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environment_to_phenotypic_feature_association-config.yaml
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environment_to_phenotypic_feature_association-config.yaml
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description: Any association between an environment and a phenotypic feature, where
being in the environment influences the phenotype
display_name: !!python/object/new:biolinkml.meta.ClassDefinitionName
- environment to phenotypic feature association
document_category: !!python/object/new:biolinkml.meta.ClassDefinitionName
- environment to phenotypic feature association
fields:
- display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- environment to phenotypic feature association_subject
id: subject
- description: the relationship type by which a subject is connected to an object
in an association
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- relation
id: relation
- description: connects an association to the object of the association. For example,
in a gene-to-phenotype association, the gene is subject and phenotype is object.
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- object
id: object
- description: A unique identifier for an association
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- association_id
id: id
- description: if set to true, then the association is negated i.e. is not true
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- negated
id: negated
- description: connects an association to the type of association (e.g. gene to phenotype)
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- association type
id: association_type
- cardinality: multi
description: connects an association to qualifiers that modify or qualify the meaning
of that association
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- qualifiers
id: qualifiers
- cardinality: multi
description: connects an association to publications supporting the association
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- publications
id: publications
- description: connects an association to the agent (person, organization or group)
that provided it
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- provided by
id: provided_by
- description: any slot that relates an association to another entity
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- association slot
id: association_slot
- description: A high-level grouping for the relationship type. AKA minimal predicate.
This is analogous to category for nodes.
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- edge label
id: edge_label
- description: a qualifier used in a phenotypic association to state whether the association
is specific to a particular sex.
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- sex qualifier
id: sex_qualifier
- description: a qualifier used in a phenotypic association to state how frequent
the phenotype is observed in the subject
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- frequency qualifier
id: frequency_qualifier
- description: a qualifier used in a phenotypic association to state how severe the
phenotype is in the subject
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- severity qualifier
id: severity_qualifier
- description: a qualifier used in a phenotypic association to state when the phenotype
appears is in the subject
display_name: !!python/object/new:biolinkml.meta.SlotDefinitionName
- onset qualifier
id: onset_qualifier
id: environment_to_phenotypic_feature_association
schema_generating: true
weight: 20