solved problem with deprecated 'matplotlib.cm.get_cmap' function in report class
-> changed to 'matplotlib.colormaps['name']'

- added ideas and possible new code for io #85, #44 and investigate to CB_under_construction
- bit of restructering in io and investigate
- bit of Specimen integration in new code block CB_under_construction #99

- added some more comments

Big restructering of the modules inner structure + added functionalities from the construction site into the main modules

fixed a wrong connection
moved dev outside of src to truly be able to test the code

Added save and visualise functions to the report

small update for ModelInfoReport - can now display unbalanced reaction counts graphically
#99

…inegems into structure-update

preparation for further integration #99

…inegems into structure-update

…inegems into structure-update

…inegems into structure-update

- more docstrings for gapfill.py
- moved old gapfill docs to dev

- Added handling of autodoc to exclude specific members

- Also added Finn Mier as author as Reihaneh's script is og from him
- Renamed all missing_reacs occurences to missing_reactions to fit subclasses to parent class

- Python Notebook to generate oil content from VMH specs & specs in the paper
- Files used for the generation in a ZIP-archive

…dev-2