DESCRIPTION

Package: llfsRnaseq
Title: A collection of scripts and documentation related to processing LLFS RNAseq data
Version: 1.0.0
Authors@R: 
    person("Chase", "Mateusiak", , "chasem@wustl.edu", role = c("aut", "cre"),
           comment = c(ORCID = "https://orcid.org/0000-0002-2890-4242"))
Description: This is the same share_llfs_data that I have previously been 
  distributing. However, rather than taring up the project and distributing it 
  that way, I am now going to distribute the data directory through Drive, and 
  keep code here. There is exactly nothing in the code that reveals anything 
  about the LLFS data. This simply provides a more user-friendly way of 
  documenting how this data is generated, and a formally versioned controlled 
  setting in which to keep a record of how the data is processed.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
biocViews:
Imports: 
    broom (>= 1.0.3),
    DESeq2 (>= 1.38.3),
    dplyr,
    edgeR,
    ggplot2 (>= 3.4.1),
    magrittr,
    plyr (>= 1.8.8),
    purrr (>= 1.0.1),
    stringr (>= 1.5.0),
    SummarizedExperiment (>= 1.30.2)
Depends: 
    R (>= 2.10)
Suggests: 
    caret (>= 6.0.94),
    ggrepel (>= 0.9.3),
    here (>= 1.0.1),
    knitr,
    readxl (>= 1.4.2),
    rmarkdown,
    RSQLite (>= 2.3.1),
    rtracklayer (>= 1.60.0),
    styler (>= 1.10.1),
    tidyverse (>= 2.0.0),
    tximport (>= 1.28.0),
    vroom (>= 1.6.3)
URL: https://github.com/cmatKhan/llfsRnaseq
VignetteBuilder: knitr
LazyData: true