From d5862c85870353965d8d52314993fa9aef48c5cc Mon Sep 17 00:00:00 2001
From: ofisette <ofisette@users.noreply.github.com>
Date: Sun, 3 Nov 2024 21:48:19 +0000
Subject: [PATCH] deploy: 3f5f5acbb405f9f4c6a3503c7b92ba9ca29c97d0

---
 4-storage.html           | 8 ++++----
 _sources/4-storage.ipynb | 2 +-
 searchindex.js           | 2 +-
 3 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/4-storage.html b/4-storage.html
index 2fece0f..ecd506c 100644
--- a/4-storage.html
+++ b/4-storage.html
@@ -340,7 +340,7 @@ <h2> Contents </h2>
 </ul>
 </li>
 <li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#storage-management">Storage Management</a><ul class="nav section-nav flex-column">
-<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#challenges-relating-to-active-data">Challenges relating to active data</a></li>
+<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#active-data-related-challenges">Active data-related challenges</a></li>
 <li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#life-cycle-of-active-data">Life Cycle of Active Data</a><ul class="nav section-nav flex-column">
 <li class="toc-h4 nav-item toc-entry"><a class="reference internal nav-link" href="#example-of-the-life-cycle-of-active-data">Example of the Life Cycle of Active Data</a></li>
 <li class="toc-h4 nav-item toc-entry"><a class="reference internal nav-link" href="#exercise-running-a-small-pipeline"><strong>Exercise</strong> - Running a Small Pipeline</a></li>
@@ -575,8 +575,8 @@ <h3><code class="docutils literal notranslate"><span class="pre">/nearline</span
 </section>
 <section id="storage-management">
 <h2>Storage Management<a class="headerlink" href="#storage-management" title="Link to this heading">#</a></h2>
-<section id="challenges-relating-to-active-data">
-<h3>Challenges relating to active data<a class="headerlink" href="#challenges-relating-to-active-data" title="Link to this heading">#</a></h3>
+<section id="active-data-related-challenges">
+<h3>Active data-related challenges<a class="headerlink" href="#active-data-related-challenges" title="Link to this heading">#</a></h3>
 <p>Research data management involves the following steps:</p>
 <ol class="arabic simple">
 <li><p><a class="reference external" href="https://dmp-pgd.ca/">Making a data management plan</a></p></li>
@@ -837,7 +837,7 @@ <h2>Key Points<a class="headerlink" href="#key-points" title="Link to this headi
 </ul>
 </li>
 <li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#storage-management">Storage Management</a><ul class="nav section-nav flex-column">
-<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#challenges-relating-to-active-data">Challenges relating to active data</a></li>
+<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#active-data-related-challenges">Active data-related challenges</a></li>
 <li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#life-cycle-of-active-data">Life Cycle of Active Data</a><ul class="nav section-nav flex-column">
 <li class="toc-h4 nav-item toc-entry"><a class="reference internal nav-link" href="#example-of-the-life-cycle-of-active-data">Example of the Life Cycle of Active Data</a></li>
 <li class="toc-h4 nav-item toc-entry"><a class="reference internal nav-link" href="#exercise-running-a-small-pipeline"><strong>Exercise</strong> - Running a Small Pipeline</a></li>
diff --git a/_sources/4-storage.ipynb b/_sources/4-storage.ipynb
index 5cf1107..baf460a 100644
--- a/_sources/4-storage.ipynb
+++ b/_sources/4-storage.ipynb
@@ -198,7 +198,7 @@
    "metadata": {},
    "source": [
     "## Storage Management\n",
-    "### Challenges relating to active data\n",
+    "### Active data-related challenges\n",
     "Research data management involves the following steps:\n",
     "\n",
     "1. [Making a data management plan](https://dmp-pgd.ca/)\n",
diff --git a/searchindex.js b/searchindex.js
index e595589..059221d 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
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\ No newline at end of file
+Search.setIndex({"alltitles": {"$HOME - Your Personal Space": [[4, "home-your-personal-space"]], "$SCRATCH - Temporary Network Space": [[4, "scratch-temporary-network-space"]], "$SLURM_TMPDIR - Temporary Local Space": [[4, "slurm-tmpdir-temporary-local-space"]], "(Demo) Checking Resources Used by a Running GPU Job": [[2, "demo-checking-resources-used-by-a-running-gpu-job"]], "/nearline - Long Term Storage": [[4, "nearline-long-term-storage"]], "/project - Shared Project Space": [[4, "project-shared-project-space"]], "About this workshop": [[0, "about-this-workshop"]], "Active data-related challenges": [[4, "active-data-related-challenges"]], "Additional Exercises": [[5, null]], "Analyse des ressources utilis\u00e9es": [[5, "analyse-des-ressources-utilisees"]], "Analyse d\u2019acc\u00e9l\u00e9ration": [[8, null]], "Analysing Compute Jobs on Clusters": [[2, "analysing-compute-jobs-on-clusters"]], "Analysing Compute Jobs on Your Computer": [[2, "analysing-compute-jobs-on-your-computer"]], "Blastn example": [[7, "blastn-example"]], "Caract\u00e9ristiques de vos donn\u00e9es": [[12, "caracteristiques-de-vos-donnees"]], "Comparer la vitesse CPU vs GPU": [[8, "comparer-la-vitesse-cpu-vs-gpu"]], "Comparing the Speed of CPU Cores and a GPU": [[2, "comparing-the-speed-of-cpu-cores-and-a-gpu"]], "Comparison of Compute Clusters": [[2, "comparison-of-compute-clusters"]], "Complexit\u00e9 de l\u2019algorithme": [[5, "complexite-de-l-algorithme"]], "Compression des fichiers": [[12, "compression-des-fichiers"]], "Data Parallelism": [[1, "data-parallelism"]], "Data Size and Number of Files to Process": [[2, "data-size-and-number-of-files-to-process"]], "Different Kinds of Compute Tasks": [[1, "different-kinds-of-compute-tasks"]], "Different Types of Storage": [[4, "different-types-of-storage"]], "Efficacit\u00e9 cible du calcul parall\u00e8le": [[8, "efficacite-cible-du-calcul-parallele"]], "Estimating Required Compute Resources": [[2, "estimating-required-compute-resources"]], "Estimation des besoins en m\u00e9moire-vive": [[9, null]], "Example of the Life Cycle of Active Data": [[4, "example-of-the-life-cycle-of-active-data"]], "Exemple de partage de dossier:": [[12, "exemple-de-partage-de-dossier"]], "Exercice - Calcul d\u2019acc\u00e9l\u00e9ration et d\u2019efficacit\u00e9": [[8, "exercice-calcul-d-acceleration-et-d-efficacite"]], "Exercice - Liste de cas Blastn avec GLOST": [[10, "exercice-liste-de-cas-blastn-avec-glost"]], "Exercice - Taille maximale d\u2019une t\u00e2che parall\u00e8le": [[8, "exercice-taille-maximale-d-une-tache-parallele"]], "Exercise - Aligning DNA Sequences": [[3, "exercise-aligning-dna-sequences"]], "Exercise - Checking Resources Used by a Running Job": [[2, "exercise-checking-resources-used-by-a-running-job"]], "Exercise - Job Arrays": [[3, "exercise-job-arrays"]], "Exercise - Job Efficiency": [[2, "exercise-job-efficiency"]], "Exercise - Running a Small Pipeline": [[4, "exercise-running-a-small-pipeline"]], "Exercise - Testing crunch.py with One GPU": [[2, "exercise-testing-crunch-py-with-one-gpu"]], "Extrapolating Required Compute Resources": [[2, "extrapolating-required-compute-resources"]], "Extrapoler les ressources n\u00e9cessaires": [[8, "extrapoler-les-ressources-necessaires"]], "Fichiers \u00e9pars (sparse files)": [[12, "fichiers-epars-sparse-files"]], "GNU Parallel": [[3, "gnu-parallel"]], "GNU Parallel Command Syntax": [[3, "gnu-parallel-command-syntax"]], "Generating random sequences": [[7, "generating-random-sequences"]], "Generating the data": [[7, null]], "Goal - Writing a Proper Job Script for Slurm": [[2, "goal-writing-a-proper-job-script-for-slurm"]], "In Case of Inaccessible Data": [[4, "in-case-of-inaccessible-data"]], "In Linux": [[2, "in-linux"]], "In Windows": [[2, "in-windows"]], "In macOS": [[2, "in-macos"]], "Installation de Benchmark 5D": [[5, "installation-de-benchmark-5d"]], "Introduction": [[1, null]], "Job Arrays": [[3, "job-arrays"]], "Jobs Analysis via Cluster Portals": [[2, "jobs-analysis-via-cluster-portals"]], "Key Points": [[2, "key-points"], [3, "key-points"], [4, "key-points"]], "Le Greedy Launcher Of Small Tasks, ou GLOST": [[10, null]], "Life Cycle of Active Data": [[4, "life-cycle-of-active-data"]], "Limiting the Number of Simultaneous Processes": [[3, "limiting-the-number-of-simultaneous-processes"]], "Loi d\u2019Amdahl": [[8, "loi-d-amdahl"]], "META-Farm - Le meilleur de GNU Parallel et GLOST": [[10, "meta-farm-le-meilleur-de-gnu-parallel-et-glost"]], "Mastering the Alliance\u2019s Compute Systems": [[0, null]], "Ma\u00eetriser l\u2019ordonnanceur Slurm": [[11, null]], "Multiple Combinations of Parameter Values": [[3, "multiple-combinations-of-parameter-values"]], "Niveaux d\u2019acc\u00e8s": [[12, "niveaux-d-acces"]], "Nombre": [[12, "nombre"]], "Notions avanc\u00e9es du stockage": [[12, null]], "One Sequence of Parameter Values": [[3, "one-sequence-of-parameter-values"]], "Other Tools": 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