diff --git a/.github/workflows/ontology-bump-dry-run.yml b/.github/workflows/ontology-bump-dry-run.yml index 9684115c..04f328b6 100644 --- a/.github/workflows/ontology-bump-dry-run.yml +++ b/.github/workflows/ontology-bump-dry-run.yml @@ -26,7 +26,7 @@ jobs: ${{ runner.os }}-pip- - name: Install dependencies run: | - pip install -r scripts/schema_bump_dry_run_ontologies/requirements.txt + pip install --extra-index-url https://test.pypi.org/simple/ -r scripts/schema_bump_dry_run_ontologies/requirements.txt - name: Configure AWS Credentials uses: aws-actions/configure-aws-credentials@v4 with: diff --git a/.github/workflows/push_tests.yml b/.github/workflows/push_tests.yml index cd5577d4..f804e123 100644 --- a/.github/workflows/push_tests.yml +++ b/.github/workflows/push_tests.yml @@ -50,7 +50,7 @@ jobs: - name: Install dependencies run: | pip install -r ./requirements-dev.txt - pip install -e ./cellxgene_schema_cli + pip install -e --extra-index-url https://test.pypi.org/simple/./cellxgene_schema_cli - name: cellxgene_schema_cli Unit tests run: make unit-test - name: Upload coverage results as an artifact @@ -111,7 +111,7 @@ jobs: ${{ runner.os }}-pip- - name: Install dependencies run: | - pip install -r scripts/schema_bump_dry_run_ontologies/requirements.txt + pip install -r --extra-index-url https://test.pypi.org/simple/ scripts/schema_bump_dry_run_ontologies/requirements.txt pip install -r ./requirements-dev.txt - name: Ontology Dry Run Unit Tests run: make ontology-dry-run-tests diff --git a/cellxgene_schema_cli/requirements.txt b/cellxgene_schema_cli/requirements.txt index a060e5f0..c6ee61e6 100644 --- a/cellxgene_schema_cli/requirements.txt +++ b/cellxgene_schema_cli/requirements.txt @@ -1,5 +1,5 @@ anndata>=0.8,<0.12 -cellxgene-ontology-guide==1.0.0 # update before a schema migration +cellxgene-ontology-guide==1.2.0rc0 # update before a schema migration click<9 Cython<4 numpy<2 diff --git a/scripts/schema_bump_dry_run_ontologies/requirements.txt b/scripts/schema_bump_dry_run_ontologies/requirements.txt index da32211c..04ff1228 100644 --- a/scripts/schema_bump_dry_run_ontologies/requirements.txt +++ b/scripts/schema_bump_dry_run_ontologies/requirements.txt @@ -1,2 +1,2 @@ requests<3 -git+https://github.com/chanzuckerberg/cellxgene-ontology-guide/@nayib/bump-ontologies#subdirectory=api/python +cellxgene-ontology-guide==1.2.0rc0