From fd4d66de9dc530c4f2db8c59099a32ccb462a0b1 Mon Sep 17 00:00:00 2001 From: jkobject Date: Wed, 4 Sep 2024 17:28:49 +0200 Subject: [PATCH] =?UTF-8?q?release:=20version=201.1.0=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- HISTORY.md | 102 +++++++++++++++++++++++++++++++++++++++++++++++ grnndata/VERSION | 2 +- pyproject.toml | 23 ++++++----- 3 files changed, 115 insertions(+), 12 deletions(-) diff --git a/HISTORY.md b/HISTORY.md index e69de29..de45ae4 100644 --- a/HISTORY.md +++ b/HISTORY.md @@ -0,0 +1,102 @@ +Changelog +========= + + +(unreleased) +------------ +- Better release process. [jkobject] +- Format and clean. [jkobject] +- Wip. [jkobject] +- Pushing the tests. [jkobject] +- Adding codecov. [jkobject] +- Updating the makefile. [jkobject] +- Update package version. [jkobject] + + +1.0.2 (2024-08-11) +------------------ +- Release: version 1.0.2 🚀 [jkobject] +- Release: version 1.0.1 🚀 [jkobject] +- Debug. [jkobject] +- Adding tests. [jkobject] +- Adding documentation. [jkobject] + + +1.0.0 (2024-08-06) +------------------ +- Release: version 1.0.0 🚀 [jkobject] +- Merge branch 'dev' into main. [jkobject] +- Debug enrichment and centrality. [jkobject] +- Adding new plotting. [jkobject] +- Merge branch 'dev' of https://github.com/cantinilab/GRnnData into dev. + [jkobject] +- Adding background. [maestro-jk] +- Better background. [jkobject] +- Some more debugs. [jkobject] +- Solve issues. [jkobject] +- Wip on plotting gene networks. [jkobject] +- Making it work on new hardware. [maestro-jk] +- Tiny side case. [jkobject] +- Better utils. [jkobject] +- Working with mouse. [jkobject] +- Some new methods. [jkobject] +- Some more install requirements and new functions. [jkobject] +- Some more docs and better deps. [jkobject] +- Adding some more features. [jkobject] +- Update README.md. [Jérémie Kalfon] + + +1.0.1 (2024-01-11) +------------------ +- Making the release. [jkobject] +- Working on improving grnndata. [jkobject] +- Testing and creating a first version of GRnnData. [jkobject] +- Finish switch to peotry. [jkobject] +- Update LICENSE. [Jérémie Kalfon] +- Improving and making it ready for first release. [jkobject] +- Update. [jkobject] +- Update extract_links to return output sorted by scores. [Rémi + Trimbour] +- Add mu file. [jkobject] +- Merge pull request #1 from + cantinilab/dependabot/github_actions/stefanzweifel/git-auto-commit- + action-5. [Jérémie Kalfon] + + Bump stefanzweifel/git-auto-commit-action from 4 to 5 +- ✅ Ready to clone and code. [dependabot[bot]] +- Bump stefanzweifel/git-auto-commit-action from 4 to 5. + [dependabot[bot]] + + Bumps [stefanzweifel/git-auto-commit-action](https://github.com/stefanzweifel/git-auto-commit-action) from 4 to 5. + - [Release notes](https://github.com/stefanzweifel/git-auto-commit-action/releases) + - [Changelog](https://github.com/stefanzweifel/git-auto-commit-action/blob/master/CHANGELOG.md) + - [Commits](https://github.com/stefanzweifel/git-auto-commit-action/compare/v4...v5) + + --- + updated-dependencies: + - dependency-name: stefanzweifel/git-auto-commit-action + dependency-type: direct:production + update-type: version-update:semver-major + ... +- Merge pull request #3 from + cantinilab/dependabot/github_actions/actions/setup-python-5. [Jérémie + Kalfon] + + Bump actions/setup-python from 4 to 5 +- ✅ Ready to clone and code. [dependabot[bot]] +- Bump actions/setup-python from 4 to 5. [dependabot[bot]] + + Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5. + - [Release notes](https://github.com/actions/setup-python/releases) + - [Commits](https://github.com/actions/setup-python/compare/v4...v5) + + --- + updated-dependencies: + - dependency-name: actions/setup-python + dependency-type: direct:production + update-type: version-update:semver-major + ... +- ✅ Ready to clone and code. [jkobject] +- Initial commit. [Jérémie Kalfon] + + diff --git a/grnndata/VERSION b/grnndata/VERSION index 4f16f4d..9084fa2 100644 --- a/grnndata/VERSION +++ b/grnndata/VERSION @@ -1 +1 @@ -77595{TAG} +1.1.0 diff --git a/pyproject.toml b/pyproject.toml index c5b8ad7..11f0ed0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api" [tool.poetry] name = "grnndata" -version = "1.0.2" +version = "1.1.0" description = "Awesome gene regulatory network enhanced anndata" authors = [ "jkobject",] readme = [ "README.md", "LICENSE",] @@ -19,6 +19,7 @@ scipy = "*" networkx = "*" gseapy = "1.*" numpy = "*" +leidenalg = "*" louvain = "*" powerlaw = "*" pyvis = "*" @@ -34,41 +35,41 @@ grnndata = "grnndata.__main__:main" [tool.poetry.dependencies.pytest] -version = "^7.4.3" +version = "1.1.0" optional = true [tool.poetry.dependencies.coverage] -version = "^7.3.2" +version = "1.1.0" optional = true [tool.poetry.dependencies.flake8] -version = "^6.1.0" +version = "1.1.0" optional = true [tool.poetry.dependencies.black] -version = "^23.10.1" +version = "1.1.0" optional = true [tool.poetry.dependencies.isort] -version = "^5.12.0" +version = "1.1.0" optional = true [tool.poetry.dependencies.pytest-cov] -version = "^4.1.0" +version = "1.1.0" optional = true [tool.poetry.dependencies.mypy] -version = "^1.6.1" +version = "1.1.0" optional = true [tool.poetry.dependencies.gitchangelog] -version = "^3.0.4" +version = "1.1.0" optional = true [tool.poetry.dependencies.mkdocs] -version = "^1.5.3" +version = "1.1.0" optional = true [tool.poetry.dependencies.toml] -version = "^0.10.2" +version = "1.1.0" optional = true