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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(add_measurement_shifts)
export(add_noise)
export(bb_mean)
export(bb_var)
export(calc_phi_probs)
export(calc_phi_probs_indiv)
export(calculate_infection_history_statistics)
export(check_attack_rates)
export(check_data)
export(check_inf_hist)
export(check_par_tab)
export(check_proposals)
export(create_age_mask)
export(create_posterior_func)
export(create_prior_lookup)
export(create_prior_mu)
export(create_prior_mu_vac)
export(create_prob_shifts)
export(create_strain_mask)
export(dbb)
export(dbb_prior)
export(density_beta_binom)
export(describe_priors)
export(estimate_mode)
export(euc_distance)
export(expand_summary_infChain)
export(expand_summary_inf_chain)
export(find_bb_2)
export(find_beta_prior_mode)
export(find_beta_prior_with_mean)
export(find_beta_prior_with_mean_var)
export(find_prior_alpha_beta)
export(generate_antigenic_map)
export(generate_antigenic_map_flexible)
export(generate_cumulative_inf_plots)
export(generate_quantiles)
export(generate_start_tab)
export(get_DOBs)
export(get_best_pars)
export(get_index_pars)
export(get_n_alive)
export(get_n_alive_group)
export(get_titre_predictions)
export(get_total_number_infections)
export(hist_rbb)
export(inf_hist_prop_prior_v2_and_v4)
export(inf_hist_prop_prior_v3)
export(inf_hist_swap)
export(inf_hist_swap_phi)
export(inf_mat_prior)
export(inf_mat_prior_cpp)
export(inf_mat_prior_cpp_vector)
export(inf_mat_prior_group_cpp)
export(inf_mat_prior_group_cpp_vector)
export(inf_mat_prior_total_group_cpp)
export(infection_history_prior)
export(infection_history_symmetric)
export(likelihood_func_fast)
export(load_antigenic_map_file)
export(load_infection_chains)
export(load_mcmc_chains)
export(load_start_tab)
export(load_theta_chains)
export(load_titre_dat)
export(logistic_transform)
export(logit_transform)
export(melt_antigenic_coords)
export(mvr_proposal)
export(pad_alphas_and_betas)
export(pad_inf_chain)
export(parallel_tempering)
export(pbb)
export(plot_2d_density)
export(plot_attack_rates)
export(plot_attack_rates_monthly)
export(plot_data)
export(plot_infection_histories)
export(plot_infection_histories_long)
export(plot_infection_history_chains_indiv)
export(plot_infection_history_chains_time)
export(plot_number_infections)
export(plot_posteriors_infhist)
export(plot_posteriors_theta)
export(plot_samples_distances)
export(plot_total_number_infections)
export(prob_mus)
export(prob_mus_vac)
export(prob_shifts)
export(protect)
export(qbb)
export(r_likelihood)
export(rbb)
export(rm_scale)
export(row.match)
export(run_MCMC)
export(run_MCMC_pt)
export(save_infection_history_to_disk)
export(scaletuning)
export(setup_infection_histories)
export(setup_infection_histories_old)
export(setup_infection_histories_titre)
export(setup_infection_histories_total)
export(setup_titredat_for_posterior_func)
export(simulate_attack_rates)
export(simulate_cross_sectional)
export(simulate_data)
export(simulate_group)
export(simulate_individual)
export(simulate_individual_faster)
export(simulate_infection_histories)
export(sum_buckets)
export(sum_infections_by_group)
export(sum_likelihoods)
export(titre_data_fast)
export(titre_dependent_boosting_plot)
export(to.pdf)
export(to.png)
export(to.svg)
export(univ_proposal)
export(wane_function)
importFrom(Rcpp,evalCpp)
useDynLib(serosolver)