Repo contains code for algorithms which calculate the spatiotemporal propagation of activity (avalanches) and measures critical statistics.
- the processing of avalanche dynamics
- the calculation of criticality statistics
- Modules contain functions for avalanche and criticality analyses
- Accompanying ipynotebooks demonstrate how to use the modules
'admin_functions.py' - useful administrative functions useful
'IS.py' - module for Bayesian importance sampling approach for loglikelihood ratio testing of power law vs lognormal distribution
'criticality.py' - module for the estimation of avalanches and calculation of critical statistics
'trace_analyse.py' - module containing classes and functions for the analysis of single cell and population firing statistics
'av_dev.ipynb' - criticality over development
'criticality_stats.ipynb' - critical statistics in spontaneous image data and null models
'criticality_seizure.ipynb' - criticality during PTZ induced seizure