diff --git a/docs/use_cases/model_applications/medium_range/GridStat_fcstGEFS_obsCADB_BinaryObsPOE.py b/docs/use_cases/model_applications/medium_range/GridStat_fcstGEFS_obsCADB_BinaryObsPOE.py
index a6724ae48..93fbd1ca7 100644
--- a/docs/use_cases/model_applications/medium_range/GridStat_fcstGEFS_obsCADB_BinaryObsPOE.py
+++ b/docs/use_cases/model_applications/medium_range/GridStat_fcstGEFS_obsCADB_BinaryObsPOE.py
@@ -88,7 +88,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsGFS_Sfc_MultiField.py b/docs/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsGFS_Sfc_MultiField.py
index abcc53641..bb0b0ebed 100644
--- a/docs/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsGFS_Sfc_MultiField.py
+++ b/docs/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsGFS_Sfc_MultiField.py
@@ -84,7 +84,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsGFS_climoNCEP_MultiField.py b/docs/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsGFS_climoNCEP_MultiField.py
index ae07a0b4b..9ce32cb09 100644
--- a/docs/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsGFS_climoNCEP_MultiField.py
+++ b/docs/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsGFS_climoNCEP_MultiField.py
@@ -91,7 +91,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 #
 # .. dropdown:: StatAnalysisConfig_wrapped
diff --git a/docs/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsOMI_TotalColumnOzone.py b/docs/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsOMI_TotalColumnOzone.py
index e408af43c..c00bd3daa 100644
--- a/docs/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsOMI_TotalColumnOzone.py
+++ b/docs/use_cases/model_applications/medium_range/GridStat_fcstGFS_obsOMI_TotalColumnOzone.py
@@ -82,7 +82,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/medium_range/MTD_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByLead.py b/docs/use_cases/model_applications/medium_range/MTD_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByLead.py
index d9c7a18f7..7ad8939ec 100644
--- a/docs/use_cases/model_applications/medium_range/MTD_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByLead.py
+++ b/docs/use_cases/model_applications/medium_range/MTD_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByLead.py
@@ -101,12 +101,10 @@
 #
 #  .. dropdown:: MTDConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/MTDConfig_wrapped
 #
 #  .. dropdown:: SeriesAnalysisConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/SeriesAnalysisConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/medium_range/PointStat_fcstGFS_obsGDAS_UpperAir_MultiField_PrepBufr.py b/docs/use_cases/model_applications/medium_range/PointStat_fcstGFS_obsGDAS_UpperAir_MultiField_PrepBufr.py
index 9d88a64da..cba9ca5ed 100644
--- a/docs/use_cases/model_applications/medium_range/PointStat_fcstGFS_obsGDAS_UpperAir_MultiField_PrepBufr.py
+++ b/docs/use_cases/model_applications/medium_range/PointStat_fcstGFS_obsGDAS_UpperAir_MultiField_PrepBufr.py
@@ -83,7 +83,6 @@
 #
 # .. dropdown:: PB2NCConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/PB2NCConfig_wrapped
 #
 # .. dropdown:: PointStatConfig_wrapped**
diff --git a/docs/use_cases/model_applications/medium_range/PointStat_fcstGFS_obsNAM_Sfc_MultiField_PrepBufr.py b/docs/use_cases/model_applications/medium_range/PointStat_fcstGFS_obsNAM_Sfc_MultiField_PrepBufr.py
index 3559de6a7..4402590b6 100644
--- a/docs/use_cases/model_applications/medium_range/PointStat_fcstGFS_obsNAM_Sfc_MultiField_PrepBufr.py
+++ b/docs/use_cases/model_applications/medium_range/PointStat_fcstGFS_obsNAM_Sfc_MultiField_PrepBufr.py
@@ -86,7 +86,6 @@
 #
 # .. dropdown:: PB2NCConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/PB2NCConfig_wrapped
 #
 # .. dropdown:: PointStatConfig_wrapped
diff --git a/docs/use_cases/model_applications/medium_range/TCStat_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByInit.py b/docs/use_cases/model_applications/medium_range/TCStat_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByInit.py
index 1f8cb4f62..0a95fbcb7 100644
--- a/docs/use_cases/model_applications/medium_range/TCStat_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByInit.py
+++ b/docs/use_cases/model_applications/medium_range/TCStat_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByInit.py
@@ -131,17 +131,14 @@
 #
 # .. dropdown:: TCPairsConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/TCPairsConfig_wrapped
 #
 # .. dropdown:: TCStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/TCStatConfig_wrapped
 #
 # .. dropdown:: SeriesAnalysisConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/SeriesAnalysisConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/medium_range/TCStat_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByLead.py b/docs/use_cases/model_applications/medium_range/TCStat_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByLead.py
index fa918e10f..337f898f1 100644
--- a/docs/use_cases/model_applications/medium_range/TCStat_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByLead.py
+++ b/docs/use_cases/model_applications/medium_range/TCStat_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByLead.py
@@ -114,17 +114,14 @@
 #
 # .. dropdown:: TCPairsConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/TCPairsConfig_wrapped
 #
 # .. dropdown:: TCStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/TCStatConfig_wrapped
 #
 # .. dropdown:: SeriesAnalysisConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/SeriesAnalysisConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/medium_range/TCStat_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByLead_PyEmbed_Multiple_Diagnostics.py b/docs/use_cases/model_applications/medium_range/TCStat_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByLead_PyEmbed_Multiple_Diagnostics.py
index 41ab664a0..1f2a250b4 100644
--- a/docs/use_cases/model_applications/medium_range/TCStat_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByLead_PyEmbed_Multiple_Diagnostics.py
+++ b/docs/use_cases/model_applications/medium_range/TCStat_SeriesAnalysis_fcstGFS_obsGFS_FeatureRelative_SeriesByLead_PyEmbed_Multiple_Diagnostics.py
@@ -180,17 +180,14 @@
 #
 # .. dropdown:: TCPairsConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/TCPairsConfig_wrapped
 #
 # .. dropdown:: TCStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/TCStatConfig_wrapped
 #
 # .. dropdown:: SeriesAnalysisConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/SeriesAnalysisConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/pbl/PointStat_fcstHRRR_obsAMDAR_PBLH_PyEmbed.py b/docs/use_cases/model_applications/pbl/PointStat_fcstHRRR_obsAMDAR_PBLH_PyEmbed.py
index f4dff21ae..e970786c5 100644
--- a/docs/use_cases/model_applications/pbl/PointStat_fcstHRRR_obsAMDAR_PBLH_PyEmbed.py
+++ b/docs/use_cases/model_applications/pbl/PointStat_fcstHRRR_obsAMDAR_PBLH_PyEmbed.py
@@ -90,7 +90,6 @@
 #
 # .. dropdown:: met_config/PointStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/PointStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/precipitation/EnsembleStat_fcstWOFS_obsWOFS.py b/docs/use_cases/model_applications/precipitation/EnsembleStat_fcstWOFS_obsWOFS.py
index fdc8e5f28..5c230dd1c 100644
--- a/docs/use_cases/model_applications/precipitation/EnsembleStat_fcstWOFS_obsWOFS.py
+++ b/docs/use_cases/model_applications/precipitation/EnsembleStat_fcstWOFS_obsWOFS.py
@@ -84,17 +84,11 @@
 #
 # .. dropdown:: EnsembleStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/EnsembleStatConfig_wrapped
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
-#
-# For more information on the basic requirements to utilize Python Embedding in METplus, 
-# please refer to the MET User’s Guide section on
-# `Python embedding <https://met.readthedocs.io/en/latest/Users_Guide/appendixF.html#appendix-f-python-embedding>`_ 
 
 ##############################################################################
 # Python Embedding
diff --git a/docs/use_cases/model_applications/precipitation/GenEnsProd_fcstHRRRE_FcstOnly_NetCDF.py b/docs/use_cases/model_applications/precipitation/GenEnsProd_fcstHRRRE_FcstOnly_NetCDF.py
index 923afc22c..287ccbb0f 100644
--- a/docs/use_cases/model_applications/precipitation/GenEnsProd_fcstHRRRE_FcstOnly_NetCDF.py
+++ b/docs/use_cases/model_applications/precipitation/GenEnsProd_fcstHRRRE_FcstOnly_NetCDF.py
@@ -101,7 +101,6 @@
 #
 # .. dropdown:: met_config/GenEnsProdConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GenEnsProdConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/precipitation/GridStat_fcstGFS_obsCCPA_GRIB.py b/docs/use_cases/model_applications/precipitation/GridStat_fcstGFS_obsCCPA_GRIB.py
index 39cee2157..9c3310a12 100644
--- a/docs/use_cases/model_applications/precipitation/GridStat_fcstGFS_obsCCPA_GRIB.py
+++ b/docs/use_cases/model_applications/precipitation/GridStat_fcstGFS_obsCCPA_GRIB.py
@@ -88,7 +88,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/precipitation/GridStat_fcstHREFmean_obsStgIV_Gempak.py b/docs/use_cases/model_applications/precipitation/GridStat_fcstHREFmean_obsStgIV_Gempak.py
index e45a8dbfb..11feed8b5 100644
--- a/docs/use_cases/model_applications/precipitation/GridStat_fcstHREFmean_obsStgIV_Gempak.py
+++ b/docs/use_cases/model_applications/precipitation/GridStat_fcstHREFmean_obsStgIV_Gempak.py
@@ -108,7 +108,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/precipitation/GridStat_fcstHREFmean_obsStgIV_NetCDF.py b/docs/use_cases/model_applications/precipitation/GridStat_fcstHREFmean_obsStgIV_NetCDF.py
index f4bff3863..1442b2ce1 100644
--- a/docs/use_cases/model_applications/precipitation/GridStat_fcstHREFmean_obsStgIV_NetCDF.py
+++ b/docs/use_cases/model_applications/precipitation/GridStat_fcstHREFmean_obsStgIV_NetCDF.py
@@ -89,7 +89,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/precipitation/GridStat_fcstHRRR-TLE_obsStgIV_GRIB.py b/docs/use_cases/model_applications/precipitation/GridStat_fcstHRRR-TLE_obsStgIV_GRIB.py
index 13b55f96d..21c33a1dc 100644
--- a/docs/use_cases/model_applications/precipitation/GridStat_fcstHRRR-TLE_obsStgIV_GRIB.py
+++ b/docs/use_cases/model_applications/precipitation/GridStat_fcstHRRR-TLE_obsStgIV_GRIB.py
@@ -101,7 +101,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/precipitation/MTD_fcstHRRR-TLE_FcstOnly_RevisionSeries_GRIB.py b/docs/use_cases/model_applications/precipitation/MTD_fcstHRRR-TLE_FcstOnly_RevisionSeries_GRIB.py
index 34a25f643..bd5eafbff 100644
--- a/docs/use_cases/model_applications/precipitation/MTD_fcstHRRR-TLE_FcstOnly_RevisionSeries_GRIB.py
+++ b/docs/use_cases/model_applications/precipitation/MTD_fcstHRRR-TLE_FcstOnly_RevisionSeries_GRIB.py
@@ -85,7 +85,6 @@
 #
 # .. dropdown:: MTDConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/MTDConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/precipitation/MTD_fcstHRRR-TLE_obsMRMS.py b/docs/use_cases/model_applications/precipitation/MTD_fcstHRRR-TLE_obsMRMS.py
index d3388898d..e8fd06797 100644
--- a/docs/use_cases/model_applications/precipitation/MTD_fcstHRRR-TLE_obsMRMS.py
+++ b/docs/use_cases/model_applications/precipitation/MTD_fcstHRRR-TLE_obsMRMS.py
@@ -85,7 +85,6 @@
 #
 # .. dropdown:: MTDConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/MTDConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/precipitation/PointStat_fcstMULTI_obsMETAR_PtypeComparisons.py b/docs/use_cases/model_applications/precipitation/PointStat_fcstMULTI_obsMETAR_PtypeComparisons.py
index 43a391b94..9aee48507 100644
--- a/docs/use_cases/model_applications/precipitation/PointStat_fcstMULTI_obsMETAR_PtypeComparisons.py
+++ b/docs/use_cases/model_applications/precipitation/PointStat_fcstMULTI_obsMETAR_PtypeComparisons.py
@@ -85,14 +85,12 @@
 # If there is a setting in the MET configuration file that is currently not supported by METplus you'd like to control, please refer to:
 # :ref:`Overriding Unsupported MET config file settings<met-config-overrides>`
 #
-# .. dropdown:: **PB2NCConfig_wrapped**
+# .. dropdown:: PB2NCConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/PB2NCConfig_wrapped
 #
-# .. dropdown:: **PointStatConfig_wrapped**
+# .. dropdown:: PointStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/PointStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/s2s/GridStat_SeriesAnalysis_fcstNMME_obsCPC_seasonal_forecast.py b/docs/use_cases/model_applications/s2s/GridStat_SeriesAnalysis_fcstNMME_obsCPC_seasonal_forecast.py
index d6a236eed..f2340d854 100644
--- a/docs/use_cases/model_applications/s2s/GridStat_SeriesAnalysis_fcstNMME_obsCPC_seasonal_forecast.py
+++ b/docs/use_cases/model_applications/s2s/GridStat_SeriesAnalysis_fcstNMME_obsCPC_seasonal_forecast.py
@@ -211,12 +211,10 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 #
 # .. dropdown:: SeriesAnalysisConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/SeriesAnalysisConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/s2s/GridStat_fcstCFSv2_obsGHCNCAMS_MultiTercile.py b/docs/use_cases/model_applications/s2s/GridStat_fcstCFSv2_obsGHCNCAMS_MultiTercile.py
index b8d6355d3..4e08ffda6 100644
--- a/docs/use_cases/model_applications/s2s/GridStat_fcstCFSv2_obsGHCNCAMS_MultiTercile.py
+++ b/docs/use_cases/model_applications/s2s/GridStat_fcstCFSv2_obsGHCNCAMS_MultiTercile.py
@@ -89,7 +89,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/s2s/SeriesAnalysis_fcstCFSv2_obsGHCNCAMS_climoStandardized_MultiStatisticTool.py b/docs/use_cases/model_applications/s2s/SeriesAnalysis_fcstCFSv2_obsGHCNCAMS_climoStandardized_MultiStatisticTool.py
index 01927ca8e..f759dc94e 100644
--- a/docs/use_cases/model_applications/s2s/SeriesAnalysis_fcstCFSv2_obsGHCNCAMS_climoStandardized_MultiStatisticTool.py
+++ b/docs/use_cases/model_applications/s2s/SeriesAnalysis_fcstCFSv2_obsGHCNCAMS_climoStandardized_MultiStatisticTool.py
@@ -92,17 +92,14 @@
 #
 # .. dropdown:: SeriesAnalysisConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/SeriesAnalysisConfig_wrapped
 #
 # .. dropdown:: GenEnsProdConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GenEnsProdConfig_wrapped
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/s2s/TCGen_fcstGFSO_obsBDECKS_GDF_TDF.py b/docs/use_cases/model_applications/s2s/TCGen_fcstGFSO_obsBDECKS_GDF_TDF.py
index 638dd7a49..1169d6801 100644
--- a/docs/use_cases/model_applications/s2s/TCGen_fcstGFSO_obsBDECKS_GDF_TDF.py
+++ b/docs/use_cases/model_applications/s2s/TCGen_fcstGFSO_obsBDECKS_GDF_TDF.py
@@ -150,7 +150,6 @@
 #
 # .. dropdown:: TCGenConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/TCGenConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/s2s_mjo/UserScript_obsCFSR_obsOnly_MJO_ENSO.py b/docs/use_cases/model_applications/s2s_mjo/UserScript_obsCFSR_obsOnly_MJO_ENSO.py
index a7bd6813c..23d0f90c2 100644
--- a/docs/use_cases/model_applications/s2s_mjo/UserScript_obsCFSR_obsOnly_MJO_ENSO.py
+++ b/docs/use_cases/model_applications/s2s_mjo/UserScript_obsCFSR_obsOnly_MJO_ENSO.py
@@ -81,7 +81,7 @@
 
 ##############################################################################
 # MET Configuration
-# ---------------------
+# -----------------
 #
 # METplus sets environment variables based on user settings in the METplus
 # configuration file. See :ref:`How METplus controls MET config file settings<metplus-control-met>` for more details.
@@ -98,7 +98,7 @@
 
 ##############################################################################
 # Python Scripts
-# ----------------
+# --------------
 #
 # The MJO-ENSO driver script orchestrates the calculation of the MaKE and MaKI indices and 
 # the generation of a text file and a plot for the indices:
diff --git a/docs/use_cases/model_applications/short_range/EnsembleStat_fcstHRRRE_obsHRRRE_Sfc_MultiField.py b/docs/use_cases/model_applications/short_range/EnsembleStat_fcstHRRRE_obsHRRRE_Sfc_MultiField.py
index dd5c4f75e..bfa6375b7 100644
--- a/docs/use_cases/model_applications/short_range/EnsembleStat_fcstHRRRE_obsHRRRE_Sfc_MultiField.py
+++ b/docs/use_cases/model_applications/short_range/EnsembleStat_fcstHRRRE_obsHRRRE_Sfc_MultiField.py
@@ -93,7 +93,6 @@
 #
 # .. dropdown:: EnsembleStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/EnsembleStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/short_range/GenEnsProd_fcstHRRR_fcstOnly_SurrogateSevere.py b/docs/use_cases/model_applications/short_range/GenEnsProd_fcstHRRR_fcstOnly_SurrogateSevere.py
index f07b8d51d..096d63f34 100644
--- a/docs/use_cases/model_applications/short_range/GenEnsProd_fcstHRRR_fcstOnly_SurrogateSevere.py
+++ b/docs/use_cases/model_applications/short_range/GenEnsProd_fcstHRRR_fcstOnly_SurrogateSevere.py
@@ -90,7 +90,6 @@
 #
 # .. dropdown:: GenEnsProdConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GenEnsProdConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/short_range/GridStat_fcstFV3_obsGOES_BrightnessTempDmap.py b/docs/use_cases/model_applications/short_range/GridStat_fcstFV3_obsGOES_BrightnessTempDmap.py
index 6e7b8b42e..5f687915a 100644
--- a/docs/use_cases/model_applications/short_range/GridStat_fcstFV3_obsGOES_BrightnessTempDmap.py
+++ b/docs/use_cases/model_applications/short_range/GridStat_fcstFV3_obsGOES_BrightnessTempDmap.py
@@ -79,7 +79,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/short_range/GridStat_fcstHRRR_obsPracPerfect_SurrogateSevere.py b/docs/use_cases/model_applications/short_range/GridStat_fcstHRRR_obsPracPerfect_SurrogateSevere.py
index e39127f7b..8788d060c 100644
--- a/docs/use_cases/model_applications/short_range/GridStat_fcstHRRR_obsPracPerfect_SurrogateSevere.py
+++ b/docs/use_cases/model_applications/short_range/GridStat_fcstHRRR_obsPracPerfect_SurrogateSevere.py
@@ -75,7 +75,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/short_range/GridStat_fcstHRRR_obsPracPerfect_SurrogateSevereProb.py b/docs/use_cases/model_applications/short_range/GridStat_fcstHRRR_obsPracPerfect_SurrogateSevereProb.py
index 1b34cf6a0..e17d815b8 100644
--- a/docs/use_cases/model_applications/short_range/GridStat_fcstHRRR_obsPracPerfect_SurrogateSevereProb.py
+++ b/docs/use_cases/model_applications/short_range/GridStat_fcstHRRR_obsPracPerfect_SurrogateSevereProb.py
@@ -77,7 +77,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/short_range/METdbLoad_fcstFV3_obsGoes_BrightnessTemp.py b/docs/use_cases/model_applications/short_range/METdbLoad_fcstFV3_obsGoes_BrightnessTemp.py
index 86f38487d..604ee3ac8 100644
--- a/docs/use_cases/model_applications/short_range/METdbLoad_fcstFV3_obsGoes_BrightnessTemp.py
+++ b/docs/use_cases/model_applications/short_range/METdbLoad_fcstFV3_obsGoes_BrightnessTemp.py
@@ -75,7 +75,6 @@
 ##############################################################################
 # MET Configuration
 # -----------------
-# [UPDATE_SECTION_CONTENT]
 #
 # METplus sets environment variables based on user settings in the METplus
 # configuration file. See :ref:`How METplus controls MET config file settings<metplus-control-met>` for more details.
diff --git a/docs/use_cases/model_applications/short_range/MODEMultivar_fcstHRRR_obsMRMS_HRRRanl.py b/docs/use_cases/model_applications/short_range/MODEMultivar_fcstHRRR_obsMRMS_HRRRanl.py
index 2d945d18d..ef17d7882 100644
--- a/docs/use_cases/model_applications/short_range/MODEMultivar_fcstHRRR_obsMRMS_HRRRanl.py
+++ b/docs/use_cases/model_applications/short_range/MODEMultivar_fcstHRRR_obsMRMS_HRRRanl.py
@@ -106,7 +106,6 @@
 #
 # .. dropdown:: MODEConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/MODEConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/short_range/MODE_fcstFV3_obsGOES_BrightnessTemp.py b/docs/use_cases/model_applications/short_range/MODE_fcstFV3_obsGOES_BrightnessTemp.py
index b0919278e..d738aed66 100644
--- a/docs/use_cases/model_applications/short_range/MODE_fcstFV3_obsGOES_BrightnessTemp.py
+++ b/docs/use_cases/model_applications/short_range/MODE_fcstFV3_obsGOES_BrightnessTemp.py
@@ -78,7 +78,6 @@
 #
 # .. dropdown:: MODEConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/MODEConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/short_range/MODE_fcstFV3_obsGOES_BrightnessTempObjs.py b/docs/use_cases/model_applications/short_range/MODE_fcstFV3_obsGOES_BrightnessTempObjs.py
index bb494af9f..013c28a47 100644
--- a/docs/use_cases/model_applications/short_range/MODE_fcstFV3_obsGOES_BrightnessTempObjs.py
+++ b/docs/use_cases/model_applications/short_range/MODE_fcstFV3_obsGOES_BrightnessTempObjs.py
@@ -81,12 +81,10 @@
 #
 # .. dropdown:: MODEConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/MODEConfig_wrapped
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/short_range/MODE_fcstHRRR_obsMRMS_Hail_GRIB2.py b/docs/use_cases/model_applications/short_range/MODE_fcstHRRR_obsMRMS_Hail_GRIB2.py
index 28db8f524..019cfb655 100644
--- a/docs/use_cases/model_applications/short_range/MODE_fcstHRRR_obsMRMS_Hail_GRIB2.py
+++ b/docs/use_cases/model_applications/short_range/MODE_fcstHRRR_obsMRMS_Hail_GRIB2.py
@@ -84,7 +84,6 @@
 #
 # .. dropdown:: MODEConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/MODEConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/short_range/Point2Grid_obsLSR_ObsOnly_PracticallyPerfect.py b/docs/use_cases/model_applications/short_range/Point2Grid_obsLSR_ObsOnly_PracticallyPerfect.py
index c13d140e0..c7a95b479 100644
--- a/docs/use_cases/model_applications/short_range/Point2Grid_obsLSR_ObsOnly_PracticallyPerfect.py
+++ b/docs/use_cases/model_applications/short_range/Point2Grid_obsLSR_ObsOnly_PracticallyPerfect.py
@@ -86,13 +86,7 @@
 #
 # .. dropdown:: Ascii2NcConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/Ascii2NcConfig_wrapped
-#
-# See the following files for more information about the environment variables set in this configuration file.
-#
-# parm/use_cases/met_tool_wrapper/Point2Grid/Point2Grid.py
-# parm/use_cases/met_tool_wrapper/RegridDataPlane/RegridDataPlane.py
 
 ##############################################################################
 # Python Embedding
diff --git a/docs/use_cases/model_applications/short_range/UserScript_fcstFV3_fcstOnly_PhysicsTendency_Planview.py b/docs/use_cases/model_applications/short_range/UserScript_fcstFV3_fcstOnly_PhysicsTendency_Planview.py
index a6a836a60..be714f4e3 100644
--- a/docs/use_cases/model_applications/short_range/UserScript_fcstFV3_fcstOnly_PhysicsTendency_Planview.py
+++ b/docs/use_cases/model_applications/short_range/UserScript_fcstFV3_fcstOnly_PhysicsTendency_Planview.py
@@ -104,11 +104,6 @@
 # -----------------
 #
 # No MET tools are used in this use case.
-#
-# METplus sets environment variables based on user settings in the METplus
-# configuration file. 
-# See :ref:`How METplus controls MET config file settings<metplus-control-met>`
-# for more details. 
 
 ##############################################################################
 # Python Embedding
diff --git a/docs/use_cases/model_applications/short_range/UserScript_fcstFV3_fcstOnly_PhysicsTendency_VerticalCrossSection.py b/docs/use_cases/model_applications/short_range/UserScript_fcstFV3_fcstOnly_PhysicsTendency_VerticalCrossSection.py
index f6c9db015..737d60727 100644
--- a/docs/use_cases/model_applications/short_range/UserScript_fcstFV3_fcstOnly_PhysicsTendency_VerticalCrossSection.py
+++ b/docs/use_cases/model_applications/short_range/UserScript_fcstFV3_fcstOnly_PhysicsTendency_VerticalCrossSection.py
@@ -92,11 +92,6 @@
 # -----------------
 #
 # No MET tools are used in this use case.
-#
-# METplus sets environment variables based on user settings in the METplus configuration file. 
-# See :ref:`How METplus controls MET config file settings<metplus-control-met>` for more details. 
-#
-# .. note:: See the :ref:`MODE MET Configuration<mode-met-conf>` section of the User's Guide for more information on the environment variables used in the file below:
 
 ##############################################################################
 # Python Embedding
diff --git a/docs/use_cases/model_applications/short_range/UserScript_fcstFV3_fcstOnly_PhysicsTendency_VerticalProfile.py b/docs/use_cases/model_applications/short_range/UserScript_fcstFV3_fcstOnly_PhysicsTendency_VerticalProfile.py
index f90faf99b..f35badb5a 100644
--- a/docs/use_cases/model_applications/short_range/UserScript_fcstFV3_fcstOnly_PhysicsTendency_VerticalProfile.py
+++ b/docs/use_cases/model_applications/short_range/UserScript_fcstFV3_fcstOnly_PhysicsTendency_VerticalProfile.py
@@ -110,11 +110,6 @@
 # -----------------
 #
 # No MET tools are used in this use case.
-#
-# METplus sets environment variables based on user settings in the METplus configuration file. 
-# See :ref:`How METplus controls MET config file settings<metplus-control-met>` for more details. 
-#
-# .. note:: See the :ref:`MODE MET Configuration<mode-met-conf>` section of the User's Guide for more information on the environment variables used in the file below:
 
 ##############################################################################
 # Python Embedding
diff --git a/docs/use_cases/model_applications/space_weather/GridStat_fcstGloTEC_obsGloTEC_vx7.py b/docs/use_cases/model_applications/space_weather/GridStat_fcstGloTEC_obsGloTEC_vx7.py
index e4c3af319..06c7e02cb 100644
--- a/docs/use_cases/model_applications/space_weather/GridStat_fcstGloTEC_obsGloTEC_vx7.py
+++ b/docs/use_cases/model_applications/space_weather/GridStat_fcstGloTEC_obsGloTEC_vx7.py
@@ -116,7 +116,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/tc_and_extra_tc/CyclonePlotter_fcstGFS_obsGFS_UserScript_ExtraTC.py b/docs/use_cases/model_applications/tc_and_extra_tc/CyclonePlotter_fcstGFS_obsGFS_UserScript_ExtraTC.py
index 04e90c747..1fcb93b8b 100644
--- a/docs/use_cases/model_applications/tc_and_extra_tc/CyclonePlotter_fcstGFS_obsGFS_UserScript_ExtraTC.py
+++ b/docs/use_cases/model_applications/tc_and_extra_tc/CyclonePlotter_fcstGFS_obsGFS_UserScript_ExtraTC.py
@@ -100,7 +100,6 @@
 #
 # .. dropdown:: TCPairsConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/TCPairsConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/tc_and_extra_tc/GridStat_fcstHAFS_obsTDR_NetCDF.py b/docs/use_cases/model_applications/tc_and_extra_tc/GridStat_fcstHAFS_obsTDR_NetCDF.py
index dda48a0ab..7ec3a1ea4 100644
--- a/docs/use_cases/model_applications/tc_and_extra_tc/GridStat_fcstHAFS_obsTDR_NetCDF.py
+++ b/docs/use_cases/model_applications/tc_and_extra_tc/GridStat_fcstHAFS_obsTDR_NetCDF.py
@@ -91,7 +91,6 @@
 #
 # .. dropdown:: GridStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/GridStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/tc_and_extra_tc/Plotter_fcstGFS_obsGFS_ExtraTC.py b/docs/use_cases/model_applications/tc_and_extra_tc/Plotter_fcstGFS_obsGFS_ExtraTC.py
index e941bbfca..e3b8edd2f 100644
--- a/docs/use_cases/model_applications/tc_and_extra_tc/Plotter_fcstGFS_obsGFS_ExtraTC.py
+++ b/docs/use_cases/model_applications/tc_and_extra_tc/Plotter_fcstGFS_obsGFS_ExtraTC.py
@@ -78,7 +78,6 @@
 #
 # .. dropdown:: TCPairsConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/TCPairsConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/tc_and_extra_tc/TCGen_fcstGFS_obsBDECK_2021season.py b/docs/use_cases/model_applications/tc_and_extra_tc/TCGen_fcstGFS_obsBDECK_2021season.py
index 36b77a052..a2fcb1043 100644
--- a/docs/use_cases/model_applications/tc_and_extra_tc/TCGen_fcstGFS_obsBDECK_2021season.py
+++ b/docs/use_cases/model_applications/tc_and_extra_tc/TCGen_fcstGFS_obsBDECK_2021season.py
@@ -84,7 +84,6 @@
 #
 # .. dropdown:: TCGenConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/TCGenConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/tc_and_extra_tc/TCPairs_TCStat_fcstADECK_obsBDECK_ATCF_BasicExample.py b/docs/use_cases/model_applications/tc_and_extra_tc/TCPairs_TCStat_fcstADECK_obsBDECK_ATCF_BasicExample.py
index 8e36dca06..f89923ba8 100644
--- a/docs/use_cases/model_applications/tc_and_extra_tc/TCPairs_TCStat_fcstADECK_obsBDECK_ATCF_BasicExample.py
+++ b/docs/use_cases/model_applications/tc_and_extra_tc/TCPairs_TCStat_fcstADECK_obsBDECK_ATCF_BasicExample.py
@@ -106,12 +106,10 @@
 #
 # .. dropdown:: TCPairsConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/TCPairsConfig_wrapped
 #
 # .. dropdown:: TCStatConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/TCStatConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/tc_and_extra_tc/TCRMW_fcstGFS_fcstOnly_gonzalo.py b/docs/use_cases/model_applications/tc_and_extra_tc/TCRMW_fcstGFS_fcstOnly_gonzalo.py
index a7b7b55e8..2cbe3287d 100644
--- a/docs/use_cases/model_applications/tc_and_extra_tc/TCRMW_fcstGFS_fcstOnly_gonzalo.py
+++ b/docs/use_cases/model_applications/tc_and_extra_tc/TCRMW_fcstGFS_fcstOnly_gonzalo.py
@@ -78,7 +78,6 @@
 #
 # .. dropdown:: TCRMWConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/TCRMWConfig_wrapped
 
 ##############################################################################
diff --git a/docs/use_cases/model_applications/tc_and_extra_tc/UserScript_ASCII2NC_PointStat_fcstHAFS_obsFRD_NetCDF.py b/docs/use_cases/model_applications/tc_and_extra_tc/UserScript_ASCII2NC_PointStat_fcstHAFS_obsFRD_NetCDF.py
index 339e2e342..48c56963f 100644
--- a/docs/use_cases/model_applications/tc_and_extra_tc/UserScript_ASCII2NC_PointStat_fcstHAFS_obsFRD_NetCDF.py
+++ b/docs/use_cases/model_applications/tc_and_extra_tc/UserScript_ASCII2NC_PointStat_fcstHAFS_obsFRD_NetCDF.py
@@ -89,7 +89,6 @@
 #
 # .. dropdown:: Ascii2NcConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/Ascii2NcConfig_wrapped
 #
 # .. dropdown:: PointStatConfig_wrapped
diff --git a/docs/use_cases/model_applications/unstructured_grids/StatAnalysis_fcstLFRIC_UGRID_obsASCII_PyEmbed.py b/docs/use_cases/model_applications/unstructured_grids/StatAnalysis_fcstLFRIC_UGRID_obsASCII_PyEmbed.py
index b904adab0..38883e1b8 100644
--- a/docs/use_cases/model_applications/unstructured_grids/StatAnalysis_fcstLFRIC_UGRID_obsASCII_PyEmbed.py
+++ b/docs/use_cases/model_applications/unstructured_grids/StatAnalysis_fcstLFRIC_UGRID_obsASCII_PyEmbed.py
@@ -98,7 +98,6 @@
 #
 # .. dropdown:: STATAnalysisConfig_wrapped
 #
-#   .. highlight:: bash
 #   .. literalinclude:: ../../../../parm/met_config/STATAnalysisConfig_wrapped
 
 ##############################################################################