diff --git a/README.md b/README.md index 04f208ca7..213485bd8 100644 --- a/README.md +++ b/README.md @@ -13,11 +13,11 @@ A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation Features include: - - high-quality Langevin integrators, including `g-BAOAB `_, `VVVR `_, and other splittings - - integrators that support nonequilibrium switching for free energy calculations or `nonequilibrium candidate Monte Carlo (NCMC) `_ + - high-quality Langevin integrators, including [g-BAOAB](http://rspa.royalsocietypublishing.org/content/472/2189/20160138), [VVVR](http://pubs.acs.org/doi/abs/10.1021/jp411770f), and other splittings + - integrators that support nonequilibrium switching for free energy calculations or [nonequilibrium candidate Monte Carlo (NCMC)](http://dx.doi.org/10.1073/pnas.1106094108) - an extensible Markov chain Monte Carlo framework for mixing Monte Carlo and molecular dynamics-based methods - enhanced sampling methods, including replica-exchange (REMD) and self-adjusted mixture sampling (SAMS) - - factories for generating `alchemically-modified `_ systems for absolute and relative free energy calculations + - factories for generating [alchemically-modified](http://alchemistry.org) systems for absolute and relative free energy calculations - a suite of test systems for benchmarking, validation, and debugging See the [documentation](http://openmmtools.readthedocs.io) at [ReadTheDocs](http://openmmtools.readthedocs.io).