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KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(68, 8 countries) #2832

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Over-There-Is opened this issue Nov 29, 2024 · 4 comments

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@Over-There-Is
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Transferred from sars-cov-2-variants/lineage-proposals#2176

KP.3.1.1> C21859T> A20712G> T29633C(Orf10:Y26H)> A6590G(Orf1a:K2109E)> G22567C(S:L335F)
Query: C12616, C21859, G22567C (edited based on @xz-keg 's query)
Query for sequences without C21859T: A6590G, G22567C, T29633C, -C21859T (2)

Earliest sequence: 07-18 British Columbia, Canada EPI_ISL_19318265
Latest sequence: 11-05 Sydney, New South Wales, Australia EPI_ISL_19558599
Regions detected: US 19, NZ 13, UK 12(1 not on GISAID), Australia 7, Canada 3, Germany 1, Sweden 1

6/153=3.9% in latest batch from New Zealand.

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/hgPhyloPlace/subtreeAuspice1_genome_test_1e0fc_9eeee0.json?c=country&label=id:node_7294255
image

Sequences:
EPI_ISL_19318265, EPI_ISL_19337433, EPI_ISL_19343100,
EPI_ISL_19346273, EPI_ISL_19347209, EPI_ISL_19379314,
EPI_ISL_19391306, EPI_ISL_19408813, EPI_ISL_19412394,
EPI_ISL_19415571, EPI_ISL_19429202, EPI_ISL_19440289,
EPI_ISL_19440337, EPI_ISL_19440380, EPI_ISL_19447787,
EPI_ISL_19447819, EPI_ISL_19447851, EPI_ISL_19464660,
EPI_ISL_19479658, EPI_ISL_19485911, EPI_ISL_19490683,
EPI_ISL_19490689, EPI_ISL_19490693, EPI_ISL_19494045,
EPI_ISL_19494065, EPI_ISL_19494141, EPI_ISL_19496882,
EPI_ISL_19499583, EPI_ISL_19505764-19505765, EPI_ISL_19506467,
EPI_ISL_19511907, EPI_ISL_19514514, EPI_ISL_19515583,
EPI_ISL_19515595, EPI_ISL_19515652, EPI_ISL_19515654,
EPI_ISL_19515658, EPI_ISL_19515662, EPI_ISL_19519093,
EPI_ISL_19524935, EPI_ISL_19526767, EPI_ISL_19530351,
EPI_ISL_19531650, EPI_ISL_19537387, EPI_ISL_19545664,
EPI_ISL_19545750-19545752, EPI_ISL_19545761, EPI_ISL_19545763,
EPI_ISL_19558598-19558599, EPI_ISL_19562614, EPI_ISL_19565893,
EPI_ISL_19572367, OZ202189.1

@Over-There-Is Over-There-Is changed the title KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(57, 7 countries, 3.9% in NZ) KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(58, 7 countries, 3.9% in NZ) Dec 12, 2024
@Over-There-Is Over-There-Is changed the title KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(58, 7 countries, 3.9% in NZ) KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(59, 7 countries, 3.9% in NZ) Dec 14, 2024
@Over-There-Is Over-There-Is changed the title KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(59, 7 countries, 3.9% in NZ) KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(65, 7 countries, 3.9% in NZ) Dec 18, 2024
@Over-There-Is Over-There-Is changed the title KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(65, 7 countries, 3.9% in NZ) KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(65, 7 countries) Dec 21, 2024
@Over-There-Is
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Not detected in NZ's latest batch.

@FedeGueli
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Not detected in NZ's latest batch.

Yeah but still around recently

@Over-There-Is Over-There-Is changed the title KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(65, 7 countries) KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(66, 7 countries) Dec 27, 2024
@FedeGueli
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Dying off likely

@Over-There-Is Over-There-Is changed the title KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(66, 7 countries) KP.3.1.1 subbranch with S:L335F, Orf1a:K2109E and Orf10:Y26H(68, 8 countries) Jan 18, 2025
@Over-There-Is
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Poland

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