omicron_ba275_mutations_full.yaml

variant:
  short: 'om275'
  pangolin: 'BA.2.75'
  nextstrain: '22D'
source:
- https://github.com/cov-lineages/pango-designation/issues/773#issue-1277958189
- "https://lapis.cov-spectrum.org/gisaid/v1/sample/nuc-mutations?dateFrom=2022-02-01&variantQuery=%5B6-of%3A%20S%3A147E%2C%20S%3A152R%2C%20S%3A157L%2C%20S%3A210V%2C%20S%3A257S%2C%20S%3A339H%2C%20S%3A446S%2C%20S%3A460K%2C%20ORF1a%3A1221L%2C%20ORF1a%3A1640S%2C%20ORF1a%3A4060S%5D"
threshold: 10
revert:
  23040: 'A>A' # S:493
mut:
  241: 'C>T'
  670: 'T>G'
  2790: 'C>T'
  3037: 'C>T'
  3796: 'C>T'
  3927: 'C>T'
  4184: 'G>A'
  4321: 'C>T'
  4586: 'C>T'
  5183: 'C>T'
  9344: 'C>T'
  9424: 'A>G'
  9534: 'C>T'
  9866: 'C>T'
  10029: 'C>T'
  10198: 'C>T'
  10447: 'G>A'
  10449: 'C>A'
  11288: '-----'  # see below:
  #actually, due to repeated 'T's flanking the region, can be any of these:
  #11284: '---------' # SGF3675del
  #11288: '---------' # SGF3675del <- currently seen on covSpectrum
  12444: 'A>G'
  12880: 'C>T'
  14408: 'C>T'
  15451: 'G>A'
  15714: 'C>T'
  17410: 'C>T'
  18163: 'A>G'
  19955: 'C>T'
  20055: 'A>G'
  21618: 'C>T'
  21633: '---------'
  21987: 'G>A'
  22001: 'A>G'
  22016: 'T>C'
  22033: 'C>A'
  22190: 'A>G'
  22200: 'T>G'
  22331: 'G>A'
  22577: 'GG>CA'
  22674: 'C>T'
  22679: 'T>C'
  22686: 'C>T'
  22688: 'A>G'
  22775: 'G>A'
  22786: 'A>C'
  22813: 'G>T'
  22882: 'T>G'
  22898: 'G>A'
  22942: 'T>G'
  22992: 'G>A'
  22995: 'C>A'
  23013: 'A>C'
  23055: 'A>G'
  23063: 'A>T'
  23075: 'T>C'
  23403: 'A>G'
  23525: 'C>T'
  23599: 'T>G'
  23604: 'C>A'
  23854: 'C>A'
  23948: 'G>T'
  24424: 'A>T'
  24469: 'T>A'
  25000: 'C>T'
  25416: 'C>T'
  25584: 'C>T'
  26060: 'C>T'
  26270: 'C>T'
  26275: 'A>G'
  26577: 'C>G'
  26709: 'G>A'
  26858: 'C>T'
  27259: 'A>C'
  27382: 'GAT>CTC'
  27807: 'C>T'
  28271: 'A>T'
  28311: 'C>T'
  28362: '---------'
  28881: 'GGG>AAC'
  29510: 'A>C'
  29734: '--------------------------'