diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 3f6a7c5..f3472b9 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -34,8 +34,10 @@ jobs: with: pixi-version: v0.30.0 cache: true - - name: Run Pylint - run: pixi run -e lint pylint + - name: Run Pylint & Mypy + run: | + pixi run -e lint pylint + pixi run -e lint mypy checks: name: Check ${{ matrix.environment }} diff --git a/.gitignore b/.gitignore index fe57def..eccba9d 100644 --- a/.gitignore +++ b/.gitignore @@ -70,6 +70,7 @@ instance/ # Sphinx documentation docs/_build/ +docs/generated/ # PyBuilder .pybuilder/ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index bf0885c..9699e66 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -48,15 +48,6 @@ repos: args: ["--fix", "--show-fixes"] - id: ruff-format - - repo: https://github.com/pre-commit/mirrors-mypy - rev: "v1.11.1" - hooks: - - id: mypy - files: src|tests - args: [] - additional_dependencies: - - pytest - - repo: https://github.com/codespell-project/codespell rev: "v2.3.0" hooks: diff --git a/docs/api-reference.md b/docs/api-reference.md new file mode 100644 index 0000000..9cb4ff0 --- /dev/null +++ b/docs/api-reference.md @@ -0,0 +1,10 @@ +# API Reference + +```{eval-rst} +.. currentmodule:: array_api_extra +.. autosummary:: + :nosignatures: + :toctree: generated + + atleast_nd +``` diff --git a/docs/conf.py b/docs/conf.py index e651fc2..5b2fdf0 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -9,6 +9,7 @@ extensions = [ "myst_parser", "sphinx.ext.autodoc", + "sphinx.ext.autosummary", "sphinx.ext.intersphinx", "sphinx.ext.mathjax", "sphinx.ext.napoleon", diff --git a/docs/index.md b/docs/index.md index a5c0c8a..112716d 100644 --- a/docs/index.md +++ b/docs/index.md @@ -3,15 +3,9 @@ ```{toctree} :maxdepth: 2 :hidden: - +api-reference.md ``` ```{include} ../README.md :start-after: ``` - -## Indices and tables - -- {ref}`genindex` -- {ref}`modindex` -- {ref}`search` diff --git a/pixi.lock b/pixi.lock index 0740381..061b74e 100644 --- a/pixi.lock +++ b/pixi.lock @@ -9,6 +9,7 @@ environments: linux-64: - 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libgcc-ng >=9.4.0 + license: MIT + license_family: MIT + purls: [] + size: 89141 + timestamp: 1641346969816 +- kind: conda + name: yaml + version: 0.2.5 + build: h8ffe710_2 + build_number: 2 + subdir: win-64 + url: https://conda.anaconda.org/conda-forge/win-64/yaml-0.2.5-h8ffe710_2.tar.bz2 + sha256: 4e2246383003acbad9682c7c63178e2e715ad0eb84f03a8df1fbfba455dfedc5 + md5: adbfb9f45d1004a26763652246a33764 + depends: + - vc >=14.1,<15.0a0 + - vs2015_runtime >=14.16.27012 + license: MIT + license_family: MIT + purls: [] + size: 63274 + timestamp: 1641347623319 - kind: conda name: zipp version: 3.20.2 diff --git a/pyproject.toml b/pyproject.toml index 8a28d01..6e6e2f9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -32,11 +32,8 @@ dependencies = [] test = [ "pytest >=6", "pytest-cov >=3", -] -dev = [ - "pytest >=6", - "pytest-cov >=3", - "pylint", + "array-api-strict", + "numpy", ] docs = [ "sphinx>=7.0", @@ -68,29 +65,30 @@ platforms = ["linux-64", "osx-arm64", "win-64"] [tool.pixi.pypi-dependencies] array-api-extra = { path = ".", editable = true } -[tool.pixi.tasks] -pre-commit = { cmd = "pre-commit install && pre-commit run -v --all-files --show-diff-on-failure" } - [tool.pixi.feature.lint.dependencies] +pre-commit = "*" +mypy = "*" pylint = "*" +# import dependencies for mypy: +array-api-strict = "*" +numpy = "*" [tool.pixi.feature.lint.tasks] +pre-commit = { cmd = "pre-commit install && pre-commit run -v --all-files --show-diff-on-failure" } +mypy = { cmd = "mypy", cwd = "." } pylint = { cmd = ["pylint", "array_api_extra"], cwd = "src" } -lint = { depends-on = ["pre-commit", "pylint"] } +lint = { depends-on = ["pre-commit", "pylint", "mypy"] } [tool.pixi.feature.test.dependencies] pytest = ">=6" pytest-cov = ">=3" +array-api-strict = "*" +numpy = "*" [tool.pixi.feature.test.tasks] test = { cmd = "pytest" } test-ci = { cmd = "pytest -ra --cov --cov-report=xml --cov-report=term --durations=20" } -[tool.pixi.feature.dev.dependencies] -pytest = ">=6" -pytest-cov = ">=3" -pylint = "*" - [tool.pixi.feature.docs.dependencies] sphinx = ">=7.0" furo = ">=2023.08.17" @@ -100,6 +98,15 @@ myst_parser = ">=0.13" sphinx_copybutton = "*" sphinx_autodoc_typehints = "*" +[tool.pixi.feature.docs.tasks] +docs = { cmd = ["sphinx-build", ".", "build/"], cwd = "docs" } + +[tool.pixi.feature.dev.dependencies] +ipython = "*" + +[tool.pixi.feature.dev.tasks] +ipython = { cmd = "ipython" } + [tool.pixi.feature.py309.dependencies] python = "~=3.9.0" @@ -109,9 +116,9 @@ python = "~=3.12.0" [tool.pixi.environments] default = { solve-group = "default" } lint = { features = ["lint"], solve-group = "default" } -docs = { features = ["docs"], solve-group = "default" } test = { features = ["test"], solve-group = "default" } -dev = { features = ["dev", "docs"], solve-group = "default" } +docs = { features = ["docs"], solve-group = "default" } +dev = { features = ["lint", "test", "docs", "dev"], solve-group = "default" } ci-py309 = ["py309", "test"] ci-py312 = ["py312", "test"] diff --git a/src/array_api_extra/__init__.py b/src/array_api_extra/__init__.py index 98e0e05..c7344bb 100644 --- a/src/array_api_extra/__init__.py +++ b/src/array_api_extra/__init__.py @@ -1,5 +1,7 @@ from __future__ import annotations +from ._funcs import atleast_nd + __version__ = "0.1.dev0" -__all__ = ["__version__"] +__all__ = ["__version__", "atleast_nd"] diff --git a/src/array_api_extra/_funcs.py b/src/array_api_extra/_funcs.py new file mode 100644 index 0000000..98c175b --- /dev/null +++ b/src/array_api_extra/_funcs.py @@ -0,0 +1,48 @@ +from __future__ import annotations + +from typing import TYPE_CHECKING + +if TYPE_CHECKING: + from ._typing import Array, ModuleType + +__all__ = ["atleast_nd"] + + +def atleast_nd(x: Array, *, ndim: int, xp: ModuleType) -> Array: + """ + Recursively expand the dimension of an array to at least `ndim`. + + Parameters + ---------- + x : array + ndim : int + The minimum number of dimensions for the result. + xp : array_namespace + The standard-compatible namespace for `x`. + + Returns + ------- + res : array + An array with ``res.ndim`` >= `ndim`. + If ``x.ndim`` >= `ndim`, `x` is returned. + If ``x.ndim`` < `ndim`, `x` is expanded by prepending new axes + until ``res.ndim`` equals `ndim`. + + Examples + -------- + >>> import array_api_strict as xp + >>> import array_api_extra as xpx + >>> x = xp.asarray([1]) + >>> xpx.atleast_nd(x, ndim=3, xp=xp) + Array([[[1]]], dtype=array_api_strict.int64) + + >>> x = xp.asarray([[[1, 2], + ... [3, 4]]]) + >>> xpx.atleast_nd(x, ndim=1, xp=xp) is x + True + + """ + if x.ndim < ndim: + x = xp.expand_dims(x, axis=0) + x = atleast_nd(x, ndim=ndim, xp=xp) + return x diff --git a/src/array_api_extra/_typing.py b/src/array_api_extra/_typing.py new file mode 100644 index 0000000..8fa049b --- /dev/null +++ b/src/array_api_extra/_typing.py @@ -0,0 +1,9 @@ +from __future__ import annotations + +from types import ModuleType +from typing import TYPE_CHECKING, Any + +if TYPE_CHECKING: + Array = Any # To be changed to a Protocol later (see array-api#589) + +__all__ = ["Array", "ModuleType"] diff --git a/tests/test_funcs.py b/tests/test_funcs.py new file mode 100644 index 0000000..e3412a1 --- /dev/null +++ b/tests/test_funcs.py @@ -0,0 +1,69 @@ +from __future__ import annotations + +# array-api-strict#6 +import array_api_strict as xp # type: ignore[import-untyped] +from numpy.testing import assert_array_equal + +from array_api_extra import atleast_nd + + +class TestAtLeastND: + def test_0D(self): + x = xp.asarray(1) + + y = atleast_nd(x, ndim=0, xp=xp) + assert_array_equal(y, x) + + y = atleast_nd(x, ndim=1, xp=xp) + assert_array_equal(y, xp.ones((1,))) + + y = atleast_nd(x, ndim=5, xp=xp) + assert_array_equal(y, xp.ones((1, 1, 1, 1, 1))) + + def test_1D(self): + x = xp.asarray([0, 1]) + + y = atleast_nd(x, ndim=0, xp=xp) + assert_array_equal(y, x) + + y = atleast_nd(x, ndim=1, xp=xp) + assert_array_equal(y, x) + + y = atleast_nd(x, ndim=2, xp=xp) + assert_array_equal(y, xp.asarray([[0, 1]])) + + y = atleast_nd(x, ndim=5, xp=xp) + assert_array_equal(y, xp.reshape(xp.arange(2), (1, 1, 1, 1, 2))) + + def test_2D(self): + x = xp.asarray([[3]]) + + y = atleast_nd(x, ndim=0, xp=xp) + assert_array_equal(y, x) + + y = atleast_nd(x, ndim=2, xp=xp) + assert_array_equal(y, x) + + y = atleast_nd(x, ndim=3, xp=xp) + assert_array_equal(y, 3 * xp.ones((1, 1, 1))) + + y = atleast_nd(x, ndim=5, xp=xp) + assert_array_equal(y, 3 * xp.ones((1, 1, 1, 1, 1))) + + def test_5D(self): + x = xp.ones((1, 1, 1, 1, 1)) + + y = atleast_nd(x, ndim=0, xp=xp) + assert_array_equal(y, x) + + y = atleast_nd(x, ndim=4, xp=xp) + assert_array_equal(y, x) + + y = atleast_nd(x, ndim=5, xp=xp) + assert_array_equal(y, x) + + y = atleast_nd(x, ndim=6, xp=xp) + assert_array_equal(y, xp.ones((1, 1, 1, 1, 1, 1))) + + y = atleast_nd(x, ndim=9, xp=xp) + assert_array_equal(y, xp.ones((1, 1, 1, 1, 1, 1, 1, 1, 1)))