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AttributeError: module 'arviz' has no attribute 'geweke' for Python 3.9.7 #77

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fickse opened this issue Nov 11, 2021 · 2 comments
Open

AttributeError: module 'arviz' has no attribute 'geweke' for Python 3.9.7 #77

fickse opened this issue Nov 11, 2021 · 2 comments
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@fickse
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fickse commented Nov 11, 2021

Issue:
AttributeError: module 'arviz' has no attribute 'geweke' for Python 3.9.7

Similar to https://discourse.pymc.io/t/attributeerror-module-arviz-has-no-attribute-geweke/6818
But with different different python version.

Steps to reproduce:

conda create -n pymc -c conda-forge python=3.9
conda activate pymc
conda install -c conda-forge -y pymc3
python -c "import pymc3"

Environment (conda list): 
$ conda list
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       1_gnu    conda-forge
arviz                     0.11.4             pyhd8ed1ab_0    conda-forge
binutils_impl_linux-64    2.36.1               h193b22a_2    conda-forge
binutils_linux-64         2.36                hf3e587d_33    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
ca-certificates           2021.10.8            ha878542_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
certifi                   2021.10.8        py39hf3d152e_1    conda-forge
cftime                    1.5.1.1          py39hce5d2b2_1    conda-forge
colorama                  0.4.4              pyh9f0ad1d_0    conda-forge
curl                      7.80.0               h494985f_0    conda-forge
cycler                    0.11.0             pyhd8ed1ab_0    conda-forge
fastprogress              1.0.0                      py_0    conda-forge
freetype                  2.10.4               h0708190_1    conda-forge
gcc_impl_linux-64         7.5.0               hda68d29_13    conda-forge
gcc_linux-64              7.5.0               h47867f9_33    conda-forge
gxx_impl_linux-64         7.5.0               h64c220c_13    conda-forge
gxx_linux-64              7.5.0               h555fc39_33    conda-forge
h5py                      3.4.0           nompi_py39h7e08c79_101    conda-forge
hdf4                      4.2.15               h10796ff_3    conda-forge
hdf5                      1.12.1          nompi_h7f166f4_101    conda-forge
importlib-metadata        4.8.2            py39hf3d152e_0    conda-forge
importlib_metadata        4.8.2                hd8ed1ab_0    conda-forge
jbig                      2.1               h7f98852_2003    conda-forge
jpeg                      9d                   h36c2ea0_0    conda-forge
kernel-headers_linux-64   2.6.32              he073ed8_15    conda-forge
kiwisolver                1.3.2            py39h1a9c180_1    conda-forge
krb5                      1.19.2               h48eae69_3    conda-forge
lcms2                     2.12                 hddcbb42_0    conda-forge
ld_impl_linux-64          2.36.1               hea4e1c9_2    conda-forge
lerc                      3.0                  h9c3ff4c_0    conda-forge
libblas                   3.9.0           12_linux64_openblas    conda-forge
libcblas                  3.9.0           12_linux64_openblas    conda-forge
libcurl                   7.80.0               h494985f_0    conda-forge
libdeflate                1.8                  h7f98852_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 11.2.0              h1d223b6_11    conda-forge
libgfortran-ng            11.2.0              h69a702a_11    conda-forge
libgfortran5              11.2.0              h5c6108e_11    conda-forge
libgomp                   11.2.0              h1d223b6_11    conda-forge
libgpuarray               0.7.6             h7f98852_1003    conda-forge
liblapack                 3.9.0           12_linux64_openblas    conda-forge
libnetcdf                 4.8.1           nompi_hb3fd0d9_101    conda-forge
libnghttp2                1.43.0               ha19adfc_1    conda-forge
libopenblas               0.3.18          pthreads_h8fe5266_0    conda-forge
libpng                    1.6.37               h21135ba_2    conda-forge
libssh2                   1.10.0               ha35d2d1_2    conda-forge
libstdcxx-ng              11.2.0              he4da1e4_11    conda-forge
libtiff                   4.3.0                h6f004c6_2    conda-forge
libwebp-base              1.2.1                h7f98852_0    conda-forge
libzip                    1.8.0                h1c5bbd1_1    conda-forge
libzlib                   1.2.11            h36c2ea0_1013    conda-forge
lz4-c                     1.9.3                h9c3ff4c_1    conda-forge
mako                      1.1.5              pyhd8ed1ab_0    conda-forge
markupsafe                2.0.1            py39h3811e60_1    conda-forge
matplotlib-base           3.4.3            py39h2fa2bec_1    conda-forge
ncurses                   6.2                  h58526e2_4    conda-forge
netcdf4                   1.5.8           nompi_py39h64b754b_101    conda-forge
numpy                     1.21.4           py39hdbf815f_0    conda-forge
olefile                   0.46               pyh9f0ad1d_1    conda-forge
openjpeg                  2.4.0                hb52868f_1    conda-forge
openssl                   3.0.0                h7f98852_2    conda-forge
packaging                 21.2               pyhd8ed1ab_1    conda-forge
pandas                    1.3.4            py39hde0f152_1    conda-forge
patsy                     0.5.2              pyhd8ed1ab_0    conda-forge
pillow                    8.4.0            py39ha612740_0    conda-forge
pip                       21.3.1             pyhd8ed1ab_0    conda-forge
pygpu                     0.7.6           py39hce5d2b2_1003    conda-forge
pymc3                     3.9.3                      py_1    conda-forge
pyparsing                 2.4.7              pyhd8ed1ab_1    conda-forge
python                    3.9.7           hf930737_3_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python_abi                3.9                      2_cp39    conda-forge
pytz                      2021.3             pyhd8ed1ab_0    conda-forge
readline                  8.1                  h46c0cb4_0    conda-forge
scipy                     1.7.2            py39hee8e79c_0    conda-forge
setuptools                58.5.3           py39hf3d152e_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sqlite                    3.36.0               h9cd32fc_2    conda-forge
sysroot_linux-64          2.12                he073ed8_15    conda-forge
theano                    1.0.5            py39h41458e0_1    conda-forge
tk                        8.6.11               h27826a3_1    conda-forge
tornado                   6.1              py39h3811e60_2    conda-forge
tqdm                      4.62.3             pyhd8ed1ab_0    conda-forge
typing-extensions         3.10.0.2             hd8ed1ab_0    conda-forge
typing_extensions         3.10.0.2           pyha770c72_0    conda-forge
tzdata                    2021e                he74cb21_0    conda-forge
wheel                     0.37.0             pyhd8ed1ab_1    conda-forge
xarray                    0.20.1             pyhd8ed1ab_0    conda-forge
xz                        5.2.5                h516909a_1    conda-forge
zipp                      3.6.0              pyhd8ed1ab_0    conda-forge
zlib                      1.2.11            h36c2ea0_1013    conda-forge
zstd                      1.5.0                ha95c52a_0    conda-forge

Details about conda and system ( conda info ): 
     active environment : pymc
    active env location : /home/steve/tools/miniconda3/envs/pymc
            shell level : 2
       user config file : /home/steve/.condarc
 populated config files : /home/steve/.condarc
          conda version : 4.9.2
    conda-build version : not installed
         python version : 3.7.7.final.0
       virtual packages : __glibc=2.31=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /home/steve/tools/miniconda3  (writable)
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/steve/tools/miniconda3/pkgs
                          /home/steve/.conda/pkgs
       envs directories : /home/steve/tools/miniconda3/envs
                          /home/steve/.conda/envs
               platform : linux-64
             user-agent : conda/4.9.2 requests/2.24.0 CPython/3.7.7 Linux/5.11.0-38-generic ubuntu/20.04.2 glibc/2.31
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False
@michaelosthege
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You ended up with a really old PyMC version there. But it should be fine to pip install "pymc3==3.11.4" on top.

This is a frequently observed problem with conda channels, I can't find a corresponding ticket though.

@maresb
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maresb commented Nov 11, 2021

I recently learned that the proper way to fix this on conda-forge is to make a repodata patch. That way we can retroactively fix the broken version pins.

It's conda's job to handle these dependencices correctly. Until it does, the feedstock is broken IMHO.

@jdblischak jdblischak mentioned this issue May 9, 2022
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@michaelosthege @fickse @maresb