From b5583c444773dc4f5b6c81ac8b8e0803d1d35ead Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 11 Jun 2024 16:47:10 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : 537af7144413e1baae6c35e2cc4dfb4e46a3d7e7
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2024-06-11 16:46:53 +0000
Message : markdown source builds

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Source  : d47a27238fd462567d0be3b167e657e02700e193
Branch  : main
Author  : Chris Endemann <endemann@wisc.edu>
Time    : 2024-06-11 16:46:00 +0000
Message : Fix heatmap plotting bug (#470)

* Fix heatmap plotting bug

I ran into an odd bug while prepping to teach this workshop last week. With the current workshop environment running on Windows 10, I ran into this issue: https://stackoverflow.com/questions/77165100/only-the-first-row-of-annotations-displayed-on-seaborn-heatmap

Updating both matplotlib and seaborn seemed to resolve the issue:
`pip install seaborn --upgrade`
`pip install matplotlib --upgrade`

I propose we add these pip statements to the setup instructions.

* Update learners/setup.md

Co-authored-by: Sven van der Burg <s.vanderburg@esciencecenter.nl>

* Update learners/setup.md

---------

Co-authored-by: Sven van der Burg <s.vanderburg@esciencecenter.nl>
---
 2-keras.html                        | 10 +++++-----
 5-transfer-learning.html            |  4 ++--
 6-outlook.html                      |  2 +-
 aio.html                            | 16 ++++++++--------
 index.html                          | 28 ++++++++++++++--------------
 instructor/2-keras.html             | 16 ++++++++--------
 instructor/5-transfer-learning.html |  4 ++--
 instructor/6-outlook.html           |  4 ++--
 instructor/aio.html                 | 24 ++++++++++++------------
 instructor/index.html               | 28 ++++++++++++++--------------
 md5sum.txt                          |  2 +-
 pkgdown.yml                         |  2 +-
 12 files changed, 70 insertions(+), 70 deletions(-)

diff --git a/2-keras.html b/2-keras.html
index c082854b..8baeec18 100644
--- a/2-keras.html
+++ b/2-keras.html
@@ -532,7 +532,7 @@ <h3 class="callout-title">Pairplot<a class="anchor" aria-label="anchor" href="#p
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ul><li>The plots show that the green class, Gentoo is somewhat more easily
 distinguishable from the other two.</li>
@@ -659,7 +659,7 @@ <h3 class="callout-title">One-hot encoding<a class="anchor" aria-label="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>C: 3, one for each output variable class</p>
 </div>
@@ -870,7 +870,7 @@ <h4 id="optional-keras-sequential-vs-functional-api">(optional) Keras Sequential
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <p>Have a look at the output of <code>model.summary()</code>:</p>
 <div class="codewrapper sourceCode" id="cb18">
@@ -1047,7 +1047,7 @@ <h3 class="callout-title">The Training Curve<a class="anchor" aria-label="anchor
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>The training loss decreases quickly. It drops in a smooth line with
 little jitter. This is ideal for a training curve.</li>
@@ -1245,7 +1245,7 @@ <h3 class="callout-title">Confusion Matrix<a class="anchor" aria-label="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5">Show me the solution</h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <p>The confusion matrix shows that the predictions for Adelie and Gentoo
 are decent, but could be improved. However, Chinstrap is not predicted
diff --git a/5-transfer-learning.html b/5-transfer-learning.html
index 7c6b621f..1dd2864a 100644
--- a/5-transfer-learning.html
+++ b/5-transfer-learning.html
@@ -473,7 +473,7 @@ <h3 id="max-pooling">3. Max pooling<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Solutions</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="section level3">
 <h3 id="trainable-parameters-1">1. Trainable parameters<a class="anchor" aria-label="anchor" href="#trainable-parameters-1"></a></h3>
@@ -537,7 +537,7 @@ <h3 id="optional-try-out-other-pre-trained-neural-networks">4. (Optional) Try ou
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="section level3">
 <h3 id="compile-the-model-1">1. Compile the model<a class="anchor" aria-label="anchor" href="#compile-the-model-1"></a></h3>
diff --git a/6-outlook.html b/6-outlook.html
index bbbd5308..fb221dab 100644
--- a/6-outlook.html
+++ b/6-outlook.html
@@ -370,7 +370,7 @@ <h3 class="callout-title">Exercise: A real-world deep learning
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>The model summary for the Siamese model is more complex than what we
 have seen so far, but it is basically a repetition of Dense, BatchNorm,
diff --git a/aio.html b/aio.html
index 7ece814b..50de097a 100644
--- a/aio.html
+++ b/aio.html
@@ -1546,7 +1546,7 @@ <h3 class="callout-title">Pairplot<a class="anchor" aria-label="anchor" href="#p
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ul>
 <li>The plots show that the green class, Gentoo is somewhat more easily
@@ -1681,7 +1681,7 @@ <h3 class="callout-title">One-hot encoding<a class="anchor" aria-label="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>C: 3, one for each output variable class</p>
 </div>
@@ -1903,7 +1903,7 @@ <h4 id="optional-keras-sequential-vs-functional-api">(optional) Keras Sequential
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <p>Have a look at the output of <code>model.summary()</code>:</p>
 <div class="codewrapper sourceCode" id="cb18">
@@ -2093,7 +2093,7 @@ <h3 class="callout-title">The Training Curve<a class="anchor" aria-label="anchor
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>The training loss decreases quickly. It drops in a smooth line with
@@ -2322,7 +2322,7 @@ <h3 class="callout-title">Confusion Matrix<a class="anchor" aria-label="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5">Show me the solution</h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <p>The confusion matrix shows that the predictions for Adelie and Gentoo
 are decent, but could be improved. However, Chinstrap is not predicted
@@ -5740,7 +5740,7 @@ <h3 id="max-pooling">3. Max pooling<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Solutions</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="section level3">
 <h3 id="trainable-parameters-1">1. Trainable parameters<a class="anchor" aria-label="anchor" href="#trainable-parameters-1"></a>
@@ -5810,7 +5810,7 @@ <h3 id="optional-try-out-other-pre-trained-neural-networks">4. (Optional) Try ou
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="section level3">
 <h3 id="compile-the-model-1">1. Compile the model<a class="anchor" aria-label="anchor" href="#compile-the-model-1"></a>
@@ -6014,7 +6014,7 @@ <h3 class="callout-title">Exercise: A real-world deep learning
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>The model summary for the Siamese model is more complex than what we
diff --git a/index.html b/index.html
index 8fff7664..d1eee601 100644
--- a/index.html
+++ b/index.html
@@ -412,28 +412,28 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
 is the package management system associated with <a href="https://anaconda.org" class="external-link">Anaconda</a> and runs on Windows, macOS and
 Linux. Conda should already be available in your system once you
 installed Anaconda successfully. Conda thus works regardless of the
-operating system. Make sure you have an up-to-date version of Conda
-running. See <a href="https://docs.anaconda.com/anaconda/install/update-version/" class="external-link">these
-instructions</a> for updating Conda if required. {: .callout}</p>
-<p>To create a conda environment called <code>dl_workshop</code> with
-the required packages, open a terminal (Mac/Linux) or Anaconda prompt
-(Windows) and type the command:</p>
-<div class="codewrapper sourceCode" id="cb2">
+operating system.</p>
+<ol style="list-style-type: decimal"><li><p>Make sure you have an up-to-date version of Conda running. See <a href="https://docs.anaconda.com/anaconda/install/update-version/" class="external-link">these
+instructions</a> for updating Conda if required. {: .callout}</p></li>
+<li><p>To create a conda environment called <code>dl_workshop</code>
+with the required packages, open a terminal (Mac/Linux) or Anaconda
+prompt (Windows) and type the command:</p></li>
+</ol><div class="codewrapper sourceCode" id="cb2">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
 </h3>
-<pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb2-1"><a href="#cb2-1" tabindex="-1"></a><span class="ex">conda</span> create <span class="at">--name</span> dl_workshop python jupyter seaborn scikit-learn pandas</span></code></pre>
+<pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb2-1"><a href="#cb2-1" tabindex="-1"></a><span class="ex">conda</span> create <span class="at">--name</span> dl_workshop python jupyter <span class="st">'seaborn&gt;=13.0.0'</span> scikit-learn pandas</span></code></pre>
 </div>
-<p>Activate the newly created environment:</p>
-<pre><code>conda activate dl_workshop</code></pre>
-<p>Install tensorflow using pip (python’s package manager):</p>
-<div class="codewrapper sourceCode" id="cb4">
+<ol start="3" style="list-style-type: decimal"><li>Activate the newly created environment:</li>
+</ol><pre><code>conda activate dl_workshop</code></pre>
+<ol start="4" style="list-style-type: decimal"><li>After activating your environment, install tensorflow using pip
+(python’s package manager):</li>
+</ol><div class="codewrapper sourceCode" id="cb4">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
 </h3>
 <pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb4-1"><a href="#cb4-1" tabindex="-1"></a><span class="ex">pip</span> install tensorflow</span></code></pre>
 </div>
 <p>Note that modern versions of Tensorflow make Keras available as a
-module.</p>
-<p><a href="https://pip.pypa.io/en/stable/" class="external-link">pip</a> is the package
+module. <a href="https://pip.pypa.io/en/stable/" class="external-link">pip</a> is the package
 management system for Python software packages. It is integrated into
 your local Python installation and runs regardless of your operating
 system too.</p>
diff --git a/instructor/2-keras.html b/instructor/2-keras.html
index c903f58f..c15710d2 100644
--- a/instructor/2-keras.html
+++ b/instructor/2-keras.html
@@ -355,7 +355,7 @@ <h3 class="card-title">Objectives</h3>
   <h3 class="accordion-header" id="headingInstructor1">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="edit-2"></i></div>Instructor Note</h3>
 </button>
-<div id="collapseInstructor1" class="accordion-collapse collapse" aria-labelledby="headingInstructor1" data-bs-parent="#accordionInstructor1">
+<div id="collapseInstructor1" class="accordion-collapse collapse" data-bs-parent="#accordionInstructor1" aria-labelledby="headingInstructor1">
 <div class="accordion-body">
 <p>This episode really aims to go through the whole process once, as
 quickly as possible. In episode 3 we will expand on all the concepts
@@ -554,7 +554,7 @@ <h3 class="callout-title">Pairplot<a class="anchor" aria-label="anchor" href="#p
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ul><li>The plots show that the green class, Gentoo is somewhat more easily
 distinguishable from the other two.</li>
@@ -681,7 +681,7 @@ <h3 class="callout-title">One-hot encoding<a class="anchor" aria-label="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>C: 3, one for each output variable class</p>
 </div>
@@ -734,7 +734,7 @@ <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"><
   <h3 class="accordion-header" id="headingInstructor2">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="edit-2"></i></div>BREAK</h3>
 </button>
-<div id="collapseInstructor2" class="accordion-collapse collapse" aria-labelledby="headingInstructor2" data-bs-parent="#accordionInstructor2">
+<div id="collapseInstructor2" class="accordion-collapse collapse" data-bs-parent="#accordionInstructor2" aria-labelledby="headingInstructor2">
 <div class="accordion-body">
 <p>This is a good time for switching instructor and/or a break.</p>
 </div>
@@ -904,7 +904,7 @@ <h4 id="optional-keras-sequential-vs-functional-api">(optional) Keras Sequential
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <p>Have a look at the output of <code>model.summary()</code>:</p>
 <div class="codewrapper sourceCode" id="cb18">
@@ -1081,7 +1081,7 @@ <h3 class="callout-title">The Training Curve<a class="anchor" aria-label="anchor
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>The training loss decreases quickly. It drops in a smooth line with
 little jitter. This is ideal for a training curve.</li>
@@ -1205,7 +1205,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
   <h3 class="accordion-header" id="headingInstructor3">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="edit-2"></i></div>BREAK</h3>
 </button>
-<div id="collapseInstructor3" class="accordion-collapse collapse" aria-labelledby="headingInstructor3" data-bs-parent="#accordionInstructor3">
+<div id="collapseInstructor3" class="accordion-collapse collapse" data-bs-parent="#accordionInstructor3" aria-labelledby="headingInstructor3">
 <div class="accordion-body">
 <p>This is a good time for switching instructor and/or a break.</p>
 </div>
@@ -1291,7 +1291,7 @@ <h3 class="callout-title">Confusion Matrix<a class="anchor" aria-label="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5">Show me the solution</h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <p>The confusion matrix shows that the predictions for Adelie and Gentoo
 are decent, but could be improved. However, Chinstrap is not predicted
diff --git a/instructor/5-transfer-learning.html b/instructor/5-transfer-learning.html
index 9d9989b1..f0bf8ddf 100644
--- a/instructor/5-transfer-learning.html
+++ b/instructor/5-transfer-learning.html
@@ -475,7 +475,7 @@ <h3 id="max-pooling">3. Max pooling<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Solutions</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="section level3">
 <h3 id="trainable-parameters-1">1. Trainable parameters<a class="anchor" aria-label="anchor" href="#trainable-parameters-1"></a></h3>
@@ -539,7 +539,7 @@ <h3 id="optional-try-out-other-pre-trained-neural-networks">4. (Optional) Try ou
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="section level3">
 <h3 id="compile-the-model-1">1. Compile the model<a class="anchor" aria-label="anchor" href="#compile-the-model-1"></a></h3>
diff --git a/instructor/6-outlook.html b/instructor/6-outlook.html
index d1dbc78a..5e1d3fa2 100644
--- a/instructor/6-outlook.html
+++ b/instructor/6-outlook.html
@@ -350,7 +350,7 @@ <h3 class="card-title">Objectives</h3>
   <h3 class="accordion-header" id="headingInstructor1">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="edit-2"></i></div>Instructor Note</h3>
 </button>
-<div id="collapseInstructor1" class="accordion-collapse collapse" aria-labelledby="headingInstructor1" data-bs-parent="#accordionInstructor1">
+<div id="collapseInstructor1" class="accordion-collapse collapse" data-bs-parent="#accordionInstructor1" aria-labelledby="headingInstructor1">
 <div class="accordion-body">
 <p>You don’t have to use this project as an example. It works best to
 use a suitable deep learning project that you know well and are
@@ -386,7 +386,7 @@ <h3 class="callout-title">Exercise: A real-world deep learning
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>The model summary for the Siamese model is more complex than what we
 have seen so far, but it is basically a repetition of Dense, BatchNorm,
diff --git a/instructor/aio.html b/instructor/aio.html
index d4fb8e64..816ea979 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -1358,7 +1358,7 @@ <h3 class="card-title">Objectives</h3>
   <h3 class="accordion-header" id="headingInstructor1">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="edit-2"></i></div>Instructor Note</h3>
 </button>
-<div id="collapseInstructor1" class="accordion-collapse collapse" aria-labelledby="headingInstructor1" data-bs-parent="#accordionInstructor1">
+<div id="collapseInstructor1" class="accordion-collapse collapse" data-bs-parent="#accordionInstructor1" aria-labelledby="headingInstructor1">
 <div class="accordion-body">
 <p>This episode really aims to go through the whole process once, as
 quickly as possible. In episode 3 we will expand on all the concepts
@@ -1590,7 +1590,7 @@ <h3 class="callout-title">Pairplot<a class="anchor" aria-label="anchor" href="#p
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ul>
 <li>The plots show that the green class, Gentoo is somewhat more easily
@@ -1725,7 +1725,7 @@ <h3 class="callout-title">One-hot encoding<a class="anchor" aria-label="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>C: 3, one for each output variable class</p>
 </div>
@@ -1779,7 +1779,7 @@ <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"><
   <h3 class="accordion-header" id="headingInstructor2">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="edit-2"></i></div>BREAK</h3>
 </button>
-<div id="collapseInstructor2" class="accordion-collapse collapse" aria-labelledby="headingInstructor2" data-bs-parent="#accordionInstructor2">
+<div id="collapseInstructor2" class="accordion-collapse collapse" data-bs-parent="#accordionInstructor2" aria-labelledby="headingInstructor2">
 <div class="accordion-body">
 <p>This is a good time for switching instructor and/or a break.</p>
 </div>
@@ -1959,7 +1959,7 @@ <h4 id="optional-keras-sequential-vs-functional-api">(optional) Keras Sequential
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <p>Have a look at the output of <code>model.summary()</code>:</p>
 <div class="codewrapper sourceCode" id="cb18">
@@ -2149,7 +2149,7 @@ <h3 class="callout-title">The Training Curve<a class="anchor" aria-label="anchor
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>The training loss decreases quickly. It drops in a smooth line with
@@ -2300,7 +2300,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
   <h3 class="accordion-header" id="headingInstructor3">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="edit-2"></i></div>BREAK</h3>
 </button>
-<div id="collapseInstructor3" class="accordion-collapse collapse" aria-labelledby="headingInstructor3" data-bs-parent="#accordionInstructor3">
+<div id="collapseInstructor3" class="accordion-collapse collapse" data-bs-parent="#accordionInstructor3" aria-labelledby="headingInstructor3">
 <div class="accordion-body">
 <p>This is a good time for switching instructor and/or a break.</p>
 </div>
@@ -2390,7 +2390,7 @@ <h3 class="callout-title">Confusion Matrix<a class="anchor" aria-label="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5">Show me the solution</h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <p>The confusion matrix shows that the predictions for Adelie and Gentoo
 are decent, but could be improved. However, Chinstrap is not predicted
@@ -5959,7 +5959,7 @@ <h3 id="max-pooling">3. Max pooling<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Solutions</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="section level3">
 <h3 id="trainable-parameters-1">1. Trainable parameters<a class="anchor" aria-label="anchor" href="#trainable-parameters-1"></a>
@@ -6029,7 +6029,7 @@ <h3 id="optional-try-out-other-pre-trained-neural-networks">4. (Optional) Try ou
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="section level3">
 <h3 id="compile-the-model-1">1. Compile the model<a class="anchor" aria-label="anchor" href="#compile-the-model-1"></a>
@@ -6208,7 +6208,7 @@ <h3 class="card-title">Objectives</h3>
   <h3 class="accordion-header" id="headingInstructor1">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="edit-2"></i></div>Instructor Note</h3>
 </button>
-<div id="collapseInstructor1" class="accordion-collapse collapse" aria-labelledby="headingInstructor1" data-bs-parent="#accordionInstructor1">
+<div id="collapseInstructor1" class="accordion-collapse collapse" data-bs-parent="#accordionInstructor1" aria-labelledby="headingInstructor1">
 <div class="accordion-body">
 <p>You don’t have to use this project as an example. It works best to
 use a suitable deep learning project that you know well and are
@@ -6248,7 +6248,7 @@ <h3 class="callout-title">Exercise: A real-world deep learning
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>The model summary for the Siamese model is more complex than what we
diff --git a/instructor/index.html b/instructor/index.html
index 3d7db2ad..dd2208f0 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -527,28 +527,28 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
 is the package management system associated with <a href="https://anaconda.org" class="external-link">Anaconda</a> and runs on Windows, macOS and
 Linux. Conda should already be available in your system once you
 installed Anaconda successfully. Conda thus works regardless of the
-operating system. Make sure you have an up-to-date version of Conda
-running. See <a href="https://docs.anaconda.com/anaconda/install/update-version/" class="external-link">these
-instructions</a> for updating Conda if required. {: .callout}</p>
-<p>To create a conda environment called <code>dl_workshop</code> with
-the required packages, open a terminal (Mac/Linux) or Anaconda prompt
-(Windows) and type the command:</p>
-<div class="codewrapper sourceCode" id="cb2">
+operating system.</p>
+<ol style="list-style-type: decimal"><li><p>Make sure you have an up-to-date version of Conda running. See <a href="https://docs.anaconda.com/anaconda/install/update-version/" class="external-link">these
+instructions</a> for updating Conda if required. {: .callout}</p></li>
+<li><p>To create a conda environment called <code>dl_workshop</code>
+with the required packages, open a terminal (Mac/Linux) or Anaconda
+prompt (Windows) and type the command:</p></li>
+</ol><div class="codewrapper sourceCode" id="cb2">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
 </h3>
-<pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb2-1"><a href="#cb2-1" tabindex="-1"></a><span class="ex">conda</span> create <span class="at">--name</span> dl_workshop python jupyter seaborn scikit-learn pandas</span></code></pre>
+<pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb2-1"><a href="#cb2-1" tabindex="-1"></a><span class="ex">conda</span> create <span class="at">--name</span> dl_workshop python jupyter <span class="st">'seaborn&gt;=13.0.0'</span> scikit-learn pandas</span></code></pre>
 </div>
-<p>Activate the newly created environment:</p>
-<pre><code>conda activate dl_workshop</code></pre>
-<p>Install tensorflow using pip (python’s package manager):</p>
-<div class="codewrapper sourceCode" id="cb4">
+<ol start="3" style="list-style-type: decimal"><li>Activate the newly created environment:</li>
+</ol><pre><code>conda activate dl_workshop</code></pre>
+<ol start="4" style="list-style-type: decimal"><li>After activating your environment, install tensorflow using pip
+(python’s package manager):</li>
+</ol><div class="codewrapper sourceCode" id="cb4">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
 </h3>
 <pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb4-1"><a href="#cb4-1" tabindex="-1"></a><span class="ex">pip</span> install tensorflow</span></code></pre>
 </div>
 <p>Note that modern versions of Tensorflow make Keras available as a
-module.</p>
-<p><a href="https://pip.pypa.io/en/stable/" class="external-link">pip</a> is the package
+module. <a href="https://pip.pypa.io/en/stable/" class="external-link">pip</a> is the package
 management system for Python software packages. It is integrated into
 your local Python installation and runs regardless of your operating
 system too.</p>
diff --git a/md5sum.txt b/md5sum.txt
index c782d276..55baa30f 100644
--- a/md5sum.txt
+++ b/md5sum.txt
@@ -17,6 +17,6 @@
 "instructors/schedule.md" "da1a92ad7102c42c77abb5170ace55fd" "site/built/schedule.md" "2024-06-11"
 "instructors/survey-templates.md" "ea5d46e7b54d335f79e57a7bc31d1c5c" "site/built/survey-templates.md" "2024-06-11"
 "learners/reference.md" "e47218673643f23431c540c2d3b27868" "site/built/reference.md" "2024-06-11"
-"learners/setup.md" "8833a7eec970679022fca980623323ff" "site/built/setup.md" "2024-06-11"
+"learners/setup.md" "c619ca4ab3a6754f4d0dd7ac0eae4ea6" "site/built/setup.md" "2024-06-11"
 "profiles/learner-profiles.md" "698c27136a1a320b0c04303403859bdc" "site/built/learner-profiles.md" "2024-06-11"
 "renv/profiles/lesson-requirements/renv.lock" "06e8bdca5a2593032cad473c15af14ce" "site/built/renv.lock" "2024-06-11"
diff --git a/pkgdown.yml b/pkgdown.yml
index 1a8f44ea..46a981be 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,5 +2,5 @@ pandoc: 3.1.11
 pkgdown: 2.0.9
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-06-11T06:28Z
+last_built: 2024-06-11T16:46Z