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scan.ScanLocation
The current pipeline imports element_lab.Location and then uses this as an upstream table for scan.ScanLocation which is described as follows:
element_lab.Location
Location: Reference table for ScanLocation, specifying the brain location where this scan is acquired
This does not match the description of element_lab.Location:
location of animal housing or experimental rigs
I propose modifying scan.ScanLocation to the following:
@schema class ScanLocation(dj.Manual): definition = """ -> Scan --- -> AnatomicalLocation """
And adding the following to workflow_calcium_imaging.pipeline.py or element_calcium_imaging.scan, changing the schema decorator:
workflow_calcium_imaging.pipeline.py
element_calcium_imaging.scan
@lab.schema class AnatomicalLocation(dj.Manual): definition = """ scan_location_id : varchar(16) ---- anatomical_description: varchar(256) """
The text was updated successfully, but these errors were encountered:
element-calcium-imaging
Successfully merging a pull request may close this issue.
The current pipeline imports
element_lab.Location
and then uses this as an upstream table forscan.ScanLocation
which is described as follows:This does not match the description of
element_lab.Location
:I propose modifying
scan.ScanLocation
to the following:And adding the following to
workflow_calcium_imaging.pipeline.py
orelement_calcium_imaging.scan
, changing the schema decorator:The text was updated successfully, but these errors were encountered: