diff --git a/src/refinegems/curation/curate.py b/src/refinegems/curation/curate.py index c631edc..9d59809 100644 --- a/src/refinegems/curation/curate.py +++ b/src/refinegems/curation/curate.py @@ -40,7 +40,9 @@ def add_reactions_from_table(model: libModel, table: pd.DataFrame, email: str) -> libModel: """Wrapper function to use with table format given in data/manual_curation.xlsx, sheet gapfill: Adds all reactions with their info given in the table to the given model - **Deprecation warning**: will be deprecated in a future update. + .. warning:: + .. deprecated:: 2.0.0 + Use :py:func:`~refinegems.curation.gapfill.gapfill_model` instead. Args: - model (libModel): @@ -88,7 +90,9 @@ def add_reactions_from_table(model: libModel, table: pd.DataFrame, email: str) - def update_annotations_from_table(model: libModel, table: pd.DataFrame) -> libModel: """Wrapper function to use with table format given in data/manual_curation.xlsx, sheet metabs: Updates annotation of metabolites given in the table - **Deprecation warning**: will be deprecated in a future update. + .. warning:: + .. deprecated:: 2.0.0 + Use :py:func:`~refinegems.curation.gapfill.gapfill_model` instead if you want to add completely new content. Args: - model (libModel):