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environment.yml
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environment.yml
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name: biochem
channels:
- bioconda/label/cf201901
- biocore
- kantorlab
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- _r-mutex=1.0.1=anacondar_1
- aiohttp=3.9.1=py312h98912ed_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- amply=0.1.6=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- argcomplete=3.2.1=pyhd8ed1ab_0
- argparse-dataclass=2.0.0=pyhd8ed1ab_0
- aria2=1.37.0=h347180d_1
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=23.2.0=pyh71513ae_0
- bash=5.2.15=h7f99829_1
- binutils_impl_linux-64=2.40=hf600244_0
- biopython=1.78=py312h5eee18b_0
- blas=1.0=mkl
- blastdb=2.7.1=0
- blastn=2.7.1=0
- boto=2.49.0=py_0
- brotli-python=1.1.0=py312h30efb56_1
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.24.0=hd590300_0
- ca-certificates=2024.2.2=hbcca054_0
- cachetools=5.3.2=pyhd8ed1ab_0
- cairo=1.18.0=h3faef2a_0
- certifi=2024.2.2=pyhd8ed1ab_0
- cffi=1.16.0=py312hf06ca03_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- coin-or-cbc=2.10.10=h9002f0b_0
- coin-or-cgl=0.60.5=h3cb4718_0
- coin-or-clp=1.17.7=h4e0f3ec_0
- coin-or-osi=0.108.7=h3cb4718_0
- coin-or-utils=2.11.6=h4e0f3ec_0
- coincbc=2.10.10=0_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- conda-inject=1.3.1=pyhd8ed1ab_0
- configargparse=1.7=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- cpc2=1.0.1=hdfd78af_0
- crcmod=1.7=py312h98912ed_1010
- cryptography=41.0.7=py312h4742d6a_1
- curl=8.5.0=hca28451_0
- cython=3.0.6=py312h30efb56_0
- datrie=0.8.2=py312h98912ed_7
- docutils=0.20.1=py312h7900ff3_3
- dpath=2.1.6=pyha770c72_0
- easel=0.49=h031d066_0
- eido=0.2.2=pyhd8ed1ab_0
- exceptiongroup=1.2.0=pyhd8ed1ab_2
- expat=2.5.0=h6a678d5_0
- fasteners=0.17.3=pyhd8ed1ab_0
- fastx_toolkit=0.0.14=0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_1
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- frozenlist=1.4.1=py312h98912ed_0
- gawk=5.3.0=ha916aea_0
- gcc_impl_linux-64=13.2.0=h338b0a0_5
- gcs-oauth2-boto-plugin=3.0=pyhd8ed1ab_0
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=13.2.0=h76e1118_5
- giflib=5.2.1=h0b41bf4_3
- gitdb=4.0.11=pyhd8ed1ab_0
- gitpython=3.1.41=pyhd8ed1ab_0
- gmp=6.3.0=h59595ed_0
- gnuplot=5.0.3=4
- google-apitools=0.5.32=pyhd8ed1ab_0
- google-auth=2.26.2=pyhca7485f_0
- google-reauth=0.1.1=pyhd3deb0d_0
- graphite2=1.3.13=h58526e2_1001
- gsutil=5.27=pyhd8ed1ab_0
- gxx_impl_linux-64=13.2.0=h338b0a0_5
- harfbuzz=8.3.0=h3d44ed6_0
- hmmer=3.1b2=0
- httplib2=0.20.4=pyhd8ed1ab_0
- humanfriendly=10.0=pyhd8ed1ab_6
- icu=73.2=h59595ed_0
- idna=3.6=pyhd8ed1ab_0
- immutables=0.20=py312h98912ed_1
- importlib_resources=6.1.1=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- intarna=1.2.5=2
- intel-openmp=2023.1.0=hdb19cb5_46306
- jinja2=3.1.3=pyhd8ed1ab_0
- jsonschema=4.21.1=pyhd8ed1ab_0
- jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
- jupyter_core=5.7.1=py312h7900ff3_0
- k8=0.2.5=hdcf5f25_4
- kernel-headers_linux-64=2.6.32=he073ed8_17
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.2=h659d440_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=1_h86c2bf4_netlib
- libcurl=8.5.0=hca28451_0
- libdeflate=1.19=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.4=h6a678d5_0
- libgcc=7.2.0=h69d50b8_2
- libgcc-devel_linux-64=13.2.0=ha9c7c90_105
- libgcc-ng=13.2.0=h807b86a_3
- libgd=2.3.3=h119a65a_9
- libgfortran-ng=13.2.0=h69a702a_3
- libgfortran5=13.2.0=ha4646dd_3
- libglib=2.78.4=h783c2da_0
- libgomp=13.2.0=h807b86a_3
- libgtextutils=0.7=hdbdd923_11
- libiconv=1.17=hd590300_2
- libidn2=2.3.4=h166bdaf_0
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=5_h92ddd45_netlib
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.26=pthreads_h413a1c8_0
- libpng=1.6.39=h753d276_0
- libsanitizer=13.2.0=h7e041cc_5
- libsqlite=3.44.2=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-devel_linux-64=13.2.0=ha9c7c90_105
- libstdcxx-ng=13.2.0=h7e041cc_3
- libsvm=3.16=2
- libtiff=4.6.0=ha9c0a0a_2
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp=1.3.2=h658648e_1
- libwebp-base=1.3.2=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libxml2=2.12.3=h232c23b_0
- libzlib=1.2.13=hd590300_5
- llvm-openmp=17.0.5=h4dfa4b3_0
- logmuse=0.2.6=pyh8c360ce_0
- make=4.3=hd18ef5c_1
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.4=py312h98912ed_0
- mdurl=0.1.2=pyhd8ed1ab_0
- minimap2=2.26=he4a0461_2
- mkl=2023.1.0=h213fc3f_46344
- mkl-service=2.4.0=py312h5eee18b_1
- mkl_fft=1.3.8=py312h5eee18b_0
- mkl_random=1.2.4=py312hdb19cb5_0
- mmseqs2=15.6f452=pl5321h6a68c12_0
- monotonic=1.5=py_0
- mpfr=4.2.1=h9458935_0
- multidict=6.0.4=py312h98912ed_1
- mysql-connector-c=6.1.6=2
- nbformat=5.9.2=pyhd8ed1ab_0
- ncurses=6.4=h6a678d5_0
- nose=1.3.7=py_1006
- numpy=1.26.3=py312hc5e2394_0
- numpy-base=1.26.3=py312h0da6c21_0
- oauth2client=4.1.3=py_0
- openssl=3.2.1=hd590300_0
- packaging=23.2=pyhd8ed1ab_0
- pandas=2.2.0=py312hfb8ada1_0
- pango=1.50.14=ha41ecd1_2
- pcre2=10.42=hcad00b1_0
- peppy=0.40.1=pyhd8ed1ab_0
- perl=5.32.1=4_hd590300_perl5
- pip=23.2.1=py312h06a4308_0
- pixman=0.43.2=h59595ed_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- plac=1.4.2=pyhd8ed1ab_0
- platformdirs=4.1.0=pyhd8ed1ab_0
- pluggy=1.3.0=pyhd8ed1ab_0
- psutil=5.9.8=py312h98912ed_0
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.8.0=py312h7900ff3_0
- pyasn1=0.5.1=pyhd8ed1ab_0
- pyasn1-modules=0.3.0=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.17.2=pyhd8ed1ab_0
- pyopenssl=23.3.0=pyhd8ed1ab_0
- pyparsing=3.1.1=pyhd8ed1ab_0
- pysocks=1.7.1=pyha2e5f31_6
- pytest=7.4.4=pyhd8ed1ab_0
- python=3.12.0=hab00c5b_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.19.1=pyhd8ed1ab_0
- python-tzdata=2023.4=pyhd8ed1ab_0
- python_abi=3.12=4_cp312
- pytz=2023.3.post1=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=6.0.1=py312h98912ed_1
- r-base=4.3.2=hb8ee39d_2
- readline=8.2=h5eee18b_0
- referencing=0.32.1=pyhd8ed1ab_0
- requests=2.31.0=pyhd8ed1ab_0
- reretry=0.11.8=pyhd8ed1ab_0
- retry_decorator=1.1.1=pyh9f0ad1d_0
- rich=13.7.0=pyhd8ed1ab_0
- rnacode=0.3=hec16e2b_3
- rpds-py=0.17.1=py312h4b3b743_0
- rsa=4.9=pyhd8ed1ab_0
- rscape=1.4.0=hdbdd923_4
- sed=4.8=he412f7d_0
- setuptools=68.0.0=py312h06a4308_0
- six=1.16.0=pyhd3eb1b0_1
- slack-sdk=3.26.2=pyha770c72_0
- slack_sdk=3.26.2=hd8ed1ab_0
- smart_open=6.4.0=pyhd8ed1ab_0
- smmap=5.0.0=pyhd8ed1ab_0
- snakemake=8.2.1=hdfd78af_0
- snakemake-interface-common=1.15.1=pyhdfd78af_0
- snakemake-interface-executor-plugins=8.2.0=pyhdfd78af_0
- snakemake-interface-storage-plugins=3.0.0=pyhdfd78af_0
- snakemake-minimal=8.2.1=pyhdfd78af_0
- socksipy-branch=1.01=pyh9f0ad1d_0
- sqlite=3.41.2=h5eee18b_0
- stopit=1.1.2=py_0
- sysroot_linux-64=2.12=he073ed8_17
- tabulate=0.9.0=pyhd8ed1ab_1
- tbb=2021.8.0=hdb19cb5_0
- throttler=1.2.2=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- tktable=2.10=h0c5db8f_5
- tomli=2.0.1=pyhd8ed1ab_0
- toposort=1.10=pyhd8ed1ab_0
- traitlets=5.14.1=pyhd8ed1ab_0
- typing_extensions=4.9.0=pyha770c72_0
- tzdata=2023c=h04d1e81_0
- ubiquerg=0.6.3=pyhd8ed1ab_0
- ucsc-bigbedtobed=357=0
- ucsc-bigwigsummary=448=h2a80c09_0
- urllib3=2.1.0=pyhd8ed1ab_0
- vcftools=0.1.16=h9a82719_5
- veracitools=0.1.3=py_0
- viennarna=2.3.3=hfc679d8_2
- wget=1.20.3=ha35d2d1_1
- wheel=0.41.2=py312h06a4308_0
- wrapt=1.16.0=py312h98912ed_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.7=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.11=hd590300_0
- xorg-libxt=1.3.0=hd590300_1
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.4.2=h5eee18b_0
- yaml=0.2.5=h7f98852_2
- yarl=1.9.4=py312h98912ed_0
- yte=1.5.4=pyha770c72_0
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0
prefix: /Volumes/archive/userdata/student_users/danielaschiavinato/.conda/envs/biochem