-
Notifications
You must be signed in to change notification settings - Fork 11
/
setup.py
181 lines (148 loc) · 7.72 KB
/
setup.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
from distutils.core import setup
from Cython.Build import cythonize
from distutils.extension import Extension
import numpy as np
import sys
import platform
import subprocess as sp
import os.path
import string
# Now get include paths from relevant python modules
# include_path = [mpi4py.get_include()]
include_path = [np.get_include()]
# include_path += ['./Csrc']
if sys.platform == 'darwin':
#Compile flags for MacOSX
library_dirs = []
libraries = []
extensions = []
extra_compile_args = []
extra_compile_args += ['-O3', '-march=native', '-Wno-unused', '-Wno-#warnings','-fPIC']
# extra_objects=['./RRTMG/rrtmg_build/rrtmg_combined.o']
extra_objects = []
netcdf_include = '/opt/local/include'
netcdf_lib = '/opt/local/lib'
f_compiler = 'gfortran'
elif 'eu' in platform.node():
#Compile flags for euler @ ETHZ
library_dirs = ['/cluster/apps/openmpi/1.6.5/x86_64/gcc_4.8.2/lib/']
libraries = []
libraries.append('mpi')
libraries.append('gfortran')
extensions = []
extra_compile_args=[]
extra_compile_args+=['-std=c99', '-O3', '-march=native', '-Wno-unused',
'-Wno-#warnings', '-Wno-maybe-uninitialized', '-Wno-cpp', '-Wno-array-bounds','-fPIC']
# extra_objects=['./RRTMG/rrtmg_build/rrtmg_combined.o']
extra_objects = []
netcdf_include = '/cluster/apps/netcdf/4.3.1/x86_64/gcc_4.8.2/openmpi_1.6.5/include'
netcdf_lib = '/cluster/apps/netcdf/4.3.1/x86_64/gcc_4.8.2/openmpi_1.6.5/lib'
f_compiler = 'gfortran'
elif 'sampo' in platform.node():
#Compile flags for sampo @ Caltech
library_dirs = string.split(os.environ['LD_LIBRARY_PATH'],':')
libraries = []
libraries.append('mpi')
libraries.append('gfortran')
extensions = []
extra_compile_args=[]
# TODO -march=native
extra_compile_args+=['-std=c99', '-O3', '-Wno-unused',
'-Wno-#warnings', '-Wno-maybe-uninitialized', '-Wno-cpp', '-Wno-array-bounds','-fPIC']
netcdf_include = '/export/data1/ajaruga/clones/netcdf-4.4/localnetcdf/include'
netcdf_lib = '/export/data1/ajaruga/clones/netcdf-4.4/localnetcdf/lib'
f_compiler = 'gfortran'
else:
print('Unknown system platform: ' + sys.platform + 'or unknown system name: ' + platform.node())
sys.exit()
_ext = Extension('thermodynamic_functions', ['thermodynamic_functions.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('microphysics_functions', ['microphysics_functions.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('turbulence_functions', ['turbulence_functions.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('utility_functions', ['utility_functions.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('Grid', ['Grid.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('Simulation1d', ['Simulation1d.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('Variables', ['Variables.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('TimeStepping', ['TimeStepping.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('NetCDFIO', ['NetCDFIO.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('EDMF_Updrafts', ['EDMF_Updrafts.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('EDMF_Environment', ['EDMF_Environment.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('Turbulence', ['Turbulence.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('Turbulence_PrognosticTKE', ['Turbulence_PrognosticTKE.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('ReferenceState', ['ReferenceState.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('Forcing', ['Forcing.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('forcing_functions', ['forcing_functions.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('Surface', ['Surface.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('surface_functions', ['surface_functions.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
_ext = Extension('Cases', ['Cases.pyx'], include_dirs=include_path,
extra_compile_args=extra_compile_args, libraries=libraries, library_dirs=library_dirs,
runtime_library_dirs=library_dirs)
extensions.append(_ext)
#Build RRTMG
#
# rrtmg_compiled = os.path.exists('./RRTMG/rrtmg_build/rrtmg_combined.o')
# if not rrtmg_compiled:
# run_str = 'cd ./RRTMG; '
# run_str += ('FC='+ f_compiler + ' LIB_NETCDF=' + netcdf_lib + ' INC_NETCDF='+
# netcdf_include + ' csh ./compile_RRTMG_combined.csh')
# print run_str
# sp.call([run_str], shell=True)
# else:
# print("RRTMG Seems to be already compiled.")
#
setup(
ext_modules=cythonize(extensions, verbose=1, include_path=include_path)
)