site.config.json

{
  "site_name": "BioImage.IO",
  "site_icon": "🦒",
  "site_logo": "/static/img/bioimage-io-logo-white.svg",
  "author": "BioImage.IO Team",
  "keywords": "Bioimaging, AI, deep learning, image processing",
  "description": "BioImage.IO -- an AI model repository for deep learning.",
  "twitter_site": "@bioimageio",
  "twitter_creator": "@weioyang",
  "twitter_image": "https://bioimage.io/static/img/bioimage-io-banner.png",
  "og_url": "https://bioimage.io",
  "og_title": "BioImage.IO",
  "og_image": "https://bioimage.io/static/img/bioimage-io-banner.png",
  "og_description": "Advanced AI models in one-click",
  "background_image": "static/img/zoo-background.svg",
  "manifest_url": "https://uk1s3.embassy.ebi.ac.uk/public-datasets/bioimage.io/collection.json",
  "explore_button_text": "🚀 Explore the Zoo",
  "subscribe_url": "https://docs.google.com/forms/d/e/1FAIpQLSfQhTjXOuTXZNtalprbsXMPd4ct2ydiMhlPc2lhcs6WY4yo0w/viewform?embedded=true",
  "contact_form_url": "https://oeway.typeform.com/to/K3j2tJt7",
  "contribute_url": "https://bioimage.io/docs/#/contribute_models/README",
  "join_partners_url": "https://bioimage.io/docs/community_partners/README.md",
  "about_url": null,
  "footer": [
    { "label": "Question",
      "tooltip": "Ask a question on image.sc forum",
      "logo": "/static/img/imagesc-logo.png", 
      "url": "https://forum.image.sc/tag/bioimageio"
    },
    { "label": "Feedback Form",
      "tooltip": "Give us some feedback through this Google Form",
      "logo": "/static/img/feedback-icon.png", 
      "url": "https://forms.gle/CA1yK4pUKMqBPtso8"
    },
    { "label": "Source Code",
      "tooltip": "Github Repository",
      "logo": "/static/img/github.png",
      "url": "https://github.com/bioimage-io/bioimage.io"
    },
    { "label": "Contact Us",
      "tooltip": "Send us a message",
      "logo": "/static/img/contact.png",
      "url": "https://oeway.typeform.com/to/K3j2tJt7"
    },
    { "label": "AI4Life",
      "tooltip": "We receive funding through the AI4Life project with support from the European Union’s Horizon Europe research and innovation programme under grant agreement number 101057970",
      "logo": "/static/img/AI4Life-logo-giraffe.png", 
      "url": "https://ai4life.eurobioimaging.eu/"
    },
    { "label": "Deploys By Netlify",
      "tooltip": "This site is powered by Netlify",
      "logo": "https://www.netlify.com/img/global/badges/netlify-color-accent.svg",
      "url": "https://www.netlify.com"
    }
  ],
  "rdf_root_repo": "bioimage-io/collection-bioimage-io",
  "enable_comment": true,
  "splash_title": "BioImage Model Zoo",
  "splash_subtitle": "Advanced AI models in one-click",
  "splash_feature_list": [
    "Integrated with Fiji, ilastik, ImJoy and more",
    "Try model instantly with BioEngine",
    "Link models to datasets and applications"
  ],
  "table_view": {
    "columns": ["name", "authors", "badges", "apps"]
  },
  "zenodo_config": {
    "enabled": true,
    "sandbox_client_id": "0Zb8YkwXBqt2zelL9WyorERRzJufdTJMgxxuibmQ",
    "production_client_id": "nO6VNWAiRjklxcVx0roedRnQncQTyEMRkTDzg6kd",
    "community": "bioimage-io",
    "use_sandbox": false
  },
  "attachment_table": {
    "columns": [
      {
        "field": "name",
        "label": "Name",
        "width": 80,
        "sortable": true
      },
      {
        "field": "description",
        "label": "Description",
        "width": 100,
        "max_length": 100,
        "sortable": true
      },
      {
        "field": "timestamp",
        "label": "Timestamp",
        "class": "tag is-success",
        "sortable": true
      },
      {
        "field": "source",
        "label": "Source",
        "type": "url",
        "text": "open",
        "class": "button is-small"
      },
      {
        "field": "download_url",
        "label": "Download",
        "type": "url",
        "text": "Download",
        "class": "button is-small"
      }
    ],
    "detailed": true,
    "detailed_image": null,
    "detailed_body": "description"
  },
  "footnote": "BioImage.IO -- a collaborative effort to bring AI models to the bioimaging community. We receive funding support from the European Union’s Horizon Europe research and innovation programme under grant agreement number 101057970 (https://ai4life.eurobioimaging.eu/)",
  "partners": [],
  "excluded_partners": ["bioimageio"],
  "excluded_tags": ["bioimage.io", "bioimage.io:model", "bioimage.io:application", "bioimage.io:workflow", "bioimage.io:notebook", "bioimage.io:dataset", "zenodo"],
  "resource_categories": [
    {
      "name": "models",
      "type": "model",
      "description": "list ai models",
      "outline_color": "rgb(36 0 236)",
      "tag_categories": {
        "modality": [
          "electron-microscopy",
          "cryo-electron-microscopy",
          "fluorescence-light-microscopy",
          "transmission-light-microscopy",
          "super-resolution-microscopy",
          "x-ray-microscopy",
          "force-microscopy",
          "high-content-imaging",
          "whole-slide-imaging",
          "other"],
        "dims": [
          "2d", "3d", "2d-t", "3d-t"],

        "content": [
          "cells",
          "nuclei",
          "extracellular-vesicles",
          "tissue",
          "plant",
          "mitochondria",
          "vasculature",
          "cell-membrane",
          "brain",
          "whole-organism"
        ],
        "framework": ["tensorflow", "pytorch", "tensorflow.js"],
        "software": ["ilastik", "imagej", "fiji", "imjoy", "deepimagej", "napari"],
        "method": [
          "stardist",
          "cellpose",
          "yolo",
          "care",
          "n2v",
          "denoiseg"
        ],
        "network": [
          "unet",
          "densenet",
          "resnet",
          "inception",
          "shufflenet"
        ],
        "task": [
          "semantic-segmentation",
          "instance-segmentation",
          "object-detection",
          "image-classification",
          "denoising",
          "image-restoration",
          "image-reconstruction",
          "in-silico-labeling"
        ]
      }
    },
    {
      "name": "applications",
      "type": "application",
      "outline_color": "rgb(83 230 7)",
      "common_tags": ["software", "notebook", "bioengine", "workflow", "macro"],
      "description": "list software, web apps, notebooks and utility tools"
    },
    {
      "name": "datasets",
      "type": "dataset",
      "outline_color": "rgb(236 0 185)",
      "description": "list datasets"
    }
  ]
}