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.gitmodules
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[submodule "cgap-pipeline-utils"]
path = cgap-pipeline-utils
url = https://github.com/dbmi-bgm/cgap-pipeline-utils
[submodule "cgap-pipeline-upstream-sentieon"]
path = cgap-pipeline-upstream-sentieon
url = https://github.com/dbmi-bgm/cgap-pipeline-upstream-sentieon
[submodule "cgap-pipeline-SV-germline"]
path = cgap-pipeline-SV-germline
url = https://github.com/dbmi-bgm/cgap-pipeline-SV-germline
[submodule "cgap-pipeline-base"]
path = cgap-pipeline-base
url = https://github.com/dbmi-bgm/cgap-pipeline-base
[submodule "cgap-pipeline-upstream-GATK"]
path = cgap-pipeline-upstream-GATK
url = https://github.com/dbmi-bgm/cgap-pipeline-upstream-GATK
[submodule "cgap-pipeline-SNV-germline"]
path = cgap-pipeline-SNV-germline
url = https://github.com/dbmi-bgm/cgap-pipeline-SNV-germline
[submodule "cgap-pipeline-SNV-somatic"]
path = cgap-pipeline-SNV-somatic
url = https://github.com/dbmi-bgm/cgap-pipeline-SNV-somatic
[submodule "cgap-pipeline-somatic-sentieon"]
path = cgap-pipeline-somatic-sentieon
url = https://github.com/dbmi-bgm/cgap-pipeline-somatic-sentieon
[submodule "cgap-pipeline-SV-somatic"]
path = cgap-pipeline-SV-somatic
url = https://github.com/dbmi-bgm/cgap-pipeline-SV-somatic
[submodule "portal-pipeline-utils"]
path = portal-pipeline-utils
url = https://github.com/dbmi-bgm/portal-pipeline-utils