v1.1.8

dellytools · Oct 10, 2023 · 4436481 · 4436481
1 parent 56839a9
commit 4436481
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Showing 2 changed files with 11 additions and 11 deletions.
diff --git a/src/delly.cpp b/src/delly.cpp
@@ -43,19 +43,19 @@ displayUsage() {
   std::cerr << "Long-read SV calling:" << std::endl;
   std::cerr << "    lr           long-read SV discovery" << std::endl;
   std::cerr << std::endl;
-  std::cerr << "Pan-genome based SV calling (work-in-progress):" << std::endl;
-  std::cerr << "    pg           pan-genome SV discovery" << std::endl;
-  std::cerr << std::endl;
-  std::cerr << "Assembly-based SV calling (work-in-progress):" << std::endl;
-  std::cerr << "    asm          assembly SV site discovery" << std::endl;
-  std::cerr << std::endl;
+  //std::cerr << "Pan-genome based SV calling (work-in-progress):" << std::endl;
+  //std::cerr << "    pg           pan-genome SV discovery" << std::endl;
+  //std::cerr << std::endl;
+  //std::cerr << "Assembly-based SV calling (work-in-progress):" << std::endl;
+  //std::cerr << "    asm          assembly SV site discovery" << std::endl;
+  //std::cerr << std::endl;
   std::cerr << "Copy-number variant calling:" << std::endl;
   std::cerr << "    cnv          discover and genotype copy-number variants" << std::endl;
   std::cerr << "    classify     classify somatic or germline copy-number variants" << std::endl;
-  std::cerr << std::endl;
-  std::cerr << "Multi-sample VCF operations:" << std::endl;
-  std::cerr << "    markdup      mark duplicate SV sites based on SV allele and GT concordance" << std::endl;
-  std::cerr << "    compvcf      compare multi-sample VCF file to a ground truth VCF file" << std::endl;
+  //std::cerr << std::endl;
+  //std::cerr << "Multi-sample VCF operations:" << std::endl;
+  //std::cerr << "    markdup      mark duplicate SV sites based on SV allele and GT concordance" << std::endl;
+  //std::cerr << "    compvcf      compare multi-sample VCF file to a ground truth VCF file" << std::endl;
   //std::cerr << "Deprecated:" << std::endl;
   //std::cerr << "    dpe          double paired-end signatures" << std::endl;
   //std::cerr << "    chimera      ONT chimera flagging" << std::endl;

diff --git a/src/version.h b/src/version.h
@@ -5,7 +5,7 @@ namespace torali
 {
 
 
-  std::string dellyVersionNumber = "1.1.7";
+  std::string dellyVersionNumber = "1.1.8";
 
   inline 
     void printTitle(std::string const& title)