2_Assembly_Binning_config.yaml

### Config file for assembly/binning pipeline
### RE 02/2022

#assembler you want to use (megahit or metaspades)
assembler: megahit
#path to checkmdb
checkmdb: /projects/mjolnir1/people/ncl550/0_software/checkm_2015
#min contig length for binning
minlength: 1500
#pre-trained environment model for SemiBin (choice of: human_gut, dog_gut, ocean, soil, cat_gut, human_oral, mouse_gut, pig_gut, built_environment, wastewater, global)
#n.b. global is a generic model
#training a new model takes quite a bit of time, and I've not done enough research to deterine whether it's worth the time cost. Possible to implement this as an option in the future though.
env: global