From 2aa365ae354359a14ed48d0fec5ca85747172e65 Mon Sep 17 00:00:00 2001 From: "Demis D. John" Date: Wed, 27 Mar 2019 01:04:47 -0700 Subject: [PATCH] info on custom functions --- README.md | 11 ++++++++--- 1 file changed, 8 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 7b0d603..a4d377e 100644 --- a/README.md +++ b/README.md @@ -18,7 +18,8 @@ Download the most recent [Release from Github](https://github.com/demisjohn/Micr View the [Instructions PDF on Github](https://github.com/demisjohn/Microscope-Measurement-Tools/blob/master/Microscope%20Meas.%20-%20Calibration%20instructions.pdf) for the Installation & Calibration procedure. -Three files are included: +## Usage +Three files are included, which will show up in your FIJI "Analyze" menu: + **Choose_Microscope_Calibration.py** + *Opens the "Choose Calibration" window, for setting the measurement scale to a preconfigured value.* @@ -27,11 +28,15 @@ Three files are included: + **Microscope_Calibrations_user_settings.py** + *User-editable Settings file that contains your pre-configured scale calibrations, along with settings for drawing annotations (background/text color etc.)* + Please see the Instructions PDF for detailed instructions on setting up your settings file with Calibrations. - - + [MMT-Choose-Cal-Pic]: http://fiji.sc/_images/c/cd/Microscope_Meas_Tools_-_Choose_Calibration_01.png [MMT-Annot-Line-Pic]: http://fiji.sc/_images/f/f4/Microscope_Meas_Tools_-_Draw_Meas_Line.png +### Custom Calibration Functions +A custom function can be added to the list of available calibrations. A sub-folder is included showing an example of how to do this. The example is for a JEOL SEM, and the function will load an accompanying text file to determine the scale of the SEM image. + +See the files in the sub-folder "*MScopeCals - custom function example*" for more info. + ## Contact Feel free to add Issues/feature requests, or even better, Fork the `git` repository and submit your own updates (see this [how-to](http://kbroman.org/github_tutorial/pages/fork.html))!