diff --git a/docs/source/database/intro.rst b/docs/source/database/intro.rst index 116d38b..16e06dd 100644 --- a/docs/source/database/intro.rst +++ b/docs/source/database/intro.rst @@ -33,11 +33,11 @@ Working with the Data For understanding the database and the data it contains, it is vital to understand the meaning of an *in silico* medium and how to transform a medium e.g. from the labratory (*in vivo* medium) -into an *in silico* medium. +into an *in silico* medium. Our standardised aproach is described in :doc:`in_silico_media_generation`. -Afterwards, you can find a detailed explaination of the database architecture. +You can find a detailed explanation of the database architecture under :doc:`db_architecture`. -Additionally, the last point refers to more information about accessing the database. +Additionally, the last point refers to more information about accessing the database. ``TODO`` Worauf bezieht sich das hier genau? .. toctree:: diff --git a/docs/source/index.rst b/docs/source/index.rst index 5e5ce1a..5e1588f 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -56,7 +56,7 @@ Connections to other tools ^^^^^^^^^^^^^^^^^^^^^^^^^^ ``refineGEMs`` also provides access points for other tools: -* Reporting the `Memote `__ score or generating a complete `Memote `__ report +* Reporting the `MEMOTE `__ score or generating a complete MEMOTE report * Updating the SBO-Term annotations based on `SBOannotator `__\ :footcite:p:`Leonidou2023_sboann` * Balancing the masses and charges with `MassChargeCuration (MCC) `__\ :footcite:p:`Finnem2023_mcc` * Correcting a biomass objective function with `BOFdat `__ diff --git a/docs/source/installation.rst b/docs/source/installation.rst index 1652992..02f6307 100644 --- a/docs/source/installation.rst +++ b/docs/source/installation.rst @@ -20,7 +20,3 @@ To install refineGEMs as Python package from `PyPI `__. - -.. note:: - - TODO: Add content about how to install BOFdat and MCC!