Development #22

	name: Code Quality with pylint, pytest, black

	on: [push, pull_request]

	jobs:
	pylint:
	runs-on: ubuntu-latest

	steps:
	- name: Check out code
	uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.9'

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r configs/requirements.txt
	pip install pylint

	- name: Run pylint
	continue-on-error: true
	run: \|
	find qDNA tools -type f -name "*.py" ! -name "__init__.py" \| xargs pylint

	pytest:
	runs-on: ubuntu-latest

	steps:
	- name: Check out code
	uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.9'

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r configs/requirements.txt
	pip install pytest

	- name: Run tests with pytest
	run: python -m pytest

	black:
	runs-on: ubuntu-latest

	steps:
	- name: Check out code
	uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.9'

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install black

	- name: Run black
	continue-on-error: true
	run: black --check .

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