From 1b7d13825e07c64e3237bdc0eff827cfa1a9e4ac Mon Sep 17 00:00:00 2001
From: Kenneth Hoste <kenneth.hoste@ugent.be>
Date: Fri, 4 Oct 2024 21:29:22 +0200
Subject: [PATCH] {bio}[gompi/2023a] ABRicate v1.0.0, any2fasta v0.4.2

---
 .../a/ABRicate/ABRicate-1.0.0-gompi-2023a.eb  | 41 +++++++++++++++++++
 .../any2fasta-0.4.2-GCCcore-12.3.0.eb         | 35 ++++++++++++++++
 2 files changed, 76 insertions(+)
 create mode 100644 easybuild/easyconfigs/a/ABRicate/ABRicate-1.0.0-gompi-2023a.eb
 create mode 100644 easybuild/easyconfigs/a/any2fasta/any2fasta-0.4.2-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/a/ABRicate/ABRicate-1.0.0-gompi-2023a.eb b/easybuild/easyconfigs/a/ABRicate/ABRicate-1.0.0-gompi-2023a.eb
new file mode 100644
index 00000000000..b21e8fda565
--- /dev/null
+++ b/easybuild/easyconfigs/a/ABRicate/ABRicate-1.0.0-gompi-2023a.eb
@@ -0,0 +1,41 @@
+# Author: Pavel Grochal (INUITS)
+# License: GPLv2
+
+easyblock = 'Tarball'
+
+name = 'ABRicate'
+version = '1.0.0'
+
+homepage = 'https://github.com/tseemann/abricate'
+description = "Mass screening of contigs for antimicrobial and virulence genes"
+
+toolchain = {'name': 'gompi', 'version': '2023a'}
+
+# https://github.com/tseemann/abricate
+github_account = 'tseemann'
+source_urls = [GITHUB_LOWER_SOURCE]
+sources = ['v%(version)s.zip']
+checksums = ['e7e2af45e47b887c4dba754af87a24014dcb5552eb3fe2a3fd66bb5359a0daf9']
+
+dependencies = [
+    ('Perl', '5.36.1'),
+    ('any2fasta', '0.4.2'),
+    ('BioPerl', '1.7.8'),
+    ('BLAST+', '2.14.1'),
+]
+
+postinstallcmds = ['%(installdir)s/bin/abricate --setupdb']
+
+sanity_check_paths = {
+    'files': ['bin/abricate', 'bin/abricate-get_db'],
+    'dirs': ['db'],
+}
+
+sanity_check_commands = [
+    "abricate --help",
+    "abricate --list",
+]
+
+modloadmsg = "abricate databases are located in $EBROOTABRICATE/db\n"
+
+moduleclass = 'bio'
diff --git a/easybuild/easyconfigs/a/any2fasta/any2fasta-0.4.2-GCCcore-12.3.0.eb b/easybuild/easyconfigs/a/any2fasta/any2fasta-0.4.2-GCCcore-12.3.0.eb
new file mode 100644
index 00000000000..3f96b328b6a
--- /dev/null
+++ b/easybuild/easyconfigs/a/any2fasta/any2fasta-0.4.2-GCCcore-12.3.0.eb
@@ -0,0 +1,35 @@
+# Author: Pavel Grochal (INUITS)
+# Updated by: Denis Kristak (INUITS)
+# License: GPLv2
+
+easyblock = 'Tarball'
+
+name = 'any2fasta'
+version = '0.4.2'
+
+homepage = 'https://github.com/tseemann/any2fasta'
+description = "Convert various sequence formats to FASTA"
+
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+
+# https://github.com/tseemann/any2fasta
+github_account = 'tseemann'
+source_urls = [GITHUB_SOURCE]
+sources = ['v%(version)s.zip']
+checksums = ['3faa738ab409c7073afe3769e9d32dd5b28a2c12e72c2e4ac6f4e9946ee9a22f']
+
+dependencies = [('Perl', '5.36.1')]
+
+modextrapaths = {'PATH': ''}
+
+sanity_check_paths = {
+    'files': ['any2fasta'],
+    'dirs': [],
+}
+
+sanity_check_commands = [
+    'any2fasta -h',
+    'any2fasta -q %(builddir)s/%(name)s-%(version)s/test.fq',
+]
+
+moduleclass = 'tools'