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hierarchical_byMOMS-PIsample_count_table_VAG.tsv
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e50d0c183689e4053ccb35f8b29d98c8 e50d0c183689e4053ccb35f8b29da3f1 76612bd9a41885add4f6b0b7683fc62a 858ed4564f11795ec13dda4c10a0d72a 858ed4564f11795ec13dda4c10a0e1f1 e50d0c183689e4053ccb35f8b29dac3b e50d0c183689e4053ccb35f8b29db9d8 858ed4564f11795ec13dda4c10a0fe2d 76612bd9a41885add4f6b0b768400213 76612bd9a41885add4f6b0b768400cc4 76612bd9a41885add4f6b0b768400e2f 76612bd9a41885add4f6b0b768401727 858ed4564f11795ec13dda4c10a11c73 76612bd9a41885add4f6b0b768402828 88af6472fb03642dd5eaf8cddcc0d7ce 76612bd9a41885add4f6b0b7684037d2 88af6472fb03642dd5eaf8cddcbfaba0 858ed4564f11795ec13dda4c10a1a09d 858ed4564f11795ec13dda4c10a1c38e 858ed4564f11795ec13dda4c10a1d475
k__Bacteria 137791 15299 56499 23 53165 84612 5008 42239 34587 42655 50 67834 33785 120876 15642 51443 29648 485 12657 34382
p__Firmicutes 137674 15113 49630 15 40304 84311 1975 23986 30626 11535 32 67645 4844 112799 4740 15002 29347 203 10540 18813
p__Proteobacteria 49 1 9 4 1481 19 2844 76 3 177 9 31 97 108 9 23 54 15 1 5
p__Actinobacteria 39 168 4656 2 5205 92 178 18168 3940 27772 0 115 22831 7466 7622 32590 0 112 1368 10990
p__Bacteroidetes 26 17 393 1 6050 161 4 3 17 3073 9 20 1033 433 400 100 245 44 8 104
p__Fusobacteria 1 0 1811 1 6 25 7 6 0 6 0 16 4980 70 111 25 2 47 164 2
p__Synergistetes 0 0 0 0 117 3 0 0 0 1 0 4 0 0 0 3 0 0 0 0
p__Tenericutes 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
p__TM7 1 0 0 0 0 1 0 0 0 91 0 3 0 0 2760 3700 0 64 575 4468
p__Verrucomicrobia 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
p__Cyanobacteria 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
Firmicutes;c__Bacilli 137471 15068 47807 12 30978 83653 1519 18668 30588 10572 30 66806 2923 111708 1202 13442 29100 133 9252 15375
NA;c__Betaproteobacteria 1 0 0 0 179 3 717 36 2 4 0 10 9 6 4 1 0 6 0 2
Actinobacteriota;c__Actinobacteria 32 154 4510 1 5202 87 178 17350 3565 26407 0 112 15731 6863 6167 5926 0 89 1137 9987
Bacteroidota;c__Bacteroidia 25 17 393 1 6050 161 4 3 17 3073 9 20 1033 433 400 100 245 44 8 104
Actinobacteriota;c__Coriobacteriia 7 14 146 1 3 5 0 818 375 1365 0 3 7100 603 1455 26664 0 23 231 1003
Firmicutes_A;c__Clostridia 200 45 1823 3 9326 658 456 5318 38 963 2 839 1921 1091 3538 1560 247 70 1288 3438
NA;c__Epsilonproteobacteria 0 1 0 0 1040 7 2 0 1 173 0 9 36 70 0 21 36 0 1 1
Proteobacteria;c__Gammaproteobacteria 47 0 9 3 128 9 2125 40 0 0 9 12 43 30 5 1 18 9 0 1
Fusobacteriota;c__Fusobacteriia 1 0 1811 1 6 25 7 6 0 6 0 16 4980 70 111 25 2 47 164 2
Proteobacteria;c__Alphaproteobacteria 1 0 0 1 134 0 0 0 0 0 0 0 9 0 0 0 0 0 0 1
NA;c__Flavobacteriia 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Synergistota;c__Synergistia 0 0 0 0 117 3 0 0 0 1 0 4 0 0 0 3 0 0 0 0
NA;c__Mollicutes 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
NA;c__TM7-3 1 0 0 0 0 1 0 0 0 91 0 3 0 0 2760 3700 0 64 575 4468
NA;c__Erysipelotrichi 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;c__Deltaproteobacteria 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
Verrucomicrobiota;c__Verrucomicrobiae 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;c__Chloroplast 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
Firmicutes;Bacilli;o__Lactobacillales 137462 15056 47801 12 30974 83651 1516 18666 30587 10572 30 66794 2922 111708 1201 13440 29071 132 9252 15375
NA;NA;o__Burkholderiales 1 0 0 0 172 1 716 34 2 4 0 10 9 6 2 1 0 5 0 1
Actinobacteriota;Actinobacteria;o__Actinomycetales 21 152 0 1 4785 75 0 18 0 39 0 92 116 3 8 20 0 3 4 3
Bacteroidota;Bacteroidia;o__Bacteroidales 25 17 393 1 6050 161 4 3 17 3073 9 20 1033 433 400 100 245 44 8 104
Actinobacteriota;Coriobacteriia;o__Coriobacteriales 7 14 146 1 3 5 0 818 375 1365 0 3 7100 603 1455 26664 0 23 231 1003
Firmicutes;Bacilli;o__Bacillales 9 12 2 0 4 2 1 0 1 0 0 12 0 0 0 0 22 1 0 0
NA;NA;o__Gemellales 0 0 4 0 0 0 2 2 0 0 0 0 1 0 1 2 7 0 0 0
Firmicutes_A;Clostridia;o__Clostridiales 200 45 1823 3 9326 658 456 5318 38 963 2 839 1921 1091 3538 1560 247 70 1288 3438
NA;NA;o__Bifidobacteriales 11 2 4510 0 417 12 178 17332 3565 26368 0 20 15615 6860 6159 5906 0 86 1133 9984
Campylobacterota;Campylobacteria;o__Campylobacterales 0 1 0 0 1040 7 2 0 1 173 0 9 36 70 0 21 36 0 1 1
NA;NA;o__Enterobacteriales 41 0 6 3 55 6 669 11 0 0 9 1 9 15 0 0 2 9 0 0
Fusobacteriota;Fusobacteriia;o__Fusobacteriales 1 0 1811 1 6 25 7 6 0 6 0 16 4980 70 111 25 2 47 164 2
Proteobacteria;Gammaproteobacteria;o__Pseudomonadales 5 0 3 0 0 0 1456 0 0 0 0 0 0 15 0 0 0 0 0 0
Proteobacteria;Alphaproteobacteria;o__Rhizobiales 1 0 0 1 82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
NA;NA;o__Neisseriales 0 0 0 0 7 2 1 2 0 0 0 0 0 0 2 0 0 0 0 1
NA;NA;o__Pasteurellales 0 0 0 0 3 3 0 5 0 0 0 11 2 0 5 1 16 0 0 1
Bacteroidota;Bacteroidia;o__Flavobacteriales 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Synergistota;Synergistia;o__Synergistales 0 0 0 0 117 3 0 0 0 1 0 4 0 0 0 3 0 0 0 0
Firmicutes;Bacilli;o__Mycoplasmatales 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
Firmicutes;Bacilli;o__Erysipelotrichales 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Desulfobacterota;Desulfovibrionia;o__Desulfovibrionales 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
NA;NA;o__I025 0 0 0 0 0 1 0 0 0 91 0 3 0 0 2760 3700 0 64 575 4468
Proteobacteria;Alphaproteobacteria;o__Sphingomonadales 0 0 0 0 49 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0
Verrucomicrobiota;Verrucomicrobiae;o__Verrucomicrobiales 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;o__Streptophyta 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
Proteobacteria;Gammaproteobacteria;o__Xanthomonadales 0 0 0 0 70 0 0 24 0 0 0 0 32 0 0 0 0 0 0 0
NA;NA;o__CW040 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;o__Aeromonadales 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;o__Rhodocyclales 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
Proteobacteria;Alphaproteobacteria;o__Caulobacterales 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Firmicutes;Bacilli;Lactobacillales;f__Lactobacillaceae 137451 15042 47798 10 30659 83616 1502 18653 30580 10554 30 66786 2917 111702 1182 13435 28901 132 9246 15365
NA;NA;NA;f__Alcaligenaceae 0 0 0 0 0 0 0 0 2 3 0 8 0 4 0 0 0 0 0 0
NA;NA;NA;f__Prevotellaceae 14 8 393 1 6016 157 4 1 16 2885 6 11 1026 353 394 99 244 39 7 102
Actinobacteriota;Actinobacteria;Corynebacteriales;f__Corynebacteriaceae 20 143 0 0 4551 48 0 0 0 2 0 83 4 2 2 6 0 0 1 0
Actinobacteriota;Coriobacteriia;Coriobacteriales;f__Coriobacteriaceae 7 14 146 1 3 5 0 818 375 1365 0 3 7100 603 1455 26664 0 23 231 1003
Firmicutes;Bacilli;Bacillales;f__Bacillaceae 1 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0
Firmicutes;Bacilli;Lactobacillales;f__Aerococcaceae 0 5 0 0 73 6 0 0 0 1 0 0 0 3 0 0 0 0 1 0
Firmicutes;Bacilli;Staphylococcales;f__Gemellaceae 0 0 4 0 0 0 2 2 0 0 0 0 1 0 1 2 7 0 0 0
Firmicutes;Bacilli;Lactobacillales;f__Streptococcaceae 11 6 3 2 7 29 14 13 6 17 0 7 5 3 19 5 170 0 5 10
Firmicutes_C;Negativicutes;Veillonellales;f__Veillonellaceae 7 15 1821 2 490 28 451 5317 26 738 0 51 1042 1054 3242 1516 57 61 1162 3290
Actinobacteriota;Actinobacteria;Actinomycetales;f__Bifidobacteriaceae 11 2 4510 0 417 12 178 17332 3565 26368 0 20 15615 6860 6159 5906 0 86 1133 9984
Firmicutes_A;Clostridia;Peptostreptococcales;f__Peptostreptococcaceae 0 0 0 0 3 556 0 0 0 71 0 678 11 1 0 0 0 1 0 0
NA;NA;NA;f__[Tissierellaceae] 6 18 2 1 8635 67 4 0 11 120 1 67 625 13 225 43 34 2 109 139
Actinobacteriota;Actinobacteria;Actinomycetales;f__Micrococcaceae 0 1 0 1 0 3 0 1 0 0 0 0 2 0 1 0 0 0 0 1
NA;NA;NA;f__Planococcaceae 8 12 2 0 4 1 1 0 1 0 0 9 0 0 0 0 22 1 0 0
Firmicutes_A;Clostridia;Clostridiales;f__Clostridiaceae 0 4 0 0 46 0 0 0 0 0 0 21 240 0 70 1 0 6 7 0
Bacteroidota;Bacteroidia;Bacteroidales;f__Bacteroidaceae 1 8 0 0 2 0 0 2 1 3 3 8 1 1 0 0 1 1 0 1
Campylobacterota;Campylobacteria;Campylobacterales;f__Campylobacteraceae 0 1 0 0 1040 7 2 0 1 173 0 9 36 70 0 21 36 0 1 1
Bacteroidota;Bacteroidia;Bacteroidales;f__Porphyromonadaceae 9 1 0 0 20 3 0 0 0 2 0 1 0 59 5 1 0 0 1 0
Proteobacteria;Gammaproteobacteria;Enterobacterales;f__Enterobacteriaceae 41 0 6 3 55 6 669 11 0 0 9 1 9 15 0 0 2 9 0 0
Actinobacteriota;Actinobacteria;Actinomycetales;f__Actinomycetaceae 0 5 0 0 37 2 0 0 0 37 0 1 110 1 3 14 0 3 3 2
Fusobacteriota;Fusobacteriia;Fusobacteriales;f__Fusobacteriaceae 0 0 0 1 0 24 6 4 0 0 0 15 11 1 3 5 0 1 1 1
Firmicutes_A;Clostridia;Oscillospirales;f__Ruminococcaceae 129 3 0 0 1 1 1 0 0 1 1 9 2 15 0 0 0 0 0 2
Proteobacteria;Gammaproteobacteria;Pseudomonadales;f__Moraxellaceae 0 0 0 0 0 0 721 0 0 0 0 0 0 0 0 0 0 0 0 0
Bacteroidota;Bacteroidia;Bacteroidales;f__Rikenellaceae 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
NA;NA;NA;f__Bradyrhizobiaceae 0 0 0 0 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
Fusobacteriota;Fusobacteriia;Fusobacteriales;f__Leptotrichiaceae 1 0 1811 0 6 1 1 2 0 6 0 1 4969 69 108 20 2 46 163 1
Proteobacteria;Gammaproteobacteria;Betaproteobacteriales;f__Neisseriaceae 0 0 0 0 7 2 1 2 0 0 0 0 0 0 2 0 0 0 0 1
Firmicutes_A;Clostridia;Lachnospirales;f__Lachnospiraceae 51 0 0 0 5 1 0 1 1 11 0 7 0 8 1 0 0 0 8 6
Proteobacteria;Gammaproteobacteria;Enterobacterales;f__Pasteurellaceae 0 0 0 0 3 3 0 5 0 0 0 11 2 0 5 1 16 0 0 1
Proteobacteria;Gammaproteobacteria;Betaproteobacteriales;f__Burkholderiaceae 0 0 0 0 0 1 716 0 0 1 0 2 0 0 2 0 0 2 0 0
NA;NA;NA;f__[Weeksellaceae] 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;f__[Paraprevotellaceae] 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 4 0 0
Synergistota;Synergistia;Synergistales;f__Dethiosulfovibrionaceae 0 0 0 0 117 3 0 0 0 0 0 4 0 0 0 3 0 0 0 0
Firmicutes;Bacilli;Mycoplasmatales;f__Mycoplasmataceae 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
Firmicutes;Bacilli;Erysipelotrichales;f__Erysipelotrichaceae 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Desulfobacterota;Desulfovibrionia;Desulfovibrionales;f__Desulfovibrionaceae 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
NA;NA;NA;f__Rs-045 0 0 0 0 0 1 0 0 0 91 0 3 0 0 2760 3700 0 64 575 4468
NA;NA;NA;f__Propionibacteriaceae 0 1 0 0 9 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0
NA;NA;NA;f__Methylobacteriaceae 0 0 0 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Firmicutes;Bacilli;Lactobacillales;f__Enterococcaceae 0 3 0 0 234 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;f__S24-7 0 0 0 0 12 0 0 0 0 182 0 0 6 20 0 0 0 0 0 0
Proteobacteria;Alphaproteobacteria;Sphingomonadales;f__Sphingomonadaceae 0 0 0 0 12 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
NA;NA;NA;f__Verrucomicrobiaceae 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;f__Oxalobacteraceae 0 0 0 0 6 0 0 0 0 0 0 0 0 2 0 0 0 3 0 0
Proteobacteria;Gammaproteobacteria;Pseudomonadales;f__Pseudomonadaceae 5 0 3 0 0 0 735 0 0 0 0 0 0 15 0 0 0 0 0 0
Proteobacteria;Alphaproteobacteria;Rhizobiales;f__Rhizobiaceae 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Actinobacteriota;Actinobacteria;Actinomycetales;f__Dermabacteraceae 1 2 0 0 10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;f__Comamonadaceae 1 0 0 0 166 0 0 34 0 0 0 0 9 0 0 1 0 0 0 1
Proteobacteria;Gammaproteobacteria;Xanthomonadales;f__Xanthomonadaceae 0 0 0 0 70 0 0 24 0 0 0 0 32 0 0 0 0 0 0 0
Proteobacteria;Gammaproteobacteria;Enterobacterales;f__Aeromonadaceae 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Proteobacteria;Gammaproteobacteria;Betaproteobacteriales;f__Rhodocyclaceae 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
Actinobacteriota;Actinobacteria;Actinomycetales;f__Brevibacteriaceae 0 0 0 0 139 12 0 17 0 0 0 0 0 0 0 0 0 0 0 0
Proteobacteria;Alphaproteobacteria;Caulobacterales;f__Caulobacteraceae 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Actinobacteriota;Actinobacteria;Actinomycetales;f__Microbacteriaceae 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;f__Erythrobacteraceae 0 0 0 0 27 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0
NA;NA;NA;f__Leuconostocaceae 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;g__Lactobacillus 137451 15042 47798 10 30659 83616 1502 18653 30580 10554 30 66786 2917 111702 1182 13435 28901 132 9246 15365
Proteobacteria;Gammaproteobacteria;Betaproteobacteriales;Burkholderiaceae;g__Sutterella 0 0 0 0 0 0 0 0 2 3 0 8 0 4 0 0 0 0 0 0
Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;g__Prevotella 14 8 393 1 6016 157 4 1 16 2886 6 11 1026 353 395 99 244 43 7 102
Actinobacteriota;Actinobacteria;Corynebacteriales;Corynebacteriaceae;g__Corynebacterium 20 143 0 0 4551 48 0 0 0 2 0 83 4 2 2 6 0 0 1 0
Firmicutes;Bacilli;Bacillales;Bacillaceae_G;g__Bacillus 1 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0
Firmicutes;Bacilli;Lactobacillales;Aerococcaceae;g__Aerococcus 0 5 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0
Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;g__Streptococcus 11 6 3 2 7 29 14 13 6 17 0 7 5 3 19 5 170 0 5 10
Firmicutes_C;Negativicutes;Veillonellales;Dialisteraceae;g__Dialister 6 9 39 2 483 18 1 66 25 101 0 13 342 1040 229 33 57 10 58 109
NA;NA;NA;NA;g__Gardnerella 4 2 4510 0 417 8 176 17332 3565 26368 0 18 15596 6848 6159 5905 0 86 1133 9984
NA;NA;NA;NA;g__Peptostreptococcus 0 0 0 0 3 1 0 0 0 71 0 0 11 1 0 0 0 1 0 0
Firmicutes_A;Clostridia;Tissierellales;Peptoniphilaceae;g__Peptoniphilus 3 15 0 0 3182 29 1 0 3 93 1 17 83 10 25 6 18 0 7 2
Actinobacteriota;Actinobacteria;Actinomycetales;Micrococcaceae;g__Rothia 0 1 0 1 0 1 0 1 0 0 0 0 2 0 1 0 0 0 0 1
Firmicutes_A;Clostridia;Clostridiales;Clostridiaceae;g__Clostridium 0 4 0 0 46 0 0 0 0 0 0 1 240 0 70 1 0 6 7 0
Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;g__Bacteroides 1 8 0 0 2 0 0 2 1 3 3 8 1 1 0 0 1 1 0 1
Campylobacterota;Campylobacteria;Campylobacterales;Campylobacteraceae;g__Campylobacter 0 1 0 0 1040 7 2 0 1 173 0 9 36 70 0 21 36 0 1 1
Bacteroidota;Bacteroidia;Bacteroidales;Tannerellaceae;g__Parabacteroides 9 1 0 0 0 0 0 0 0 1 0 0 0 59 0 0 0 0 0 0
Actinobacteriota;Actinobacteria;Actinomycetales;Actinomycetaceae;g__Mobiluncus 0 5 0 0 37 0 0 0 0 36 0 1 104 1 0 14 0 3 3 0
Fusobacteriota;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;g__Fusobacterium 0 0 0 1 0 24 6 4 0 0 0 15 11 1 3 5 0 1 1 1
Firmicutes_A;Clostridia;Oscillospirales;Ruminococcaceae;g__Faecalibacterium 48 0 0 0 0 1 0 0 0 1 1 4 1 0 0 0 0 0 0 1
NA;NA;NA;NA;g__Proteus 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0
Firmicutes_C;Negativicutes;Veillonellales;Veillonellaceae;g__Veillonella 0 0 0 0 5 9 0 0 0 1 0 13 1 6 2 0 0 0 0 1
Firmicutes_C;Negativicutes;Veillonellales;Megasphaeraceae;g__Megasphaera 0 6 1782 0 2 1 450 5251 1 636 0 25 699 8 3011 1483 0 51 1104 3180
Fusobacteriota;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;g__Sneathia 1 0 1811 0 6 1 1 2 0 6 0 1 4969 69 108 20 2 46 162 1
NA;NA;NA;NA;g__Leptotrichia 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
Proteobacteria;Gammaproteobacteria;Betaproteobacteriales;Neisseriaceae;g__Neisseria 0 0 0 0 7 0 1 2 0 0 0 0 0 0 2 0 0 0 0 1
NA;NA;NA;NA;g__Aggregatibacter 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
Bacteroidota;Bacteroidia;Bacteroidales;Porphyromonadaceae;g__Porphyromonas 0 0 0 0 20 3 0 0 0 1 0 1 0 0 5 1 0 0 1 0
Actinobacteriota;Actinobacteria;Actinomycetales;Actinomycetaceae;g__Actinomyces 0 0 0 0 0 1 0 0 0 1 0 0 6 0 3 0 0 0 0 0
Firmicutes_A;Clostridia;Lachnospirales;Lachnospiraceae;g__Oribacterium 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;g__Lautropia 0 0 0 0 0 1 0 0 0 1 0 2 0 0 2 0 0 1 0 0
NA;NA;NA;NA;g__[Prevotella] 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 4 0 0
NA;NA;NA;NA;g__Moryella 0 0 0 0 4 0 0 0 1 9 0 0 0 0 0 0 0 0 1 0
Actinobacteriota;Actinobacteria;Actinomycetales;Bifidobacteriaceae;g__Bifidobacterium 7 0 0 0 0 4 2 0 0 0 0 2 19 12 0 1 0 0 0 0
Firmicutes_A;Clostridia;Tissierellales;Helcococcaceae;g__Parvimonas 0 0 0 0 0 0 0 0 0 2 0 0 541 0 198 33 0 1 101 123
Proteobacteria;Gammaproteobacteria;Enterobacterales;Pasteurellaceae;g__Haemophilus 0 0 0 0 3 3 0 5 0 0 0 11 2 0 4 1 16 0 0 1
Firmicutes_A;Clostridia;Tissierellales;Helcococcaceae;g__Anaerococcus 1 1 2 0 3691 16 0 0 6 10 0 38 0 2 2 1 15 0 0 14
Actinobacteriota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae;g__Collinsella 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;g__[Ruminococcus] 8 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
Firmicutes_A;Clostridia;Lachnospirales;Lachnospiraceae;g__Blautia 12 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1
NA;NA;NA;NA;g__Oscillospira 3 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0
Firmicutes_A;Clostridia;Lachnospirales;Lachnospiraceae;g__Lachnospira 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Firmicutes_A;Clostridia;Lachnospirales;Lachnospiraceae;g__Coprococcus 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1
Firmicutes_A;Clostridia;Tissierellales;Helcococcaceae;g__Finegoldia 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
Firmicutes_A;Clostridia;Lachnospirales;Lachnospiraceae;g__Roseburia 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Firmicutes_A;Clostridia;Lachnospirales;Lachnospiraceae;g__Ruminococcus 34 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
Firmicutes_A;Clostridia;Lachnospirales;Lachnospiraceae;g__Dorea 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
NA;NA;NA;NA;g__Phascolarctobacterium 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Actinobacteriota;Coriobacteriia;Coriobacteriales;Atopobiaceae;g__Atopobium 0 0 0 0 0 0 0 0 0 3 0 2 0 4 0 0 0 0 0 0
NA;NA;NA;NA;g__1-68 2 0 0 1 1746 16 3 0 2 14 0 12 0 1 0 3 1 1 1 0
Actinobacteriota;Coriobacteriia;Coriobacteriales;Eggerthellaceae;g__Slackia 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;g__Bilophila 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
NA;NA;NA;NA;g__Actinobaculum 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2
NA;NA;NA;NA;g__Propionibacterium 0 1 0 0 9 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0
NA;NA;NA;NA;g__Methylobacterium 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Firmicutes;Bacilli;Lactobacillales;Aerococcaceae;g__Facklamia 0 0 0 0 73 6 0 0 0 1 0 0 0 0 0 0 0 0 0 0
Proteobacteria;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;g__Sphingomonas 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
Verrucomicrobiota;Verrucomicrobiae;Verrucomicrobiales;Akkermansiaceae;g__Akkermansia 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;g__Enterococcus 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;g__Pseudomonas 4 0 3 0 0 0 735 0 0 0 0 0 0 15 0 0 0 0 0 0
Actinobacteriota;Actinobacteria;Actinomycetales;Dermabacteraceae;g__Dermabacter 1 2 0 0 10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;g__Acidovorax 0 0 0 0 157 0 0 23 0 0 0 0 9 0 0 0 0 0 0 1
NA;NA;NA;NA;g__Bulleidia 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Actinobacteriota;Actinobacteria;Actinomycetales;Brevibacteriaceae;g__Brevibacterium 0 0 0 0 139 12 0 17 0 0 0 0 0 0 0 0 0 0 0 0
Firmicutes_A;Clostridia;Tissierellales;Helcococcaceae;g__Helcococcus 0 2 0 0 15 6 0 0 0 1 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;g__Roseateles 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
Proteobacteria;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;g__Enhydrobacter 0 0 0 0 0 0 721 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;g__Janthinobacterium 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0
Proteobacteria;Alphaproteobacteria;Rhizobiales;Beijerinckiaceae;g__Bosea 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Firmicutes;Bacilli;Mycoplasmatales;Ureaplasmataceae;g__Ureaplasma 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;g__Ralstonia 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
NA;NA;NA;NA;g__Sarcina 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0 0 0 0 0 0
Actinobacteriota;Actinobacteria;Actinomycetales;Micrococcaceae;g__Micrococcus 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;g__Caulobacter 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;g__Sphingopyxis 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;g__Pseudoclavibacter 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;g__Shuttleworthia 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 7 4
NA;NA;NA;NA;g__Burkholderia 0 0 0 0 0 0 716 0 0 0 0 0 0 0 0 0 0 1 0 0
NA;NA;NA;NA;NA;s__coleohominis 141 0 14 0 0 0 0 0 0 0 0 0 0 212 4 1 0 0 2 0
NA;NA;NA;NA;NA;s__anaerobius 0 0 0 0 3 1 0 0 0 71 0 0 11 1 0 0 0 1 0 0
Actinobacteriota;Actinobacteria;Actinomycetales;Micrococcaceae;Rothia;s__mucilaginosa 0 1 0 1 0 1 0 1 0 0 0 0 2 0 1 0 0 0 0 1
NA;NA;NA;NA;NA;s__distasonis 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
Firmicutes_A;Clostridia;Oscillospirales;Ruminococcaceae;Faecalibacterium;s__prausnitzii 48 0 0 0 0 1 0 0 0 1 1 4 1 0 0 0 0 0 0 1
NA;NA;NA;NA;NA;s__dispar 0 0 0 0 3 0 0 0 0 1 0 13 0 2 2 0 0 0 0 1
NA;NA;NA;NA;NA;s__subflava 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__segnis 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
NA;NA;NA;NA;NA;s__nanceiensis 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__tannerae 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0
NA;NA;NA;NA;NA;s__parvula 0 0 0 0 2 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__parainfluenzae 0 0 0 0 1 2 0 3 0 0 0 11 2 0 4 1 0 0 0 1
Actinobacteriota;Coriobacteriia;Coriobacteriales;Coriobacteriaceae;Collinsella;s__aerofaciens 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Prevotella;s__copri 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
Firmicutes_A;Clostridia;Lachnospirales;Lachnospiraceae;Ruminococcus_B;s__gnavus 4 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__obeum 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__longum 0 0 0 0 0 4 0 0 0 0 0 1 0 12 0 1 0 0 0 0
NA;NA;NA;NA;NA;s__bifidum 1 0 0 0 0 0 0 0 0 0 0 0 19 0 0 0 0 0 0 0
Campylobacterota;Campylobacteria;Campylobacterales;Campylobacteraceae;Campylobacter_B;s__ureolyticus 0 0 0 0 765 6 1 0 0 172 0 6 35 0 0 19 36 0 1 1
Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;s__iners 1 0 286 0 115 169 13 13 22 78 0 0 11 400 4 82 100 0 59 63
NA;NA;NA;NA;NA;s__acnes 0 1 0 0 9 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__uniformis 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__caccae 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__muciniphila 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__zeae 0 0 0 0 0 0 0 0 204 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__veronii 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__delafieldii 0 0 0 0 157 0 0 23 0 0 0 0 9 0 0 0 0 0 0 1
NA;NA;NA;NA;NA;s__moorei 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__europaeus 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__reuteri 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__depolymerans 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
NA;NA;NA;NA;NA;s__lividum 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0
Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;s__delbrueckii 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__genosp. 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__luteus 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__alaskensis 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__bifida 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA;NA;NA;NA;NA;s__influenzae 0 0 0 0 1 2 0 3 0 0 0 11 2 0 4 1 0 0 0 1