ; python_version >= "3.9" and python_version < "4" +jsonschema-specifications==2023.12.1 ; python_version >= "3.9" and python_version < "4" +jsonschema==4.21.1 ; python_version >= "3.9" and python_version < "4" +jupyter-client==8.6.1 ; python_version >= "3.9" and python_version < "4" +jupyter-core==5.7.2 ; python_version >= "3.9" and python_version < "4" +jupyterlab-pygments==0.3.0 ; python_version >= "3.9" and python_version < "4" +jupyterlab-widgets==1.1.7 ; python_version >= "3.9" and python_version < "4" +kiwisolver==1.4.5 ; python_version >= "3.9" and python_version < "4" +limits==3.10.1 ; python_version >= "3.9" and python_version < "4.0" +linkify-it-py==2.0.3 ; python_version >= "3.9" and python_version < "4" +llvmlite==0.42.0 ; python_version >= "3.9" and python_version < "4" locket==1.0.0 ; python_version >= "3.9" and python_version < "4" -lxml==4.9.3 ; python_version >= "3.9" and python_version < "4.0" +lxml==5.2.1 ; python_version >= "3.9" and python_version < "4.0" markdown-it-py==3.0.0 ; python_version >= "3.9" and python_version < "4" -markdown==3.4.3 ; python_version >= "3.9" and python_version < "4" -markupsafe==2.1.3 ; python_version >= "3.9" and python_version < "4" +markdown==3.6 ; python_version >= "3.9" and python_version < "4" +markupsafe==2.1.5 ; python_version >= "3.9" and python_version < "4" matplotlib-inline==0.1.6 ; python_version >= "3.9" and python_version < "4" -matplotlib==3.7.2 ; python_version >= "3.9" and python_version < "4" +matplotlib==3.8.4 ; python_version >= "3.9" and python_version < "4" mayavi==4.8.1 ; python_version >= "3.9" and python_version < "4" mdit-py-plugins==0.4.0 ; python_version >= "3.9" and python_version < "4" mdurl==0.1.2 ; python_version >= "3.9" and python_version < "4" -mistune==3.0.1 ; python_version >= "3.9" and python_version < "4" +mistune==3.0.2 ; python_version >= "3.9" and python_version < "4" multipledispatch==1.0.0 ; python_version >= "3.9" and python_version < "4" -nbclient==0.8.0 ; python_version >= "3.9" and python_version < "4" -nbconvert==7.6.0 ; python_version >= "3.9" and python_version < "4" -nbformat==5.9.0 ; python_version >= "3.9" and python_version < "4" -nest-asyncio==1.5.6 ; python_version >= "3.9" and python_version < "4" -netcdf4==1.6.4 ; python_version >= "3.9" and python_version < "4" -notebook==6.4.12 ; python_version >= "3.9" and python_version < "4" -numba==0.57.1 ; python_version >= "3.9" and python_version < "4" -numcodecs==0.11.0 ; python_version >= "3.9" and python_version < "4" -numpy==1.24.4 ; python_version >= "3.9" and python_version < "4" -packaging==23.1 ; python_version >= "3.9" and python_version < "4" -pandas==1.5.3 ; python_version >= "3.9" and python_version < "4" -pandocfilters==1.5.0 ; python_version >= "3.9" and python_version < "4" -panel==1.2.0 ; python_version >= "3.9" and python_version < "4" -param==1.13.0 ; python_version >= "3.9" and python_version < "4" -parso==0.8.3 ; python_version >= "3.9" and python_version < "4" -partd==1.4.0 ; python_version >= "3.9" and python_version < "4" -pexpect==4.8.0 ; python_version >= "3.9" and python_version < "4" and sys_platform != "win32" -pickleshare==0.7.5 ; python_version >= "3.9" and python_version < "4" -pillow==10.0.0 ; python_version >= "3.9" and python_version < "4" -platformdirs==3.8.0 ; python_version >= "3.9" and python_version < "4" -pooch==1.7.0 ; python_version >= "3.9" and python_version < "4" -prometheus-client==0.17.0 ; python_version >= "3.9" and python_version < "4" -prompt-toolkit==3.0.39 ; python_version >= "3.9" and python_version < "4" -psutil==5.9.5 ; python_version >= "3.9" and python_version < "4" +nbclient==0.10.0 ; python_version >= "3.9" and python_version < "4" +nbconvert==7.16.3 ; python_version >= "3.9" and python_version < "4" +nbformat==5.10.4 ; python_version >= "3.9" and python_version < "4" +nest-asyncio==1.6.0 ; python_version >= "3.9" and python_version < "4" +netcdf4==1.6.5 ; python_version >= "3.9" and python_version < "4" +notebook==6.4.13 ; python_version >= "3.9" and python_version < "4" +numba==0.59.1 ; python_version >= "3.9" and python_version < "4" +numcodecs==0.12.1 ; python_version >= "3.9" and python_version < "4" +numpy==1.26.4 ; python_version >= "3.9" and python_version < "4" +packaging==24.0 ; python_version >= "3.9" and python_version < "4" +pandas==2.2.1 ; python_version >= "3.9" and python_version < "4" +pandocfilters==1.5.1 ; python_version >= "3.9" and python_version < "4" +panel==1.4.0 ; python_version >= "3.9" and python_version < "4" +param==2.1.0 ; python_version >= "3.9" and python_version < "4" +parso==0.8.4 ; python_version >= "3.9" and python_version < "4" +partd==1.4.1 ; python_version >= "3.9" and python_version < "4" +pexpect==4.9.0 ; python_version >= "3.9" and python_version < "4" and sys_platform != "win32" +pillow==10.3.0 ; python_version >= "3.9" and python_version < "4" +platformdirs==4.2.0 ; python_version >= "3.9" and python_version < "4" +pooch==1.8.1 ; python_version >= "3.9" and python_version < "4" +prometheus-client==0.20.0 ; python_version >= "3.9" and python_version < "4" +prompt-toolkit==3.0.43 ; python_version >= "3.9" and python_version < "4" +psutil==5.9.8 ; python_version >= "3.9" and python_version < "4" ptyprocess==0.7.0 ; python_version >= "3.9" and python_version < "4" and (sys_platform != "win32" or os_name != "nt") pure-eval==0.2.2 ; python_version >= "3.9" and python_version < "4" -pyarrow==12.0.1 ; python_version >= "3.9" and python_version < "4" -pycparser==2.21 ; python_version >= "3.9" and python_version < "4" +pyarrow==15.0.2 ; python_version >= "3.9" and python_version < "4" +pycparser==2.22 ; python_version >= "3.9" and python_version < "4" pyct==0.5.0 ; python_version >= "3.9" and python_version < "4" -pydantic-core==2.1.2 ; python_version >= "3.9" and python_version < "4.0" -pydantic==2.0.2 ; python_version >= "3.9" and python_version < "4.0" +pydantic-core==2.16.3 ; python_version >= "3.9" and python_version < "4.0" +pydantic==2.6.4 ; python_version >= "3.9" and python_version < "4.0" pydap==3.4.1 ; python_version >= "3.9" and python_version < "4" pyface==8.0.0 ; python_version >= "3.9" and python_version < "4" -pygments==2.15.1 ; python_version >= "3.9" and python_version < "4" -pykdtree==1.3.7.post0 ; python_version >= "3.9" and python_version < "4" -pyparsing==3.0.9 ; python_version >= "3.9" and python_version < "4" -pyproj==3.6.0 ; python_version >= "3.9" and python_version < "4" -pyresample==1.27.1 ; python_version >= "3.9" and python_version < "4" +pygments==2.17.2 ; python_version >= "3.9" and python_version < "4" +pykdtree==1.3.11 ; python_version >= "3.9" and python_version < "4" +pyparsing==3.1.2 ; python_version >= "3.9" and python_version < "4" +pyproj==3.6.1 ; python_version >= "3.9" and python_version < "4" +pyresample==1.28.2 ; python_version >= "3.9" and python_version < "4" pyshp==2.3.1 ; python_version >= "3.9" and python_version < "4" -python-dateutil==2.8.2 ; python_version >= "3.9" and python_version < "4" -pytz==2023.3 ; python_version >= "3.9" and python_version < "4" -pyviz-comms==2.3.2 ; python_version >= "3.9" and python_version < "4" +python-dateutil==2.9.0.post0 ; python_version >= "3.9" and python_version < "4" +pytz==2024.1 ; python_version >= "3.9" and python_version < "4" +pyviz-comms==3.0.2 ; python_version >= "3.9" and python_version < "4" pywin32==306 ; sys_platform == "win32" and platform_python_implementation != "PyPy" and python_version >= "3.9" and python_version < "4" -pywinpty==2.0.10 ; python_version >= "3.9" and python_version < "4" and os_name == "nt" -pyyaml==6.0 ; python_version >= "3.9" and python_version < "4" -pyzmq==25.1.0 ; python_version >= "3.9" and python_version < "4" -qtconsole==5.4.3 ; python_version >= "3.9" and python_version < "4" -qtpy==2.3.1 ; python_version >= "3.9" and python_version < "4" -rasterio==1.3.8 ; python_version >= "3.9" and python_version < "4" -referencing==0.29.1 ; python_version >= "3.9" and python_version < "4" +pywinpty==2.0.13 ; python_version >= "3.9" and python_version < "4" and os_name == "nt" +pyyaml==6.0.1 ; python_version >= "3.9" and python_version < "4" +pyzmq==25.1.2 ; python_version >= "3.9" and python_version < "4" +rasterio==1.3.9 ; python_version >= "3.9" and python_version < "4" +referencing==0.34.0 ; python_version >= "3.9" and python_version < "4" requests==2.31.0 ; python_version >= "3.9" and python_version < "4" retrying==1.3.4 ; python_version >= "3.9" and python_version < "4" -rioxarray==0.14.1 ; python_version >= "3.9" and python_version < "4" -rpds-py==0.8.8 ; python_version >= "3.9" and python_version < "4" -scipy==1.9.3 ; python_version >= "3.9" and python_version < "4" -searvey==0.3.1 ; python_version >= "3.9" and python_version < "4.0" -send2trash==1.8.2 ; python_version >= "3.9" and python_version < "4" -setuptools==68.0.0 ; python_version >= "3.9" and python_version < "4" -shapely==2.0.1 ; python_version >= "3.9" and python_version < "4" +rioxarray==0.15.0 ; python_version >= "3.9" and python_version < "4" +rpds-py==0.18.0 ; python_version >= "3.9" and python_version < "4" +scipy==1.13.0 ; python_version >= "3.9" and python_version < "4" +searvey==0.3.11 ; python_version >= "3.9" and python_version < "4.0" +send2trash==1.8.3 ; python_version >= "3.9" and python_version < "4" +setuptools==69.2.0 ; python_version >= "3.9" and python_version < "4" +shapely==2.0.3 ; python_version >= "3.9" and python_version < "4" six==1.16.0 ; python_version >= "3.9" and python_version < "4" -sniffio==1.3.0 ; python_version >= "3.9" and python_version < "4.0" +sniffio==1.3.1 ; python_version >= "3.9" and python_version < "4.0" snuggs==1.4.7 ; python_version >= "3.9" and python_version < "4" -soupsieve==2.4.1 ; python_version >= "3.9" and python_version < "4" -spatialpandas==0.4.8 ; python_version >= "3.9" and python_version < "4" -stack-data==0.6.2 ; python_version >= "3.9" and python_version < "4" -terminado==0.17.1 ; python_version >= "3.9" and python_version < "4" +soupsieve==2.5 ; python_version >= "3.9" and python_version < "4" +spatialpandas==0.4.10 ; python_version >= "3.9" and python_version < "4" +stack-data==0.6.3 ; python_version >= "3.9" and python_version < "4" +terminado==0.18.1 ; python_version >= "3.9" and python_version < "4" tinycss2==1.2.1 ; python_version >= "3.9" and python_version < "4" -toolz==0.12.0 ; python_version >= "3.9" and python_version < "4" -tornado==6.3.2 ; python_version >= "3.9" and python_version < "4" -tqdm==4.65.0 ; python_version >= "3.9" and python_version < "4" +toolz==0.12.1 ; python_version >= "3.9" and python_version < "4" +tornado==6.4 ; python_version >= "3.9" and python_version < "4" +tqdm==4.66.2 ; python_version >= "3.9" and python_version < "4" traitlets==5.6.0 ; python_version >= "3.9" and python_version < "4" -traits==6.4.1 ; python_version >= "3.9" and python_version < "4" +traits==6.4.3 ; python_version >= "3.9" and python_version < "4" traitsui==8.0.0 ; python_version >= "3.9" and python_version < "4" traittypes==0.2.1 ; python_version >= "3.9" and python_version < "4" -typing-extensions==4.7.1 ; python_version >= "3.9" and python_version < "4.0" -uc-micro-py==1.0.2 ; python_version >= "3.9" and python_version < "4" -urllib3==2.0.3 ; python_version >= "3.9" and python_version < "4" -vtk==9.2.6 ; python_version >= "3.9" and python_version < "4" -wcwidth==0.2.6 ; python_version >= "3.9" and python_version < "4" +typing-extensions==4.11.0 ; python_version >= "3.9" and python_version < "4.0" +tzdata==2024.1 ; python_version >= "3.9" and python_version < "4" +uc-micro-py==1.0.3 ; python_version >= "3.9" and python_version < "4" +urllib3==2.2.1 ; python_version >= "3.9" and python_version < "4" +vtk==9.3.0 ; python_version >= "3.9" and python_version < "4" +wcwidth==0.2.13 ; python_version >= "3.9" and python_version < "4" webencodings==0.5.1 ; python_version >= "3.9" and python_version < "4.0" webob==1.8.7 ; python_version >= "3.9" and python_version < "4" -widgetsnbextension==3.6.4 ; python_version >= "3.9" and python_version < "4" -wrapt==1.15.0 ; python_version >= "3.9" and python_version < "4.0" -xarray==2023.6.0 ; python_version >= "3.9" and python_version < "4" -xyzservices==2023.5.0 ; python_version >= "3.9" and python_version < "4" -zarr==2.15.0 ; python_version >= "3.9" and python_version < "4" -zipp==3.15.0 ; python_version >= "3.9" and python_version < "4" -zstandard==0.21.0 ; python_version >= "3.9" and python_version < "4" +widgetsnbextension==3.6.6 ; python_version >= "3.9" and python_version < "4" +wrapt==1.16.0 ; python_version >= "3.9" and python_version < "4.0" +xarray==2024.3.0 ; python_version >= "3.9" and python_version < "4" +xyzservices==2024.4.0 ; python_version >= "3.9" and python_version < "4" +zarr==2.17.2 ; python_version >= "3.9" and python_version < "4" +zipp==3.18.1 ; python_version >= "3.9" and python_version < "3.12" +zstandard==0.22.0 ; python_version >= "3.9" and python_version < "4" diff --git a/locks/requirements.txt b/locks/requirements.txt index 3424a896..c2cb6ce5 100644 --- a/locks/requirements.txt +++ b/locks/requirements.txt @@ -1,94 +1,96 @@ affine==2.4.0 ; python_version >= "3.9" and python_version < "4" -annotated-types==0.5.0 ; python_version >= "3.9" and python_version < "4.0" -anyio==3.7.1 ; python_version >= "3.9" and python_version < "4.0" +annotated-types==0.6.0 ; python_version >= "3.9" and python_version < "4.0" +anyio==4.3.0 ; python_version >= "3.9" and python_version < "4.0" asciitree==0.3.3 ; python_version >= "3.9" and python_version < "4" -attrs==23.1.0 ; python_version >= "3.9" and python_version < "4" -beautifulsoup4==4.12.2 ; python_version >= "3.9" and python_version < "4" -cartopy==0.21.1 ; python_version >= "3.9" and python_version < "4" -certifi==2023.5.7 ; python_version >= "3.9" and python_version < "4" -cffi==1.15.1 ; python_version >= "3.9" and python_version < "4" -cfgrib==0.9.10.4 ; python_version >= "3.9" and python_version < "4" -cftime==1.6.2 ; python_version >= "3.9" and python_version < "4" -charset-normalizer==3.1.0 ; python_version >= "3.9" and python_version < "4" +attrs==23.2.0 ; python_version >= "3.9" and python_version < "4" +beautifulsoup4==4.12.3 ; python_version >= "3.9" and python_version < "4" +cartopy==0.22.0 ; python_version >= "3.9" and python_version < "4" +certifi==2024.2.2 ; python_version >= "3.9" and python_version < "4" +cffi==1.16.0 ; python_version >= "3.9" and python_version < "4" +cfgrib==0.9.11.0 ; python_version >= "3.9" and python_version < "4" +cftime==1.6.3 ; python_version >= "3.9" and python_version < "4" +charset-normalizer==3.3.2 ; python_version >= "3.9" and python_version < "4" click-plugins==1.1.1 ; python_version >= "3.9" and python_version < "4" -click==8.1.4 ; python_version >= "3.9" and python_version < "4" +click==8.1.7 ; python_version >= "3.9" and python_version < "4" cligj==0.7.2 ; python_version >= "3.9" and python_version < "4" -cloudpickle==2.2.1 ; python_version >= "3.9" and python_version < "4" +cloudpickle==3.0.0 ; python_version >= "3.9" and python_version < "4" colorama==0.4.6 ; python_version >= "3.9" and python_version < "4" and (sys_platform == "win32" or platform_system == "Windows") -colorlog==6.7.0 ; python_version >= "3.9" and python_version < "4" +colorlog==6.8.2 ; python_version >= "3.9" and python_version < "4" configobj==5.0.8 ; python_version >= "3.9" and python_version < "4" -contourpy==1.1.0 ; python_version >= "3.9" and python_version < "4" -cycler==0.11.0 ; python_version >= "3.9" and python_version < "4" -dask==2023.6.1 ; python_version >= "3.9" and python_version < "4" -dataretrieval==1.0.4 ; python_version >= "3.9" and python_version < "4.0" +contourpy==1.2.1 ; python_version >= "3.9" and python_version < "4" +cycler==0.12.1 ; python_version >= "3.9" and python_version < "4" +dask==2024.4.1 ; python_version >= "3.9" and python_version < "4" +dataretrieval==1.0.6 ; python_version >= "3.9" and python_version < "4.0" deprecated==1.2.14 ; python_version >= "3.9" and python_version < "4.0" docopt==0.6.2 ; python_version >= "3.9" and python_version < "4" -eccodes==1.5.2 ; python_version >= "3.9" and python_version < "4" -entrypoints==0.4 ; python_version >= "3.9" and python_version < "4" -erddapy==2.0.2 ; python_version >= "3.9" and python_version < "4.0" -exceptiongroup==1.1.2 ; python_version >= "3.9" and python_version < "3.11" -f90nml==1.4.3 ; python_version >= "3.9" and python_version < "4" -fasteners==0.18 ; python_version >= "3.9" and python_version < "4" +donfig==0.8.1.post0 ; python_version >= "3.9" and python_version < "4" +eccodes==1.7.0 ; python_version >= "3.9" and python_version < "4" +erddapy==2.2.0 ; python_version >= "3.9" and python_version < "4.0" +exceptiongroup==1.2.0 ; python_version >= "3.9" and python_version < "3.11" +f90nml==1.4.4 ; python_version >= "3.9" and python_version < "4" +fasteners==0.19 ; python_version >= "3.9" and python_version < "4" and sys_platform != "emscripten" findlibs==0.0.5 ; python_version >= "3.9" and python_version < "4" -fiona==1.9.4.post1 ; python_version >= "3.9" and python_version < "4" -fonttools==4.40.0 ; python_version >= "3.9" and python_version < "4" -fsspec==2023.6.0 ; python_version >= "3.9" and python_version < "4" -geopandas==0.13.2 ; python_version >= "3.9" and python_version < "4" -gmsh==4.11.1 ; python_version >= "3.9" and python_version < "4" +fiona==1.9.6 ; python_version >= "3.9" and python_version < "4" +fonttools==4.51.0 ; python_version >= "3.9" and python_version < "4" +fsspec==2024.3.1 ; python_version >= "3.9" and python_version < "4" +geopandas==0.14.3 ; python_version >= "3.9" and python_version < "4" +gmsh==4.12.2 ; python_version >= "3.9" and python_version < "4" h11==0.14.0 ; python_version >= "3.9" and python_version < "4.0" html5lib==1.1 ; python_version >= "3.9" and python_version < "4.0" -httpcore==0.17.3 ; python_version >= "3.9" and python_version < "4.0" -httpx==0.24.1 ; python_version >= "3.9" and python_version < "4.0" -idna==3.4 ; python_version >= "3.9" and python_version < "4" -importlib-metadata==6.7.0 ; python_version >= "3.9" and python_version < "4" -importlib-resources==5.12.0 ; python_version >= "3.9" and python_version < "4.0" -jinja2==3.1.2 ; python_version >= "3.9" and python_version < "4" -joblib==1.3.1 ; python_version >= "3.9" and python_version < "4" -kiwisolver==1.4.4 ; python_version >= "3.9" and python_version < "4" -limits==3.5.0 ; python_version >= "3.9" and python_version < "4.0" -llvmlite==0.40.1 ; python_version >= "3.9" and python_version < "4" +httpcore==1.0.5 ; python_version >= "3.9" and python_version < "4.0" +httpx==0.27.0 ; python_version >= "3.9" and python_version < "4.0" +idna==3.6 ; python_version >= "3.9" and python_version < "4" +importlib-metadata==7.1.0 ; python_version >= "3.9" and python_version < "3.12" +importlib-resources==6.4.0 ; python_version >= "3.9" and python_version < "4.0" +jinja2==3.1.3 ; python_version >= "3.9" and python_version < "4" +joblib==1.3.2 ; python_version >= "3.9" and python_version < "4" +kiwisolver==1.4.5 ; python_version >= "3.9" and python_version < "4" +limits==3.10.1 ; python_version >= "3.9" and python_version < "4.0" +llvmlite==0.42.0 ; python_version >= "3.9" and python_version < "4" locket==1.0.0 ; python_version >= "3.9" and python_version < "4" -lxml==4.9.3 ; python_version >= "3.9" and python_version < "4.0" -markupsafe==2.1.3 ; python_version >= "3.9" and python_version < "4" -matplotlib==3.7.2 ; python_version >= "3.9" and python_version < "4" -netcdf4==1.6.4 ; python_version >= "3.9" and python_version < "4" -numcodecs==0.11.0 ; python_version >= "3.9" and python_version < "4" -numpy==1.24.4 ; python_version >= "3.9" and python_version < "4" -packaging==23.1 ; python_version >= "3.9" and python_version < "4" -pandas==1.5.3 ; python_version >= "3.9" and python_version < "4" -partd==1.4.0 ; python_version >= "3.9" and python_version < "4" -pillow==10.0.0 ; python_version >= "3.9" and python_version < "4" -psutil==5.9.5 ; python_version >= "3.9" and python_version < "4" -pycparser==2.21 ; python_version >= "3.9" and python_version < "4" -pydantic-core==2.1.2 ; python_version >= "3.9" and python_version < "4.0" -pydantic==2.0.2 ; python_version >= "3.9" and python_version < "4.0" +lxml==5.2.1 ; python_version >= "3.9" and python_version < "4.0" +markupsafe==2.1.5 ; python_version >= "3.9" and python_version < "4" +matplotlib==3.8.4 ; python_version >= "3.9" and python_version < "4" +netcdf4==1.6.5 ; python_version >= "3.9" and python_version < "4" +numcodecs==0.12.1 ; python_version >= "3.9" and python_version < "4" +numpy==1.26.4 ; python_version >= "3.9" and python_version < "4" +packaging==24.0 ; python_version >= "3.9" and python_version < "4" +pandas==2.2.1 ; python_version >= "3.9" and python_version < "4" +partd==1.4.1 ; python_version >= "3.9" and python_version < "4" +pillow==10.3.0 ; python_version >= "3.9" and python_version < "4" +platformdirs==4.2.0 ; python_version >= "3.9" and python_version < "4" +psutil==5.9.8 ; python_version >= "3.9" and python_version < "4" +pycparser==2.22 ; python_version >= "3.9" and python_version < "4" +pydantic-core==2.16.3 ; python_version >= "3.9" and python_version < "4.0" +pydantic==2.6.4 ; python_version >= "3.9" and python_version < "4.0" pydap==3.4.1 ; python_version >= "3.9" and python_version < "4" -pykdtree==1.3.7.post0 ; python_version >= "3.9" and python_version < "4" -pyparsing==3.0.9 ; python_version >= "3.9" and python_version < "4" -pyproj==3.6.0 ; python_version >= "3.9" and python_version < "4" -pyresample==1.27.1 ; python_version >= "3.9" and python_version < "4" +pykdtree==1.3.11 ; python_version >= "3.9" and python_version < "4" +pyparsing==3.1.2 ; python_version >= "3.9" and python_version < "4" +pyproj==3.6.1 ; python_version >= "3.9" and python_version < "4" +pyresample==1.28.2 ; python_version >= "3.9" and python_version < "4" pyshp==2.3.1 ; python_version >= "3.9" and python_version < "4" -python-dateutil==2.8.2 ; python_version >= "3.9" and python_version < "4" -pytz==2023.3 ; python_version >= "3.9" and python_version < "4" -pyyaml==6.0 ; python_version >= "3.9" and python_version < "4" -rasterio==1.3.8 ; python_version >= "3.9" and python_version < "4" +python-dateutil==2.9.0.post0 ; python_version >= "3.9" and python_version < "4" +pytz==2024.1 ; python_version >= "3.9" and python_version < "4" +pyyaml==6.0.1 ; python_version >= "3.9" and python_version < "4" +rasterio==1.3.9 ; python_version >= "3.9" and python_version < "4" requests==2.31.0 ; python_version >= "3.9" and python_version < "4" -rioxarray==0.14.1 ; python_version >= "3.9" and python_version < "4" -scipy==1.9.3 ; python_version >= "3.9" and python_version < "4" -searvey==0.3.1 ; python_version >= "3.9" and python_version < "4.0" -setuptools==68.0.0 ; python_version >= "3.9" and python_version < "4" -shapely==2.0.1 ; python_version >= "3.9" and python_version < "4" +rioxarray==0.15.0 ; python_version >= "3.9" and python_version < "4" +scipy==1.13.0 ; python_version >= "3.9" and python_version < "4" +searvey==0.3.11 ; python_version >= "3.9" and python_version < "4.0" +setuptools==69.2.0 ; python_version >= "3.9" and python_version < "4" +shapely==2.0.3 ; python_version >= "3.9" and python_version < "4" six==1.16.0 ; python_version >= "3.9" and python_version < "4" -sniffio==1.3.0 ; python_version >= "3.9" and python_version < "4.0" +sniffio==1.3.1 ; python_version >= "3.9" and python_version < "4.0" snuggs==1.4.7 ; python_version >= "3.9" and python_version < "4" -soupsieve==2.4.1 ; python_version >= "3.9" and python_version < "4" -toolz==0.12.0 ; python_version >= "3.9" and python_version < "4" -tqdm==4.65.0 ; python_version >= "3.9" and python_version < "4" -typing-extensions==4.7.1 ; python_version >= "3.9" and python_version < "4.0" -urllib3==2.0.3 ; python_version >= "3.9" and python_version < "4" +soupsieve==2.5 ; python_version >= "3.9" and python_version < "4" +toolz==0.12.1 ; python_version >= "3.9" and python_version < "4" +tqdm==4.66.2 ; python_version >= "3.9" and python_version < "4" +typing-extensions==4.11.0 ; python_version >= "3.9" and python_version < "4.0" +tzdata==2024.1 ; python_version >= "3.9" and python_version < "4" +urllib3==2.2.1 ; python_version >= "3.9" and python_version < "4" webencodings==0.5.1 ; python_version >= "3.9" and python_version < "4.0" webob==1.8.7 ; python_version >= "3.9" and python_version < "4" -wrapt==1.15.0 ; python_version >= "3.9" and python_version < "4.0" -xarray==2023.6.0 ; python_version >= "3.9" and python_version < "4" -zarr==2.15.0 ; python_version >= "3.9" and python_version < "4" -zipp==3.15.0 ; python_version >= "3.9" and python_version < "4" +wrapt==1.16.0 ; python_version >= "3.9" and python_version < "4.0" +xarray==2024.3.0 ; python_version >= "3.9" and python_version < "4" +zarr==2.17.2 ; python_version >= "3.9" and python_version < "4" +zipp==3.18.1 ; python_version >= "3.9" and python_version < "3.12" diff --git a/poetry.lock b/poetry.lock index 6a5bc926..f0a2f4fd 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. [[package]] name = "affine" @@ -17,45 +17,46 @@ test = ["pytest (>=4.6)", "pytest-cov"] [[package]] name = "annotated-types" -version = "0.5.0" +version = "0.6.0" description = "Reusable constraint types to use with typing.Annotated" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "annotated_types-0.5.0-py3-none-any.whl", hash = "sha256:58da39888f92c276ad970249761ebea80ba544b77acddaa1a4d6cf78287d45fd"}, - {file = "annotated_types-0.5.0.tar.gz", hash = "sha256:47cdc3490d9ac1506ce92c7aaa76c579dc3509ff11e098fc867e5130ab7be802"}, + {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"}, + {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"}, ] [[package]] name = "anyio" -version = "3.7.1" +version = "4.3.0" description = "High level compatibility layer for multiple asynchronous event loop 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Mon, 8 Apr 2024 19:59:32 +0300 Subject: [PATCH 11/13] ci: Run tests on 3.12 too --- .github/workflows/conda_pip.yml | 8 +- dependencies/python3.12.yml | 5 + environments/base-p3.12.yml | 36 + environments/binary-p3.12.yml | 14 + environments/full-p3.12.yml | 54 + environments/viz-p3.12.yml | 43 + locks/binary-p3.10.yml | 8638 +++++++++------- locks/binary-p3.11.yml | 8638 +++++++++------- locks/binary-p3.12.yml | 6550 +++++++++++++ locks/binary-p3.9.yml | 8644 ++++++++++------- locks/conda-macos-latest-delft3d_mpich.lock | 63 +- locks/conda-macos-latest-delft3d_openmpi.lock | 64 +- locks/conda-macos-latest-schism_mpich.lock | 76 +- locks/conda-macos-latest-schism_openmpi.lock | 77 +- locks/conda-ubuntu-latest-binary-p3.10.lock | 307 +- locks/conda-ubuntu-latest-binary-p3.11.lock | 307 +- locks/conda-ubuntu-latest-binary-p3.12.lock | 234 + locks/conda-ubuntu-latest-binary-p3.9.lock | 307 +- locks/conda-ubuntu-latest-delft3d_mpich.lock | 67 +- .../conda-ubuntu-latest-delft3d_openmpi.lock | 68 +- locks/conda-ubuntu-latest-schism_mpich.lock | 85 +- locks/conda-ubuntu-latest-schism_openmpi.lock | 84 +- locks/delft3d_mpich.yml | 1614 +-- locks/delft3d_openmpi.yml | 1632 ++-- locks/requirements-ci.txt | 4 +- locks/requirements-full.txt | 4 +- locks/requirements-viz.txt | 2 + locks/requirements.txt | 2 + locks/schism_mpich.yml | 2039 ++-- locks/schism_openmpi.yml | 2069 ++-- poetry.lock | 122 +- pyproject.toml | 3 +- scripts/generate_envs.sh | 4 + scripts/generate_locks.sh | 3 + scripts/merge_environment_yaml.py | 19 +- 35 files changed, 27162 insertions(+), 14724 deletions(-) create mode 100644 dependencies/python3.12.yml create mode 100644 environments/base-p3.12.yml create mode 100644 environments/binary-p3.12.yml create mode 100644 environments/full-p3.12.yml create mode 100644 environments/viz-p3.12.yml create mode 100644 locks/binary-p3.12.yml create mode 100644 locks/conda-ubuntu-latest-binary-p3.12.lock diff --git a/.github/workflows/conda_pip.yml b/.github/workflows/conda_pip.yml index a688204f..ed67d642 100644 --- a/.github/workflows/conda_pip.yml +++ b/.github/workflows/conda_pip.yml @@ -58,7 +58,7 @@ jobs: # mpi: [ "mpich", "openmpi" ] os: [ "ubuntu-latest"] mpi: [ "openmpi" ] - python: [ "3.9", "3.10", "3.11" ] + python: [ "3.9", "3.10", "3.11", "3.12" ] env: SCHISM_ENV: "SCHISM_ENV" @@ -149,6 +149,12 @@ jobs: if: steps.cache-PYPOSEIDON_ENV.outputs.cache-hit != 'true' run: micromamba create --yes --name ${PYPOSEIDON_ENV} -f ${PYPOSEIDON_LOCK} + - name: "Check schism version" + run: | + eval "$(micromamba shell hook)" + micromamba activate "${SCHISM_ENV}" + schism -v + - name: "Install python dependencies" run: | eval "$(micromamba shell hook)" diff --git a/dependencies/python3.12.yml b/dependencies/python3.12.yml new file mode 100644 index 00000000..8ef45069 --- /dev/null +++ b/dependencies/python3.12.yml @@ -0,0 +1,5 @@ +channels: + - gbrey + - conda-forge +dependencies: + - python=3.12 diff --git a/environments/base-p3.12.yml b/environments/base-p3.12.yml new file mode 100644 index 00000000..2b201c38 --- /dev/null +++ b/environments/base-p3.12.yml @@ -0,0 +1,36 @@ +channels: + - conda-forge + - gbrey +dependencies: + - cartopy + - cfgrib + - colorlog + - compilers + - dask + - eccodes + - f90nml + - ffmpeg + - gdal + - geopandas + - geos + - gmsh>=4.9.3 + - jigsaw>=0.9.12 + - jinja2 + - netCDF4 + - numpy + - pandas<2 + - pip + - proj + - psutil + - pydap>=3.3.0 + - pyresample + - python-gmsh + - python=3.12 + - rasterio + - requests + - rioxarray + - scipy + - searvey + - shapely>=2 + - tqdm + - xarray diff --git a/environments/binary-p3.12.yml b/environments/binary-p3.12.yml new file mode 100644 index 00000000..1cff5b0f --- /dev/null +++ b/environments/binary-p3.12.yml @@ -0,0 +1,14 @@ +channels: + - conda-forge + - gbrey +dependencies: + - compilers + - eccodes + - ffmpeg + - gdal + - geos + - gmsh>=4.9.3 + - jigsaw>=0.9.12 + - pip + - proj + - python=3.12 diff --git a/environments/full-p3.12.yml b/environments/full-p3.12.yml new file mode 100644 index 00000000..d9c38fce --- /dev/null +++ b/environments/full-p3.12.yml @@ -0,0 +1,54 @@ +channels: + - conda-forge + - gbrey +dependencies: + - black<24.0 + - bump2version + - cartopy + - cfgrib + - colorlog + - compilers + - dask + - eccodes + - f90nml + - ffmpeg + - gdal + - geopandas + - geos + - geoviews + - gmsh>=4.9.3 + - holoviews + - hvplot + - ipykernel + - ipympl + - jigsaw>=0.9.12 + - jinja2 + - matplotlib>=3.3 + - mayavi + - mkdocs + - mkdocs-material + - mkdocstrings + - netCDF4 + - numpy + - pandas<2 + - pip + - proj + - psutil + - pydap>=3.3.0 + - pymdown-extensions + - pyresample + - pytest + - pytest-cov + - pytest-xdist + - python-gmsh + - python=3.12 + - rasterio + - requests + - rioxarray + - ruamel.yaml + - scipy + - searvey + - shapely>=2 + - spatialpandas + - tqdm + - xarray diff --git a/environments/viz-p3.12.yml b/environments/viz-p3.12.yml new file mode 100644 index 00000000..b4a02551 --- /dev/null +++ b/environments/viz-p3.12.yml @@ -0,0 +1,43 @@ +channels: + - conda-forge + - gbrey +dependencies: + - cartopy + - cfgrib + - colorlog + - compilers + - dask + - eccodes + - f90nml + - ffmpeg + - gdal + - geopandas + - geos + - geoviews + - gmsh>=4.9.3 + - holoviews + - hvplot + - ipympl + - jigsaw>=0.9.12 + - jinja2 + - matplotlib>=3.3 + - mayavi + - netCDF4 + - numpy + - pandas<2 + - pip + - proj + - psutil + - pydap>=3.3.0 + - pyresample + - python-gmsh + - python=3.12 + - rasterio + - requests + - rioxarray + - scipy + - searvey + - shapely>=2 + - spatialpandas + - tqdm + - xarray diff --git a/locks/binary-p3.10.yml b/locks/binary-p3.10.yml index db8959c9..a1999b8a 100644 --- a/locks/binary-p3.10.yml +++ b/locks/binary-p3.10.yml @@ -1,24 +1,25 @@ -# This lock file was generated by conda-lock (https://github.com/conda-incubator/conda-lock). DO NOT EDIT! +# This lock file was generated by conda-lock (https://github.com/conda/conda-lock). DO NOT EDIT! # # A "lock file" contains a concrete list of package versions (with checksums) to be installed. Unlike # e.g. `conda env create`, the resulting environment will not change as new package versions become # available, unless you explicitly update the lock file. # # Install this environment as "YOURENV" with: -# conda-lock install -n YOURENV --file binary-p3.10.yml +# conda-lock install -n YOURENV binary-p3.10.yml # To update a single package to the latest version compatible with the version constraints in the source: # conda-lock lock --lockfile binary-p3.10.yml --update PACKAGE # To re-solve the entire environment, e.g. after changing a version constraint in the source file: # conda-lock -f ../environments/binary-p3.10.yml -f /home/panos/Prog/poseidon/pyPoseidon/environments/binary-p3.10.yml --lockfile binary-p3.10.yml +version: 1 metadata: + content_hash: + linux-64: b0127cb9c2ffab09d1a7c98ec3e59ae33912981bb5657b96571e88d2a70be142 + osx-64: 6eb4ad6f83dfb094927aa07177897b9b0f7cdb3de987846b6004c57c754c59e8 channels: - url: conda-forge used_env_vars: [] - url: gbrey used_env_vars: 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DO NOT EDIT! +# This lock file was generated by conda-lock (https://github.com/conda/conda-lock). DO NOT EDIT! # # A "lock file" contains a concrete list of package versions (with checksums) to be installed. Unlike # e.g. `conda env create`, the resulting environment will not change as new package versions become # available, unless you explicitly update the lock file. # # Install this environment as "YOURENV" with: -# conda-lock install -n YOURENV --file binary-p3.11.yml +# conda-lock install -n YOURENV binary-p3.11.yml # To update a single package to the latest version compatible with the version constraints in the source: # conda-lock lock --lockfile binary-p3.11.yml --update PACKAGE # To re-solve the entire environment, e.g. after changing a version constraint in the source file: # conda-lock -f ../environments/binary-p3.11.yml -f /home/panos/Prog/poseidon/pyPoseidon/environments/binary-p3.11.yml --lockfile binary-p3.11.yml +version: 1 metadata: + content_hash: + linux-64: 2ce551995e53e538a9ab0c13a373612b1fbd36cd039c92bb1ee197eca53a3059 + osx-64: 9b30ab7180fe5d9a85cb03f138edeeb79cbe8b099bda70be0cc68d856cc102a8 channels: - url: conda-forge used_env_vars: [] - url: gbrey used_env_vars: 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DO NOT EDIT! +# This lock file was generated by conda-lock (https://github.com/conda/conda-lock). DO NOT EDIT! # # A "lock file" contains a concrete list of package versions (with checksums) to be installed. Unlike # e.g. `conda env create`, the resulting environment will not change as new package versions become # available, unless you explicitly update the lock file. # # Install this environment as "YOURENV" with: -# conda-lock install -n YOURENV --file binary-p3.9.yml +# conda-lock install -n YOURENV binary-p3.9.yml # To update a single package to the latest version compatible with the version constraints in the source: # conda-lock lock --lockfile binary-p3.9.yml --update PACKAGE # To re-solve the entire environment, e.g. after changing a version constraint in the source file: # conda-lock -f ../environments/binary-p3.9.yml -f /home/panos/Prog/poseidon/pyPoseidon/environments/binary-p3.9.yml --lockfile binary-p3.9.yml +version: 1 metadata: + content_hash: + linux-64: ba55ac76de851f52993149a1cb636afc8ad1a951653fb405580a7bb42220ff8a + osx-64: 8cc127644c2bc658bfc1d4fd3242a6aa12bafeee9c6254c3a43fc9ccad86f6fd channels: - url: conda-forge used_env_vars: [] - url: gbrey used_env_vars: [] - 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+https://conda.anaconda.org/conda-forge/osx-64/icu-73.2-hf5e326d_0.conda#5cc301d759ec03f28328428e28f65591 +https://conda.anaconda.org/conda-forge/osx-64/libcxx-16.0.6-hd57cbcb_0.conda#7d6972792161077908b62971802f289a +https://conda.anaconda.org/conda-forge/osx-64/libev-4.33-h10d778d_2.conda#899db79329439820b7e8f8de41bca902 +https://conda.anaconda.org/conda-forge/osx-64/libexpat-2.6.2-h73e2aa4_0.conda#3d1d51c8f716d97c864d12f7af329526 +https://conda.anaconda.org/conda-forge/osx-64/libiconv-1.17-hd75f5a5_2.conda#6c3628d047e151efba7cf08c5e54d1ca +https://conda.anaconda.org/conda-forge/osx-64/libjpeg-turbo-3.0.0-h0dc2134_1.conda#72507f8e3961bc968af17435060b6dd6 https://conda.anaconda.org/conda-forge/osx-64/libuuid-2.38.1-hb7f2c08_0.conda#f33adb6462e96fdbde16cfff2466c010 -https://conda.anaconda.org/conda-forge/osx-64/libzlib-1.2.13-hfd90126_4.tar.bz2#35eb3fce8d51ed3c1fd4122bad48250b -https://conda.anaconda.org/conda-forge/osx-64/llvm-openmp-16.0.5-hff08bdf_0.conda#af8df1a61e8137e3479b0f71d5bd0a49 +https://conda.anaconda.org/conda-forge/osx-64/libzlib-1.2.13-h8a1eda9_5.conda#4a3ad23f6e16f99c04e166767193d700 +https://conda.anaconda.org/conda-forge/osx-64/llvm-openmp-18.1.2-hb6ac08f_0.conda#e7f7e91cfabd8c7172c9ae405214dd68 https://conda.anaconda.org/conda-forge/osx-64/mpi-1.0-openmpi.tar.bz2#8c3bc725bf4d10fc6e56031f7543771f -https://conda.anaconda.org/conda-forge/osx-64/ncurses-6.4-hf0c8a7f_0.conda#c3dbae2411164d9b02c69090a9a91857 +https://conda.anaconda.org/conda-forge/osx-64/ncurses-6.4.20240210-h73e2aa4_0.conda#50f28c512e9ad78589e3eab34833f762 https://conda.anaconda.org/conda-forge/osx-64/xz-5.2.6-h775f41a_0.tar.bz2#a72f9d4ea13d55d745ff1ed594747f10 -https://conda.anaconda.org/conda-forge/osx-64/expat-2.5.0-hf0c8a7f_1.conda#e12630038077877cbb6c7851e139c17c -https://conda.anaconda.org/conda-forge/osx-64/hdf4-4.2.15-h9804679_6.conda#c13d8841112ba7f5931d1d60631394f3 -https://conda.anaconda.org/conda-forge/osx-64/libaec-1.0.6-hf0c8a7f_1.conda#7c0f82f435ab4c48d65dc9b28db2ad9e +https://conda.anaconda.org/conda-forge/osx-64/expat-2.6.2-h73e2aa4_0.conda#dc0882915da2ec74696ad87aa2350f27 +https://conda.anaconda.org/conda-forge/osx-64/hdf4-4.2.15-h8138101_7.conda#7ce543bf38dbfae0de9af112ee178af2 +https://conda.anaconda.org/conda-forge/osx-64/libaec-1.1.3-h73e2aa4_0.conda#66d3c1f6dd4636216b4fca7a748d50eb https://conda.anaconda.org/conda-forge/osx-64/libedit-3.1.20191231-h0678c8f_2.tar.bz2#6016a8a1d0e63cac3de2c352cd40208b -https://conda.anaconda.org/conda-forge/osx-64/libgfortran5-12.2.0-he409387_31.conda#5a544130e584b1f204ac896ff071d5b3 -https://conda.anaconda.org/conda-forge/osx-64/libxml2-2.11.4-hd95e348_0.conda#681f8dda25e73a830d774a37b9839c85 +https://conda.anaconda.org/conda-forge/osx-64/libgfortran5-13.2.0-h2873a65_3.conda#e4fb4d23ec2870ff3c40d10afe305aec 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-https://conda.anaconda.org/conda-forge/osx-64/libgfortran-5.0.0-11_3_0_h97931a8_31.conda#97451338600bd9c5b535eb224ef6c471 -https://conda.anaconda.org/conda-forge/osx-64/libnghttp2-1.52.0-he2ab024_0.conda#12ac7d100bf260263e30a019517f42a2 +https://conda.anaconda.org/conda-forge/osx-64/zlib-1.2.13-h8a1eda9_5.conda#75a8a98b1c4671c5d2897975731da42d +https://conda.anaconda.org/conda-forge/osx-64/zstd-1.5.5-h829000d_0.conda#80abc41d0c48b82fe0f04e7f42f5cb7e +https://conda.anaconda.org/conda-forge/osx-64/blosc-1.21.5-heccf04b_0.conda#3003fa6dd18769db1a616982dcee5b40 +https://conda.anaconda.org/conda-forge/osx-64/krb5-1.21.2-hb884880_0.conda#80505a68783f01dc8d7308c075261b2f +https://conda.anaconda.org/conda-forge/osx-64/libgfortran-5.0.0-13_2_0_h97931a8_3.conda#0b6e23a012ee7a9a5f6b244f5a92c1d5 +https://conda.anaconda.org/conda-forge/osx-64/libnghttp2-1.58.0-h64cf6d3_1.conda#faecc55c2a8155d9ff1c0ff9a0fef64f https://conda.anaconda.org/conda-forge/osx-64/libssh2-1.11.0-hd019ec5_0.conda#ca3a72efba692c59a90d4b9fc0dfe774 -https://conda.anaconda.org/conda-forge/osx-64/libzip-1.9.2-h6db710c_1.tar.bz2#ce732d37e479919f3d22b1ccdeb858ac -https://conda.anaconda.org/conda-forge/osx-64/libcurl-8.1.2-hbee3ae8_0.conda#d51e337da844262f9033c9a26452520f -https://conda.anaconda.org/conda-forge/osx-64/openmpi-4.1.5-h4fe9131_101.conda#872ae3493e7196704b34b79aef1128f8 -https://conda.anaconda.org/conda-forge/osx-64/curl-8.1.2-hbee3ae8_0.conda#6cc301a6c2ba26e29949818efdc133ca -https://conda.anaconda.org/conda-forge/osx-64/hdf5-1.14.0-mpi_openmpi_h88dfb0a_3.conda#783f0138fa20e85b1c62b7bde2a4e926 -https://conda.anaconda.org/conda-forge/osx-64/libnetcdf-4.9.2-mpi_openmpi_h45c3e4e_5.conda#ed7903ab974c07d74aea3377a858f607 -https://conda.anaconda.org/conda-forge/osx-64/netcdf-fortran-4.6.1-mpi_openmpi_h35c5e1e_0.conda#65784fd5a38ad6136b493a2381554281 +https://conda.anaconda.org/conda-forge/osx-64/libzip-1.10.1-hc158999_3.conda#6112b3173f3aa2f12a8f40d07a77cc35 +https://conda.anaconda.org/conda-forge/osx-64/libcurl-8.7.1-h726d00d_0.conda#fa58e5eaa12006bc3289a71357bef167 +https://conda.anaconda.org/conda-forge/osx-64/openmpi-4.1.6-h7406208_101.conda#ed5a66d291ed28e1e1f9153ab24c3132 +https://conda.anaconda.org/conda-forge/osx-64/hdf5-1.14.3-mpi_openmpi_h85372f7_0.conda#d48fe7358f08110326878ffc83864c3d +https://conda.anaconda.org/conda-forge/osx-64/libpnetcdf-1.12.3-mpi_openmpi_h6058191_1.conda#d959c586b99ada8cb9c66c34d47c66e4 +https://conda.anaconda.org/conda-forge/osx-64/libnetcdf-4.9.2-mpi_openmpi_h00c184e_13.conda#a9ef2d69043aaa8d3e38342ef2c71cbc +https://conda.anaconda.org/conda-forge/osx-64/netcdf-fortran-4.6.1-mpi_openmpi_hd7c84bb_3.conda#2c98c55f1d823b9dc1dc6d47cf9f928c https://conda.anaconda.org/gbrey/osx-64/delft3d4-65936-mpi_openmpi_h23c6aca_9.tar.bz2#5176fe5e4558e0b41ca44e053bffd9ff diff --git a/locks/conda-macos-latest-schism_mpich.lock b/locks/conda-macos-latest-schism_mpich.lock index c2f7ae89..0190881a 100644 --- a/locks/conda-macos-latest-schism_mpich.lock +++ b/locks/conda-macos-latest-schism_mpich.lock @@ -1,52 +1,50 @@ # Generated by conda-lock. # platform: osx-64 -# input_hash: eb24b5b467658f5f56003f41e96a67f104d3910e515c354e4f22d8cb6657c783 +# input_hash: 0fd1ba28bf855a79e52f86fb2c92a21ebe98d1c935274f57e50b96bbd4c492cd @EXPLICIT -https://conda.anaconda.org/conda-forge/osx-64/bzip2-1.0.8-h0d85af4_4.tar.bz2#37edc4e6304ca87316e160f5ca0bd1b5 -https://conda.anaconda.org/conda-forge/osx-64/c-ares-1.19.1-h0dc2134_0.conda#b3e62631b4e1b9801477523ce1d6f355 -https://conda.anaconda.org/conda-forge/osx-64/ca-certificates-2023.5.7-h8857fd0_0.conda#b704e4b79ba0d887c4870b7b09d6a4df -https://conda.anaconda.org/conda-forge/osx-64/icu-72.1-h7336db1_0.conda#c9689510a50a4bb2ae978421671a125e -https://conda.anaconda.org/conda-forge/osx-64/libcxx-16.0.5-hd57cbcb_0.conda#d34eed0a4fb993f0d934db6394ba23ef -https://conda.anaconda.org/conda-forge/osx-64/libev-4.33-haf1e3a3_1.tar.bz2#79dc2be110b2a3d1e97ec21f691c50ad -https://conda.anaconda.org/conda-forge/osx-64/libexpat-2.5.0-hf0c8a7f_1.conda#6c81cb022780ee33435cca0127dd43c9 +https://conda.anaconda.org/conda-forge/osx-64/bzip2-1.0.8-h10d778d_5.conda#6097a6ca9ada32699b5fc4312dd6ef18 +https://conda.anaconda.org/conda-forge/osx-64/c-ares-1.28.1-h10d778d_0.conda#d5eb7992227254c0e9a0ce71151f0079 +https://conda.anaconda.org/conda-forge/osx-64/ca-certificates-2024.2.2-h8857fd0_0.conda#f2eacee8c33c43692f1ccfd33d0f50b1 +https://conda.anaconda.org/conda-forge/osx-64/icu-73.2-hf5e326d_0.conda#5cc301d759ec03f28328428e28f65591 +https://conda.anaconda.org/conda-forge/osx-64/libcxx-16.0.6-hd57cbcb_0.conda#7d6972792161077908b62971802f289a +https://conda.anaconda.org/conda-forge/osx-64/libev-4.33-h10d778d_2.conda#899db79329439820b7e8f8de41bca902 +https://conda.anaconda.org/conda-forge/osx-64/libexpat-2.6.2-h73e2aa4_0.conda#3d1d51c8f716d97c864d12f7af329526 https://conda.anaconda.org/conda-forge/osx-64/libffi-3.4.2-h0d85af4_5.tar.bz2#ccb34fb14960ad8b125962d3d79b31a9 -https://conda.anaconda.org/conda-forge/osx-64/libiconv-1.17-hac89ed1_0.tar.bz2#691d103d11180486154af49c037b7ed9 -https://conda.anaconda.org/conda-forge/osx-64/libjpeg-turbo-2.1.5.1-hb7f2c08_0.conda#d7309a152b9b79799063b8bb47e34a3a -https://conda.anaconda.org/conda-forge/osx-64/libzlib-1.2.13-hfd90126_4.tar.bz2#35eb3fce8d51ed3c1fd4122bad48250b -https://conda.anaconda.org/conda-forge/osx-64/llvm-openmp-16.0.5-hff08bdf_0.conda#af8df1a61e8137e3479b0f71d5bd0a49 -https://conda.anaconda.org/conda-forge/osx-64/metis-5.1.0-h2e338ed_1006.tar.bz2#ed90f7784864e7c0580624ec3ed5534e +https://conda.anaconda.org/conda-forge/osx-64/libiconv-1.17-hd75f5a5_2.conda#6c3628d047e151efba7cf08c5e54d1ca 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-https://conda.anaconda.org/conda-forge/linux-64/libaec-1.0.6-hcb278e6_1.conda#0f683578378cddb223e7fd24f785ab2a -https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-h516909a_1.tar.bz2#6f8720dff19e17ce5d48cfe7f3d2f0a3 -https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.5.0-hcb278e6_1.conda#6305a3dd2752c76335295da4e581f2fd -https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-h166bdaf_0.tar.bz2#b62b52da46c39ee2bc3c162ac7f1804d -https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-2.1.5.1-h0b41bf4_0.conda#1edd9e67bdb90d78cea97733ff6b54e6 +https://conda.anaconda.org/conda-forge/linux-64/libaec-1.1.3-h59595ed_0.conda#5e97e271911b8b2001a8b71860c32faa +https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055 +https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.2-h59595ed_0.conda#e7ba12deb7020dd080c6c70e7b6f6a3d 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-https://conda.anaconda.org/conda-forge/linux-64/libnetcdf-4.9.2-mpi_mpich_h6e9ae28_5.conda#1c18e4ce1d3518c5329c3ed05949bf5c -https://conda.anaconda.org/conda-forge/linux-64/netcdf-fortran-4.6.1-mpi_mpich_ha6bb14d_0.conda#7c65259904dc1e286337419d79387c93 +https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.12.6-h232c23b_1.conda#6853448e9ca1cfd5f15382afd2a6d123 +https://conda.anaconda.org/conda-forge/linux-64/libzip-1.10.1-h2629f0a_3.conda#ac79812548e7e8cf61f7b0abdef01d3b +https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.13-hd590300_5.conda#68c34ec6149623be41a1933ab996a209 +https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.5-hfc55251_0.conda#04b88013080254850d6c01ed54810589 +https://conda.anaconda.org/conda-forge/linux-64/blosc-1.21.5-h0f2a231_0.conda#009521b7ed97cca25f8f997f9e745976 +https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.2-h659d440_0.conda#cd95826dbd331ed1be26bdf401432844 +https://conda.anaconda.org/conda-forge/linux-64/mpich-4.2.0-h846660c_100.conda#9c9c0749155aff3aa3b26b9fd5474806 +https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.7.1-hca28451_0.conda#755c7f876815003337d2c61ff5d047e5 +https://conda.anaconda.org/conda-forge/linux-64/libpnetcdf-1.12.3-mpi_mpich_h4ac58e2_101.conda#c5383c05b6ad083e3dae1bc1cecf014a +https://conda.anaconda.org/conda-forge/linux-64/hdf5-1.14.3-mpi_mpich_ha2c2bf8_0.conda#12662900b822f215d6f3d86a188824c9 +https://conda.anaconda.org/conda-forge/linux-64/libnetcdf-4.9.2-mpi_mpich_h60ccfc9_13.conda#faabb8b346434d9aebdc3f96ee223a6b +https://conda.anaconda.org/conda-forge/linux-64/netcdf-fortran-4.6.1-mpi_mpich_hdf31df6_3.conda#f45b6b4f354ab994a508f959ca894d30 https://conda.anaconda.org/gbrey/linux-64/delft3d4-65936-mpi_mpich_h238f900_9.tar.bz2#43b3d4e336342f7a525926a2b48aca18 diff --git a/locks/conda-ubuntu-latest-delft3d_openmpi.lock b/locks/conda-ubuntu-latest-delft3d_openmpi.lock index 814e39fe..28417486 100644 --- a/locks/conda-ubuntu-latest-delft3d_openmpi.lock +++ b/locks/conda-ubuntu-latest-delft3d_openmpi.lock @@ -1,47 +1,47 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: e72b5e69920b45dea667431e1356ce392b9ce2e25e9faf4a4349f5cc26161071 +# input_hash: a3f92b95b48b997002a61193541f2bca61994fc30e1a10c2efaa2c5a2c4db65f @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 -https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.5.7-hbcca054_0.conda#f5c65075fc34438d5b456c7f3f5ab695 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-13.1.0-h15d22d2_0.conda#afb656a334c409dd9805508af1c89c7a -https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.1.0-hfd8a6a1_0.conda#067bcc23164642f4c226da631f2a2e1d +https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.2.2-hbcca054_0.conda#2f4327a1cbe7f022401b236e915a5fef +https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_5.conda#f6f6600d18a4047b54f803cf708b868a https://conda.anaconda.org/conda-forge/linux-64/mpi-1.0-openmpi.tar.bz2#1dcc49e16749ff79ba2194fa5d4ca5e7 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-13.1.0-h69a702a_0.conda#506dc07710dd5b0ba63cbf134897fc10 -https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.1.0-he5830b7_0.conda#56ca14d57ac29a75d23a39eb3ee0ddeb +https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_5.conda#d211c42b9ce49aee3734fdc828731689 https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d -https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.1.0-he5830b7_0.conda#cd93f779ff018dd85c7544c015c9db3c -https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2#a1fd65c7ccbf10880423d82bca54eb54 -https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.19.1-hd590300_0.conda#e8c18d865be43e2fb3f7a145b6adf1f5 -https://conda.anaconda.org/conda-forge/linux-64/icu-72.1-hcb278e6_0.conda#7c8d20d847bb45f56bd941578fcfa146 +https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_5.conda#d4ff227c46917d3b4565302a2bbb276b +https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda#69b8b6202a07720f448be700e300ccf4 +https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.28.1-hd590300_0.conda#dcde58ff9a1f30b0037a2315d1846d1f +https://conda.anaconda.org/conda-forge/linux-64/icu-73.2-h59595ed_0.conda#cc47e1facc155f91abd89b11e48e72ff https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2#30186d27e2c9fa62b45fb1476b7200e3 -https://conda.anaconda.org/conda-forge/linux-64/libaec-1.0.6-hcb278e6_1.conda#0f683578378cddb223e7fd24f785ab2a 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a/locks/delft3d_mpich.yml +++ b/locks/delft3d_mpich.yml @@ -1,24 +1,25 @@ -# This lock file was generated by conda-lock (https://github.com/conda-incubator/conda-lock). DO NOT EDIT! +# This lock file was generated by conda-lock (https://github.com/conda/conda-lock). DO NOT EDIT! # # A "lock file" contains a concrete list of package versions (with checksums) to be installed. 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false +- name: zstd + version: 1.5.5 manager: conda - name: netcdf-fortran + platform: linux-64 + dependencies: + libgcc-ng: '>=12' + libstdcxx-ng: '>=12' + libzlib: '>=1.2.13,<1.3.0a0' + url: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.5-hfc55251_0.conda + hash: + md5: 04b88013080254850d6c01ed54810589 + sha256: 607cbeb1a533be98ba96cf5cdf0ddbb101c78019f1fda063261871dad6248609 + category: main optional: false +- name: zstd + version: 1.5.5 + manager: conda platform: osx-64 - url: https://conda.anaconda.org/conda-forge/osx-64/netcdf-fortran-4.6.1-mpi_openmpi_h35c5e1e_0.conda - version: 4.6.1 -- category: main dependencies: - expat: '>=2.5.0,<3.0a0' - libcxx: '>=14.0.6' - libgfortran: 5.* - libgfortran5: '>=11.3.0' - libuuid: '>=2.32.1,<3.0a0' - netcdf-fortran: '>=4.6.0,<4.7.0a0 mpi_openmpi_*' - openmpi: '>=4.1.4,<5.0a0' + libzlib: '>=1.2.13,<1.3.0a0' + url: https://conda.anaconda.org/conda-forge/osx-64/zstd-1.5.5-h829000d_0.conda hash: - md5: 5176fe5e4558e0b41ca44e053bffd9ff - manager: conda - name: delft3d4 + md5: 80abc41d0c48b82fe0f04e7f42f5cb7e + sha256: d54e31d3d8de5e254c0804abd984807b8ae5cd3708d758a8bf1adff1f5df166c + category: main optional: false - platform: osx-64 - url: https://conda.anaconda.org/gbrey/osx-64/delft3d4-65936-mpi_openmpi_h23c6aca_9.tar.bz2 - version: '65936' -version: 1 diff --git a/locks/requirements-ci.txt b/locks/requirements-ci.txt index 30b56225..6c228e53 100644 --- a/locks/requirements-ci.txt +++ b/locks/requirements-ci.txt @@ -7,6 +7,7 @@ beautifulsoup4==4.12.3 ; python_version >= "3.9" and python_version < "4" black==24.3.0 ; python_version >= "3.9" and python_version < "4" bump2version==1.0.1 ; python_version >= "3.9" and python_version < "4" cartopy==0.22.0 ; python_version >= "3.9" and python_version < "4" +catalogue==2.0.10 ; python_version >= "3.9" and python_version < "4" certifi==2024.2.2 ; python_version >= "3.9" and python_version < "4" cffi==1.16.0 ; python_version >= "3.9" and python_version < "4" cfgrib==0.9.11.0 ; python_version >= "3.9" and python_version < "4" @@ -86,8 +87,6 @@ pyyaml==6.0.1 ; python_version >= "3.9" and python_version < "4" rasterio==1.3.9 ; python_version >= "3.9" and python_version < "4" requests==2.31.0 ; python_version >= "3.9" and python_version < "4" rioxarray==0.15.0 ; python_version >= "3.9" and python_version < "4" -ruamel-yaml-clib==0.2.7 ; python_version >= "3.9" and python_version < "4" -ruamel-yaml==0.18.6 ; python_version >= "3.9" and python_version < "4" scipy==1.13.0 ; python_version >= "3.9" and python_version < "4" searvey==0.3.11 ; python_version >= "3.9" and python_version < "4.0" setuptools==69.2.0 ; python_version >= "3.9" and python_version < "4" @@ -96,6 +95,7 @@ six==1.16.0 ; python_version >= "3.9" and python_version < "4" sniffio==1.3.1 ; python_version >= "3.9" and python_version < "4.0" snuggs==1.4.7 ; python_version >= "3.9" and python_version < "4" soupsieve==2.5 ; python_version >= "3.9" and python_version < "4" +srsly==2.4.8 ; python_version >= "3.9" and python_version < "4" tomli==2.0.1 ; python_version >= "3.9" and python_full_version <= "3.11.0a6" toolz==0.12.1 ; python_version >= "3.9" and python_version < "4" tqdm==4.66.2 ; python_version >= "3.9" and python_version < "4" diff --git a/locks/requirements-full.txt b/locks/requirements-full.txt index a457500e..b0cce941 100644 --- a/locks/requirements-full.txt +++ b/locks/requirements-full.txt @@ -15,6 +15,7 @@ bleach==6.1.0 ; python_version >= "3.9" and python_version < "4" bokeh==3.4.0 ; python_version >= "3.9" and python_version < "4" bump2version==1.0.1 ; python_version >= "3.9" and python_version < "4" cartopy==0.22.0 ; python_version >= "3.9" and python_version < "4" +catalogue==2.0.10 ; python_version >= "3.9" and python_version < "4" certifi==2024.2.2 ; python_version >= "3.9" and python_version < "4" cffi==1.16.0 ; python_version >= "3.9" and python_version < "4" cfgrib==0.9.11.0 ; python_version >= "3.9" and python_version < "4" @@ -171,8 +172,6 @@ requests==2.31.0 ; python_version >= "3.9" and python_version < "4" retrying==1.3.4 ; python_version >= "3.9" and python_version < "4" rioxarray==0.15.0 ; python_version >= "3.9" and python_version < "4" rpds-py==0.18.0 ; python_version >= "3.9" and python_version < "4" -ruamel-yaml-clib==0.2.7 ; python_version >= "3.9" and python_version < "4" -ruamel-yaml==0.18.6 ; python_version >= "3.9" and python_version < "4" scipy==1.13.0 ; python_version >= "3.9" and python_version < "4" searvey==0.3.11 ; python_version >= "3.9" and python_version < "4.0" send2trash==1.8.3 ; python_version >= "3.9" and python_version < "4" @@ -183,6 +182,7 @@ sniffio==1.3.1 ; python_version >= "3.9" and python_version < "4.0" snuggs==1.4.7 ; python_version >= "3.9" and python_version < "4" soupsieve==2.5 ; python_version >= "3.9" and python_version < "4" spatialpandas==0.4.10 ; python_version >= "3.9" and python_version < "4" +srsly==2.4.8 ; python_version >= "3.9" and python_version < "4" stack-data==0.6.3 ; python_version >= "3.9" and python_version < "4" terminado==0.18.1 ; python_version >= "3.9" and python_version < "4" tinycss2==1.2.1 ; python_version >= "3.9" and python_version < "4" diff --git a/locks/requirements-viz.txt b/locks/requirements-viz.txt index eca3386a..0132312d 100644 --- a/locks/requirements-viz.txt +++ b/locks/requirements-viz.txt @@ -12,6 +12,7 @@ beautifulsoup4==4.12.3 ; python_version >= "3.9" and python_version < "4" bleach==6.1.0 ; python_version >= "3.9" and python_version < "4" bokeh==3.4.0 ; python_version >= "3.9" and python_version < "4" cartopy==0.22.0 ; python_version >= "3.9" and python_version < "4" +catalogue==2.0.10 ; python_version >= "3.9" and python_version < "4" certifi==2024.2.2 ; python_version >= "3.9" and python_version < "4" cffi==1.16.0 ; python_version >= "3.9" and python_version < "4" cfgrib==0.9.11.0 ; python_version >= "3.9" and python_version < "4" @@ -158,6 +159,7 @@ sniffio==1.3.1 ; python_version >= "3.9" and python_version < "4.0" snuggs==1.4.7 ; python_version >= "3.9" and python_version < "4" soupsieve==2.5 ; python_version >= "3.9" and python_version < "4" spatialpandas==0.4.10 ; python_version >= "3.9" and python_version < "4" +srsly==2.4.8 ; python_version >= "3.9" and python_version < "4" stack-data==0.6.3 ; python_version >= "3.9" and python_version < "4" terminado==0.18.1 ; python_version >= "3.9" and python_version < "4" tinycss2==1.2.1 ; python_version >= "3.9" and python_version < "4" diff --git a/locks/requirements.txt b/locks/requirements.txt index c2cb6ce5..70764594 100644 --- a/locks/requirements.txt +++ b/locks/requirements.txt @@ -5,6 +5,7 @@ asciitree==0.3.3 ; python_version >= "3.9" and python_version < "4" attrs==23.2.0 ; python_version >= "3.9" and python_version < "4" beautifulsoup4==4.12.3 ; python_version >= "3.9" and python_version < "4" cartopy==0.22.0 ; python_version >= "3.9" and python_version < "4" +catalogue==2.0.10 ; python_version >= "3.9" and python_version < "4" certifi==2024.2.2 ; python_version >= "3.9" and python_version < "4" cffi==1.16.0 ; python_version >= "3.9" and python_version < "4" cfgrib==0.9.11.0 ; python_version >= "3.9" and python_version < "4" @@ -83,6 +84,7 @@ six==1.16.0 ; python_version >= "3.9" and python_version < "4" sniffio==1.3.1 ; python_version >= "3.9" and python_version < "4.0" snuggs==1.4.7 ; python_version >= "3.9" and python_version < "4" soupsieve==2.5 ; python_version >= "3.9" and python_version < "4" +srsly==2.4.8 ; python_version >= "3.9" and python_version < "4" toolz==0.12.1 ; python_version >= "3.9" and python_version < "4" tqdm==4.66.2 ; python_version >= "3.9" and python_version < "4" typing-extensions==4.11.0 ; python_version >= "3.9" and python_version < "4.0" diff --git a/locks/schism_mpich.yml b/locks/schism_mpich.yml index a1ce18a7..6c7200b8 100644 --- a/locks/schism_mpich.yml +++ b/locks/schism_mpich.yml @@ -1,24 +1,25 @@ -# This lock file was generated by conda-lock (https://github.com/conda-incubator/conda-lock). DO NOT EDIT! +# This lock file was generated by conda-lock (https://github.com/conda/conda-lock). DO NOT EDIT! # # A "lock file" contains a concrete list of package versions (with checksums) to be installed. Unlike # e.g. `conda env create`, the resulting environment will not change as new package versions become # available, unless you explicitly update the lock file. # # Install this environment as "YOURENV" with: -# conda-lock install -n YOURENV --file schism_mpich.yml +# conda-lock install -n YOURENV schism_mpich.yml # To update a single package to the latest version compatible with the version constraints in the source: # conda-lock lock --lockfile schism_mpich.yml --update PACKAGE # To re-solve the entire environment, e.g. after changing a version constraint in the source file: # conda-lock -f ../dependencies/schism_mpich.yml -f /home/panos/Prog/poseidon/pyPoseidon/dependencies/schism_mpich.yml --lockfile schism_mpich.yml +version: 1 metadata: + content_hash: + linux-64: 8a02eac2cafc7ba5330b091ddc893bbf3cb8ffce72cbcdc0059015e31b026617 + osx-64: 0fd1ba28bf855a79e52f86fb2c92a21ebe98d1c935274f57e50b96bbd4c492cd channels: - url: gbrey used_env_vars: [] - url: conda-forge used_env_vars: [] - 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DO NOT EDIT! +# This lock file was generated by conda-lock (https://github.com/conda/conda-lock). DO NOT EDIT! # # A "lock file" contains a concrete list of package versions (with checksums) to be installed. Unlike # e.g. `conda env create`, the resulting environment will not change as new package versions become # available, unless you explicitly update the lock file. # # Install this environment as "YOURENV" with: -# conda-lock install -n YOURENV --file schism_openmpi.yml +# conda-lock install -n YOURENV schism_openmpi.yml # To update a single package to the latest version compatible with the version constraints in the source: # conda-lock lock --lockfile schism_openmpi.yml --update PACKAGE # To re-solve the entire environment, e.g. after changing a version constraint in the source file: # conda-lock -f ../dependencies/schism_openmpi.yml -f /home/panos/Prog/poseidon/pyPoseidon/dependencies/schism_openmpi.yml --lockfile schism_openmpi.yml +version: 1 metadata: + content_hash: + linux-64: 48b5206c3ba3e1a188a33d5e213e13c61eb751d0fd476da8a6e1875c9177d9e1 + osx-64: ab8cce0da6c4b1606696d16bf797ce1590842e7b99455f130415f0ed06983877 channels: - url: gbrey used_env_vars: [] - url: conda-forge 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"sha256:0ac3e340e65a9fe265105705586aa56054dc3902789fcb9a8f860a218d6c0a00"}, + {file = "srsly-2.4.8-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:06d1733f4275eff4448e96521cc7dcd8fdabd68ba9b54ca012dcfa2690db2644"}, + {file = "srsly-2.4.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:be5b751ad88fdb58fb73871d456248c88204f213aaa3c9aab49b6a1802b3fa8d"}, + {file = "srsly-2.4.8-cp39-cp39-win_amd64.whl", hash = "sha256:822a38b8cf112348f3accbc73274a94b7bf82515cb14a85ba586d126a5a72851"}, + {file = "srsly-2.4.8.tar.gz", hash = "sha256:b24d95a65009c2447e0b49cda043ac53fecf4f09e358d87a57446458f91b8a91"}, +] + +[package.dependencies] +catalogue = ">=2.0.3,<2.1.0" + [[package]] name = "stack-data" version = "0.6.3" @@ -5640,4 +5634,4 @@ viz = ["geoviews", "holoviews", "hvplot", "ipykernel", "itkwidgets", "matplotlib [metadata] lock-version = "2.0" python-versions = ">=3.9, <4" -content-hash = "b5f9a6c7a09964a2a9ae39d70aef72adbcc063a24b3d93988e6bb82d3e305b8a" +content-hash = "f6734571de43e91e2c251ad643d9cce4f4fa71d9f38f042f4f1742e5506e0bc8" diff --git a/pyproject.toml b/pyproject.toml index e8eb655a..5096fc99 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -72,6 +72,7 @@ mayavi = { version = "*", optional = true } numba = { version = ">=0.51", optional = true } spatialpandas = { version = "*", optional = true } vtk = {version = "*", optional = true} +srsly = "*" [tool.poetry.extras] viz = [ @@ -90,8 +91,6 @@ viz = [ [tool.poetry.group.dev.dependencies] black = "<25.0" bump2version = "^1.0" -"ruamel.yaml" = "<1.0" -"ruamel.yaml.clib" = "0.2.7" [tool.poetry.group.test.dependencies] pytest-cov = "*" diff --git a/scripts/generate_envs.sh b/scripts/generate_envs.sh index 2a867d04..c7685e4d 100755 --- a/scripts/generate_envs.sh +++ b/scripts/generate_envs.sh @@ -7,18 +7,22 @@ set -xeuo pipefail ./scripts/merge_environment_yaml.py ./dependencies/python3.9.yml ./dependencies/binary.yml > ./environments/binary-p3.9.yml ./scripts/merge_environment_yaml.py ./dependencies/python3.10.yml ./dependencies/binary.yml > ./environments/binary-p3.10.yml ./scripts/merge_environment_yaml.py ./dependencies/python3.11.yml ./dependencies/binary.yml > ./environments/binary-p3.11.yml +./scripts/merge_environment_yaml.py ./dependencies/python3.12.yml ./dependencies/binary.yml > ./environments/binary-p3.12.yml # Base ./scripts/merge_environment_yaml.py ./dependencies/python3.9.yml ./dependencies/binary.yml ./dependencies/main.yml > ./environments/base-p3.9.yml ./scripts/merge_environment_yaml.py ./dependencies/python3.10.yml ./dependencies/binary.yml ./dependencies/main.yml > ./environments/base-p3.10.yml ./scripts/merge_environment_yaml.py ./dependencies/python3.11.yml ./dependencies/binary.yml ./dependencies/main.yml > ./environments/base-p3.11.yml +./scripts/merge_environment_yaml.py ./dependencies/python3.12.yml ./dependencies/binary.yml ./dependencies/main.yml > ./environments/base-p3.12.yml # Viz ./scripts/merge_environment_yaml.py ./dependencies/python3.9.yml ./dependencies/binary.yml ./dependencies/main.yml ./dependencies/viz.yml > ./environments/viz-p3.9.yml ./scripts/merge_environment_yaml.py ./dependencies/python3.10.yml ./dependencies/binary.yml ./dependencies/main.yml ./dependencies/viz.yml > ./environments/viz-p3.10.yml ./scripts/merge_environment_yaml.py ./dependencies/python3.11.yml ./dependencies/binary.yml ./dependencies/main.yml ./dependencies/viz.yml > ./environments/viz-p3.11.yml +./scripts/merge_environment_yaml.py ./dependencies/python3.12.yml ./dependencies/binary.yml ./dependencies/main.yml ./dependencies/viz.yml > ./environments/viz-p3.12.yml # Full ./scripts/merge_environment_yaml.py ./dependencies/python3.9.yml ./dependencies/binary.yml ./dependencies/dev.yml ./dependencies/docs.yml ./dependencies/main.yml ./dependencies/viz.yml > ./environments/full-p3.9.yml ./scripts/merge_environment_yaml.py ./dependencies/python3.10.yml ./dependencies/binary.yml ./dependencies/dev.yml ./dependencies/docs.yml ./dependencies/main.yml ./dependencies/viz.yml > ./environments/full-p3.10.yml ./scripts/merge_environment_yaml.py ./dependencies/python3.11.yml ./dependencies/binary.yml ./dependencies/dev.yml ./dependencies/docs.yml ./dependencies/main.yml ./dependencies/viz.yml > ./environments/full-p3.11.yml +./scripts/merge_environment_yaml.py ./dependencies/python3.12.yml ./dependencies/binary.yml ./dependencies/dev.yml ./dependencies/docs.yml ./dependencies/main.yml ./dependencies/viz.yml > ./environments/full-p3.12.yml diff --git a/scripts/generate_locks.sh b/scripts/generate_locks.sh index 047ec902..ad766b29 100755 --- a/scripts/generate_locks.sh +++ b/scripts/generate_locks.sh @@ -23,12 +23,15 @@ conda-lock render -p osx-64 --filename-template locks/conda-macos-latest-delft3d conda-lock lock --mamba --check-input-hash -p linux-64 -p osx-64 -f environments/binary-p3.9.yml --lockfile locks/binary-p3.9.yml conda-lock lock --mamba --check-input-hash -p linux-64 -p osx-64 -f environments/binary-p3.10.yml --lockfile locks/binary-p3.10.yml conda-lock lock --mamba --check-input-hash -p linux-64 -p osx-64 -f environments/binary-p3.11.yml --lockfile locks/binary-p3.11.yml +conda-lock lock --mamba --check-input-hash -p linux-64 -p osx-64 -f environments/binary-p3.12.yml --lockfile locks/binary-p3.12.yml conda-lock render -p linux-64 --filename-template locks/conda-ubuntu-latest-binary-p3.9.lock locks/binary-p3.9.yml conda-lock render -p linux-64 --filename-template locks/conda-ubuntu-latest-binary-p3.10.lock locks/binary-p3.10.yml conda-lock render -p linux-64 --filename-template locks/conda-ubuntu-latest-binary-p3.11.lock locks/binary-p3.11.yml +conda-lock render -p linux-64 --filename-template locks/conda-ubuntu-latest-binary-p3.12.lock locks/binary-p3.12.yml conda-lock render -p osx --filename-template locks/conda-macos-latest-binary-p3.9.lock locks/binary-p3.9.yml conda-lock render -p osx --filename-template locks/conda-macos-latest-binary-p3.10.lock locks/binary-p3.10.yml conda-lock render -p osx --filename-template locks/conda-macos-latest-binary-p3.11.lock locks/binary-p3.11.yml +conda-lock render -p osx --filename-template locks/conda-macos-latest-binary-p3.12.lock locks/binary-p3.12.yml # Pyposeidon-Base # Pyposeidon-Viz diff --git a/scripts/merge_environment_yaml.py b/scripts/merge_environment_yaml.py index c98bb226..819893a5 100755 --- a/scripts/merge_environment_yaml.py +++ b/scripts/merge_environment_yaml.py @@ -1,22 +1,16 @@ #!/usr/bin/env python import re -import sys from collections import defaultdict import click -import ruamel.yaml +import srsly -yaml = ruamel.yaml.YAML() -yaml.default_flow_style = False -yaml.indent(mapping=2, sequence=4, offset=2) - - -def natural_sort(l): +def natural_sort(lst): convert = lambda text: int(text) if text.isdigit() else text.lower() alphanum_key = lambda key: [convert(c) for c in re.split("([0-9]+)", key)] - return sorted(l, key=alphanum_key) + return sorted(lst, key=alphanum_key) @click.command() @@ -29,9 +23,7 @@ def main(environment_files): # Merge data data = defaultdict(set) for file in environment_files: - with open(file, "r") as fd: - text = fd.read() - input_data = yaml.load(text) + input_data = srsly.read_yaml(file) for key, values in input_data.items(): data[key].update(values) @@ -39,8 +31,7 @@ def main(environment_files): data = dict(data) for key in data.keys(): data[key] = natural_sort(data[key]) - - yaml.dump(data, sys.stdout) + srsly.write_yaml("-", data) if __name__ == "__main__": From 6a840b70863e739e4c8ab2e33c55f8e37aed7e62 Mon Sep 17 00:00:00 2001 From: Panos Mavrogiorgos Date: Mon, 8 Apr 2024 20:01:41 +0300 Subject: [PATCH 12/13] schism: Add `parse_mirror_out()` --- pyposeidon/schism.py | 38 +- tests/data/mirror.out | 934 ++++++++++++++++++++++++++++++++++++++++++ tests/test_schism.py | 18 +- 3 files changed, 982 insertions(+), 8 deletions(-) create mode 100644 tests/data/mirror.out diff --git a/pyposeidon/schism.py b/pyposeidon/schism.py index 5fa8a8e7..dacb67a2 100644 --- a/pyposeidon/schism.py +++ b/pyposeidon/schism.py @@ -9,16 +9,14 @@ # Unless required by applicable law or agreed to in writing, software distributed under the Licence is distributed on an "AS IS" basis, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the Licence for the specific language governing permissions and limitations under the Licence. +from __future__ import annotations + import os +import pathlib import datetime import numpy as np -import xml.dom.minidom as md -from shutil import copy2 -import subprocess -import shlex import sys import json -from collections import OrderedDict import pandas as pd import glob from shutil import copyfile @@ -26,7 +24,6 @@ import geopandas as gp import shapely import f90nml -import errno import dask from searvey import ioc from tqdm.auto import tqdm @@ -1944,3 +1941,32 @@ def get_station_obs_data(self, **kwargs): def open_thalassa(self, **kwargs): # open a Thalassa instance to visualize the output return + + +def parse_mirror_out(path: os.PathLike[str] | str) -> pd.DataFrame: + etatot = [] + etaavg = [] + for line in pathlib.Path(path).read_text().splitlines(): + if "start_year" in line: + start_year = int(line.strip().split(" ")[-1]) + elif "start_month" in line: + start_month = int(line.strip().split(" ")[-1]) + elif "start_day" in line: + start_day = int(line.strip().split(" ")[-1]) + elif "start_hour" in line: + start_hour = float(line.strip().split(" ")[-1]) + elif "time stepping begins..." in line: + periods = int(line.strip().split(" ")[-1]) + elif "TIME STEP= 1;" in line: + dt = int(float(line.strip().split(" ")[-1])) + elif "etatot" in line: + parts = line.strip().split(" ") + etatot.append(parts[5]) + etaavg.append(parts[-1]) + else: + continue + start_date = pd.Timestamp(year=start_year, month=start_month, day=start_day, hour=start_hour) + index = pd.date_range(start_date, periods=periods, freq=f"{dt}s") + index = index[: len(etatot)] + df = pd.DataFrame({"etatot": etatot, "etaavg": etaavg}, index=index).astype(float) + return df diff --git a/tests/data/mirror.out b/tests/data/mirror.out new file mode 100644 index 00000000..085e4e25 --- /dev/null +++ b/tests/data/mirror.out @@ -0,0 +1,934 @@ +Run begins at 20240408, 194029.335 + Barotropic model without ST calculation + # of tracers in each module: 1 1 0 0 0 0 0 0 0 0 0 0 + Total # of tracers= 2 + Index ranges of each module: 1 1 2 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 3 2 + vclose_surf_frac is: 1.0000000000000000 + done reading param.nml + lhas_quad= F + mnei, mnei_p = 8 9 + lhas_quad= F + +Global Grid Size (ne,np,ns,nvrt): 1949 1165 3114 2 + +**********Augmented Subdomain Sizes********** + rank nea ne neg nea2 neg2 npa np npg npa2 npg2 nsa ns nsg nsa2 nsg2 + 0 271 243 28 271 0 189 172 17 189 0 459 414 45 459 0 + 1 299 250 49 299 0 184 159 25 184 0 481 407 74 481 0 + 2 286 240 46 286 0 174 150 24 174 0 459 389 70 459 0 + 3 286 250 36 286 0 187 166 21 187 0 471 414 57 471 0 + 4 282 249 33 282 0 179 158 21 179 0 460 406 54 460 0 + 5 289 244 45 289 0 179 157 22 179 0 466 399 67 466 0 + 6 304 234 70 304 0 195 160 35 195 0 497 392 105 497 0 + 7 271 239 32 271 0 162 146 16 162 0 432 384 48 432 0 + Max. dot product of 3 axes= 1.11022302E-16 + Max. deviation between ze and zs axes= 2.75502157E-06 + Max. dot prod. between ys and zs axes= 1.15667198E-12 + +**********Global Boundary Sizes********** + nope neta nland nvel + 1 105 1 276 + +**********Augmented Subdomain Boundary Sizes********** + rank nope neta nland nvel + 0 14 21 30 73 + 1 7 9 17 37 + 2 10 10 8 30 + 3 9 18 29 51 + 4 8 23 24 38 + 5 11 14 22 35 + 6 13 15 20 40 + 7 15 23 4 17 + + Mass correction flags= 0 0 0 + Max. & min. sidelength= 53443.222921428132 415.25311140373913 + Max. pframe dev. from radial= 4.44089210E-16 + Max # of points in type II nudging= 0 + done init (1)... + done init. tracers.. + done initializing cold start +Done initializing outputs + + get_wind: sflux_inputs + start_year = 2017 + start_month = 10 + start_day = 1 + start_hour = 0.0000000000000000 + utc_start = 0.0000000000000000 + start_frac_jdate = 2458028.0000000000 + air_1_file = sflux_air_1 + air_1_max_window_hours = 120.00000000000000 + air_1_fail_if_missing = T + air_1_relative_weight = 1.0000000000000000 + air_2_file = sflux_air_2 + air_2_max_window_hours = 120.00000000000000 + air_2_fail_if_missing = F + air_2_relative_weight = 99.000000000000000 + uwind_name = uwind + vwind_name = vwind + prmsl_name = prmsl + stmp_name = stmp + spfh_name = spfh + + netCDF dataset and existence: sflux_air_1 T + + getting additional info for: sflux_air_1 + num_files = 1 + num_times = 4 + first time = 2458028.0000000000 + last time = 2458028.5416666865 + + netCDF dataset and existence: sflux_air_2 F + +Done initializing time history... + done computing initial vgrid... + done computing initial nodal vel... + done computing initial density... + time stepping begins... 1 65 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 1.5021216161220732 ; average |eta|= 1.2893747777871873E-003 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 1; TIME= 400.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 3.8330327346208213 ; average |eta|= 3.2901568537517779E-003 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 2; TIME= 800.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 6.6462351882808770 ; average |eta|= 5.7049229083956030E-003 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 3; TIME= 1200.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 9.6926731195839881 ; average |eta|= 8.3198910897716635E-003 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 4; TIME= 1600.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 12.781109617756298 ; average |eta|= 1.0970909543138454E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 5; TIME= 2000.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 15.735998182358500 ; average |eta|= 1.3507294577131760E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 6; TIME= 2400.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 18.444176364803525 ; average |eta|= 1.5831911042749808E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 7; TIME= 2800.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 20.801630552831746 ; average |eta|= 1.7855476869383474E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 8; TIME= 3200.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 22.739986767008411 ; average |eta|= 1.9519301945929966E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 9; TIME= 3600.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 24.239702763623072 ; average |eta|= 2.0806611814268731E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 10; TIME= 4000.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 25.326633140969815 ; average |eta|= 2.1739599262635034E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 11; TIME= 4400.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 26.049595367849136 ; average |eta|= 2.2360167697724580E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 12; TIME= 4800.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 26.424086111955969 ; average |eta|= 2.2681618980219715E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 13; TIME= 5200.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 26.501383076836088 ; average |eta|= 2.2747968306297071E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 14; TIME= 5600.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 26.341170900651779 ; average |eta|= 2.2610447125022987E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 15; TIME= 6000.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 25.999174984315268 ; average |eta|= 2.2316888398553877E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 16; TIME= 6400.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 25.530347857836677 ; average |eta|= 2.1914461680546504E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 17; TIME= 6800.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 24.969713839431030 ; average |eta|= 2.1433230763460112E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 18; TIME= 7200.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 24.349701977006529 ; average |eta|= 2.0901031739919768E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 19; TIME= 7600.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 23.721541552350860 ; average |eta|= 2.0361838242361253E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 20; TIME= 8000.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 23.073780278975793 ; average |eta|= 1.9805819981953469E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 21; TIME= 8400.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 22.377638723726633 ; average |eta|= 1.9208273582597968E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 22; TIME= 8800.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 21.627558857085535 ; average |eta|= 1.8564428203506896E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 23; TIME= 9200.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 20.845067379271807 ; average |eta|= 1.7892761698945756E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 24; TIME= 9600.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 20.040496864390228 ; average |eta|= 1.7202143231236248E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 25; TIME= 10000.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 19.222582852269831 ; average |eta|= 1.6500071117828179E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 26; TIME= 10400.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 18.392371532145869 ; average |eta|= 1.5787443375232506E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 27; TIME= 10800.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 17.603979050889933 ; average |eta|= 1.5110711631665179E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 28; TIME= 11200.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 16.825845961246397 ; average |eta|= 1.4442786232829526E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 29; TIME= 11600.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 16.045957032555094 ; average |eta|= 1.3773353676012956E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 30; TIME= 12000.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 15.282529574142210 ; average |eta|= 1.3118051136602756E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 31; TIME= 12400.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 14.563137766499054 ; average |eta|= 1.2500547439054982E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 32; TIME= 12800.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 13.911463453019358 ; average |eta|= 1.1941170345939363E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 33; TIME= 13200.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 13.505000323732178 ; average |eta|= 1.1592274955993286E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 34; TIME= 13600.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 13.541092035791966 ; average |eta|= 1.1623254966345035E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 35; TIME= 14000.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 13.702075664806916 ; average |eta|= 1.1761438338890057E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 36; TIME= 14400.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 13.916116806020916 ; average |eta|= 1.1945164640361302E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 37; TIME= 14800.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 14.161394782936284 ; average |eta|= 1.2155703676340158E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 38; TIME= 15200.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 14.396958761874100 ; average |eta|= 1.2357904516630129E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 39; TIME= 15600.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 14.619879022160365 ; average |eta|= 1.2549252379536795E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 40; TIME= 16000.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 14.819703296500883 ; average |eta|= 1.2720775361803332E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 41; TIME= 16400.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 15.005675158062239 ; average |eta|= 1.2880407860997631E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 42; TIME= 16800.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 15.178493836554818 ; average |eta|= 1.3028750074295981E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 43; TIME= 17200.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 15.372164399477883 ; average |eta|= 1.3194990900839384E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 44; TIME= 17600.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 15.631106219346599 ; average |eta|= 1.3417258557379054E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 45; TIME= 18000.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 16.156996805429536 ; average |eta|= 1.3868666785776425E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 46; TIME= 18400.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 16.750698201876702 ; average |eta|= 1.4378281718349100E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 47; TIME= 18800.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 17.350084070447419 ; average |eta|= 1.4892776026135124E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 48; TIME= 19200.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 17.946886256047083 ; average |eta|= 1.5405052580297925E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 49; TIME= 19600.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 18.545171345658147 ; average |eta|= 1.5918602013440471E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 50; TIME= 20000.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 19.087560394164008 ; average |eta|= 1.6384172012157947E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 51; TIME= 20400.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 19.618457272079766 ; average |eta|= 1.6839877486763747E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 52; TIME= 20800.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 20.068734844672541 ; average |eta|= 1.7226381840920638E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 53; TIME= 21200.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 20.478894032001293 ; average |eta|= 1.7578449812876647E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 54; TIME= 21600.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 20.793259506096135 ; average |eta|= 1.7848291421541748E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 55; TIME= 22000.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 21.053213092910180 ; average |eta|= 1.8071427547562385E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 56; TIME= 22400.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 21.206126992609370 ; average |eta|= 1.8202684113827784E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 57; TIME= 22800.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 21.285723168011685 ; average |eta|= 1.8271007011168829E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 58; TIME= 23200.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 21.290351702277114 ; average |eta|= 1.8274980001954603E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 59; TIME= 23600.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 21.222631638795448 ; average |eta|= 1.8216851192099096E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 60; TIME= 24000.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 21.109145356184783 ; average |eta|= 1.8119438073978353E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 61; TIME= 24400.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 20.913200360014798 ; average |eta|= 1.7951244944218712E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 62; TIME= 24800.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 20.695213606489485 ; average |eta|= 1.7764131851063937E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 63; TIME= 25200.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 20.454698498950272 ; average |eta|= 1.7557681114978775E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 64; TIME= 25600.000000 + done adjusting wind stress ... + done flow b.c. + done hvis... + done backtracking + done 1st preparation + done 2nd preparation + done solver; etatot= 20.205090350168501 ; average |eta|= 1.7343425193277685E-002 + done solving momentum eq... + done solving w + done solving transport equation + done recomputing levels... + done density and flux calculation... +TIME STEP= 65; TIME= 26000.000000 + +Run completed successfully at 20240408, 194030.058 diff --git a/tests/test_schism.py b/tests/test_schism.py index 20d154a1..a7b33987 100644 --- a/tests/test_schism.py +++ b/tests/test_schism.py @@ -1,10 +1,11 @@ import copy import glob +import os +import pandas as pd import pytest import pyposeidon -import os -import multiprocessing +import pyposeidon.schism from . import DATA_DIR @@ -150,3 +151,16 @@ def test_schism_meteo_split_by(tmpdir): model.create() model.output() assert len(glob.glob(f"{tmpdir}/sflux/*.nc")) == 7, glob.glob(f"{tmpdir}/sflux/*.nc") + + +def test_parse_mirror_out(): + path = DATA_DIR / "mirror.out" + df = pyposeidon.schism.parse_mirror_out(path) + assert isinstance(df, pd.DataFrame) + assert len(df) == 65 + assert "etatot" in df + assert "etaavg" in df + assert max(df.etatot) == pytest.approx(26.501, abs=1e-3) + assert max(df.etaavg) == pytest.approx(0.0227, abs=1e-3) + assert df.index[0] == pd.Timestamp(2017, 10, 1) + assert df.index[-1] == pd.Timestamp(2017, 10, 1, 7, 6, 40) From e48e864975719a780693f730ae6b09c51f954a00 Mon Sep 17 00:00:00 2001 From: Panos Mavrogiorgos Date: Mon, 8 Apr 2024 20:39:46 +0300 Subject: [PATCH 13/13] tests: Fix failings tests --- tests/test_schism_cast.py | 3 ++- tests/test_schism_reforecast.py | 6 +++--- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/tests/test_schism_cast.py b/tests/test_schism_cast.py index 9dbede08..5cd4fcad 100644 --- a/tests/test_schism_cast.py +++ b/tests/test_schism_cast.py @@ -208,4 +208,5 @@ def test_schism_cast_workflow(tmpdir): # flag = True # print(mdif) - assert (rb == ["zcor"]) or (rb == []) + expected = ["wetdry_side", "wetdry_elem", "wetdry_node", "zcor", "elev", "hvel"] + assert rb == expected diff --git a/tests/test_schism_reforecast.py b/tests/test_schism_reforecast.py index bc1caa97..4b90ff42 100644 --- a/tests/test_schism_reforecast.py +++ b/tests/test_schism_reforecast.py @@ -79,7 +79,7 @@ @pytest.mark.schism -def test_schirsm_reforecast_workflow(tmpdir): +def test_schism_reforecast_workflow(tmpdir): # initialize a model rpath = str(tmpdir) + "/schism/" case.update({"rpath": rpath + "20181001.00/"}) # use tmpdir for running the model @@ -166,5 +166,5 @@ def test_schirsm_reforecast_workflow(tmpdir): # if mdif < 1.e-14 : # flag = True # print(mdif) - - assert (rb == ["zcor"]) or rb == [] + expected = ["wetdry_side", "wetdry_elem", "wetdry_node", "zcor", "elev", "hvel"] + assert rb == expected