3.abundance_sort

#!/bin/bash

source globals

echo sorting by abundance and removing singletons
echo $USEARCH -sortbysize data/combined.filtered.dereplicated.fasta -output data/combined.filtered.dereplicated.sorted.fasta -minsize 2
$USEARCH -sortbysize data/combined.filtered.dereplicated.fasta -output data/combined.filtered.dereplicated.sorted.fasta -minsize 2 >& $0.log