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KP.3.1.1+S:R190S(67 seqs, >10 places) #2815

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xz-keg opened this issue Oct 24, 2024 · 8 comments
Open

KP.3.1.1+S:R190S(67 seqs, >10 places) #2815

xz-keg opened this issue Oct 24, 2024 · 8 comments

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@xz-keg
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xz-keg commented Oct 24, 2024

From branch 31 of sars-cov-2-variants/lineage-proposals#1771
This S:R190S becomes convergent in KP.3.1.1, too.

KP.3.1.1+G22132T(S:R190S)

GISAID query: C12616T,A13121T,G22132T,-29503,-9803,-5297,-6312,-9748,-10681,-6536,-C25163A,-T7380C,-25617,-G2890A,-14724(
may include more -s as convergence going on)
Some seqs are placed on the artefact S31F branch, or flip-flop reversive branches so I don't exclude them. They are likely to belong to the main branch.

No. of seqs: 26(Canada 3 France 1 Greece 1 Italy 1 Netherlands 2 Spain 2 Sweden 3 USA 12(TX,UT,VA,CO,DE,OH,NC,NY) Ukraine 1)

First: EPI_ISL_19430925, Greece, 2024-7-23
Latest: EPI_ISL_19496033, Spain, 2024-10-12
usher
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@FedeGueli
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Query updated while trnasferred here : C12616T,A13121T,G22132T,-29503,-9803,-5297,-6312,-9748,-10681,-6536,-C25163A,-T7380C ,-25617,-G2890A,-14724 gives 27

@xz-keg xz-keg changed the title KP.3.1.1+S:R190S(26 seqs, >10 places) KP.3.1.1+S:R190S(30 seqs, >10 places) Nov 2, 2024
@xz-keg
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xz-keg commented Nov 7, 2024

32, Portugal

@xz-keg xz-keg changed the title KP.3.1.1+S:R190S(30 seqs, >10 places) KP.3.1.1+S:R190S(32 seqs, >10 places) Nov 7, 2024
@xz-keg xz-keg changed the title KP.3.1.1+S:R190S(32 seqs, >10 places) KP.3.1.1+S:R190S(37 seqs, >10 places) Nov 12, 2024
@xz-keg
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xz-keg commented Nov 18, 2024

40, Germany

@xz-keg xz-keg changed the title KP.3.1.1+S:R190S(37 seqs, >10 places) KP.3.1.1+S:R190S(40 seqs, >10 places) Nov 18, 2024
@FedeGueli
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43

@DailyCovidCases
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Now 54 seqs, please fix the title @xz-keg

@FedeGueli
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46 with very little spread in November (note that unfortunately Ohio doesnt upload correctly collection dates so maybe some from there could be from november)

@xz-keg xz-keg changed the title KP.3.1.1+S:R190S(40 seqs, >10 places) KP.3.1.1+S:R190S(48 seqs, >10 places) Dec 5, 2024
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xz-keg commented Dec 10, 2024

52, Poland, UK, Spain

@xz-keg xz-keg changed the title KP.3.1.1+S:R190S(48 seqs, >10 places) KP.3.1.1+S:R190S(52 seqs, >10 places) Dec 10, 2024
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xz-keg commented Dec 17, 2024

+2 Hong Kong

@xz-keg xz-keg changed the title KP.3.1.1+S:R190S(52 seqs, >10 places) KP.3.1.1+S:R190S(54 seqs, >10 places) Dec 17, 2024
@xz-keg xz-keg changed the title KP.3.1.1+S:R190S(54 seqs, >10 places) KP.3.1.1+S:R190S(63 seqs, >10 places) Dec 27, 2024
@xz-keg xz-keg changed the title KP.3.1.1+S:R190S(63 seqs, >10 places) KP.3.1.1+S:R190S(67 seqs, >10 places) Jan 2, 2025
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