planemo.yml

name: Planemo
on: [push, pull_request]

env:
  GALAXY_BRANCH: release_24.1

defaults:
  run:
    shell: bash -l {0}

# setup micromamba doesn't work as galaxy setup by planemo requires conda.
# installing conda over into micromamba built env screws up the PATH
# setup-miniconda + changing over to libmamba to solve is the easiest workaround

jobs:
  planemo_test:
    name: Planemo test
    runs-on: ubuntu-latest
    strategy:
      matrix:
        chunk: [1, 2, 3]
    steps:
    - uses: actions/checkout@v4
    - uses: actions/setup-python@v5
      with:
        python-version: '3.12'
    - name: pip install
      run: |
        pip install .[actions]
    - name: planemo
      run: |
        ./.planemo.sh ${{ matrix.chunk }} ${{ env.GALAXY_BRANCH }}
    - uses: actions/upload-artifact@v3
      with:
        name: 'Tool test output ${{ matrix.chunk }}'
        path: upload
  planemo_combine_outputs:
    name: Combine chunked test results
    needs: planemo_test
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ['3.8', '3.11']
    steps:
    - uses: actions/download-artifact@v3
      with:
        path: artifacts
    - uses: actions/setup-python@v5
      with:
        python-version: ${{ matrix.python-version }}
    - name: Cache .cache/pip
      uses: actions/cache@v3
      id: cache-pip
      with:
        path: ~/.cache/pip
        key: pip_cache_py_${{ matrix.python-version }}_gxy_${{ env.GALAXY_BRANCH }}
    - name: Combine outputs
      uses: galaxyproject/planemo-ci-action@v1
      id: combine
      with:
        mode: combine
        html-report: true
    - uses: actions/upload-artifact@v4
      with:
        name: 'All tool test results'
        path: upload
    - name: Check outputs
      uses: galaxyproject/planemo-ci-action@v1
      id: check
      with:
        mode: check