From d95cf53dd71622fefa51f76c82d1d51f25bfbb8b Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Mon, 10 Jul 2023 13:04:31 -0500 Subject: [PATCH 1/5] Fix link --- README.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 13956203..049bea1f 100644 --- a/README.md +++ b/README.md @@ -26,8 +26,9 @@ also provides a tutorial environment and notebooks to learn the pipeline. + We have designed three variations of the pipeline to handle different use cases. Displayed above is the default `imaging` schema. Details on all of the `imaging` -schemas can be found in the [Data Pipeline](https://datajoint.com/docs/elements/ -element-calcium-imaging/latest/pipeline/) documentation page. +schemas can be found in the [Data +Pipeline](https://datajoint.com/docs/elements/element-calcium-imaging/latest/pipeline/) +documentation page. ## Getting Started From 1f29f4a999df644dea3a95b89d8f82e36814d09a Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Thu, 13 Jul 2023 15:43:53 +0000 Subject: [PATCH 2/5] Pin extensions --- .devcontainer/devcontainer.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 835217ee..5a105a6d 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -22,8 +22,8 @@ }, "vscode": { "extensions": [ - "ms-python.python", - "ms-toolsai.jupyter" + "ms-python.python@v2023.8.0", + "ms-toolsai.jupyter@v2023.3.1201040234", ] } } From 5e4fe3ee3a66f8956d476f845a9094ff71e278d0 Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Thu, 13 Jul 2023 16:51:42 -0500 Subject: [PATCH 3/5] Fix version pins --- .devcontainer/devcontainer.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 5a105a6d..4077ba38 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -22,8 +22,8 @@ }, "vscode": { "extensions": [ - "ms-python.python@v2023.8.0", - "ms-toolsai.jupyter@v2023.3.1201040234", + "ms-python.python@2023.8.0", + "ms-toolsai.jupyter@2023.3.1201040234", ] } } From a59017695fc0e116d0ce08712a73832a7a180f02 Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Thu, 13 Jul 2023 16:52:04 -0500 Subject: [PATCH 4/5] Add Python environment variables --- .devcontainer/Dockerfile | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.devcontainer/Dockerfile b/.devcontainer/Dockerfile index 65661ca2..7da05001 100644 --- a/.devcontainer/Dockerfile +++ b/.devcontainer/Dockerfile @@ -1,5 +1,8 @@ FROM python:3.9-slim@sha256:5f0192a4f58a6ce99f732fe05e3b3d00f12ae62e183886bca3ebe3d202686c7f +ENV PATH /usr/local/bin:$PATH +ENV PYTHON_VERSION 3.9.17 + RUN \ adduser --system --disabled-password --shell /bin/bash vscode && \ # install docker From 6f03961ae4f7a54c161fc099363ac9ef7a008020 Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Thu, 13 Jul 2023 16:59:24 -0500 Subject: [PATCH 5/5] Update version and changelog --- CHANGELOG.md | 6 ++++++ element_calcium_imaging/version.py | 2 +- 2 files changed, 7 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 4d172255..4c118e37 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,11 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention. +## [0.7.7] - 2023-07-13 + ++ Add - Environment variables for the Python version in the Dev Container ++ Add - Versions for the VS Code extensions in the Dev Container + ## [0.7.6] - 2023-06-30 + Add - Null value for `package_version` in `imaging*` modules to patch bug @@ -151,6 +156,7 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and + Add - `scan` and `imaging` modules + Add - Readers for `ScanImage`, `ScanBox`, `Suite2p`, `CaImAn` +[0.7.7]: https://github.com/datajoint/element-calcium-imaging/releases/tag/0.7.7 [0.7.6]: https://github.com/datajoint/element-calcium-imaging/releases/tag/0.7.6 [0.7.5]: https://github.com/datajoint/element-calcium-imaging/releases/tag/0.7.5 [0.7.4]: https://github.com/datajoint/element-calcium-imaging/releases/tag/0.7.4 diff --git a/element_calcium_imaging/version.py b/element_calcium_imaging/version.py index 29beb047..da1e782f 100644 --- a/element_calcium_imaging/version.py +++ b/element_calcium_imaging/version.py @@ -1,2 +1,2 @@ """Package metadata.""" -__version__ = "0.7.6" +__version__ = "0.7.7"