From 96811eedf2b5e148d00b5a7cda5c278613370713 Mon Sep 17 00:00:00 2001
From: Chen Yang <cafferychen7850@gmail.com>
Date: Mon, 4 Nov 2024 14:13:45 -0600
Subject: [PATCH] fix: Optimize PDF filename generation in
 generate_taxa_indiv_spaghettiplot_long

- Shorten base filename to prevent system path length limitations
- Remove unnecessary parameters from filename
- Keep only essential identifiers (feature level, time var, group)
- Add filename length check (max 200 chars)
- Maintain readability while ensuring uniqueness
- Fix GitHub Actions deployment issues related to long filenames

This change addresses the 'Filename too long' errors in GitHub Actions while maintaining the ability to distinguish between different plot outputs.
---
 R/generate_taxa_indiv_spaghettiplot_long.R | 14 +-------------
 1 file changed, 1 insertion(+), 13 deletions(-)

diff --git a/R/generate_taxa_indiv_spaghettiplot_long.R b/R/generate_taxa_indiv_spaghettiplot_long.R
index 7e47529..0c6a106 100644
--- a/R/generate_taxa_indiv_spaghettiplot_long.R
+++ b/R/generate_taxa_indiv_spaghettiplot_long.R
@@ -366,19 +366,7 @@ generate_taxa_indiv_spaghettiplot_long <-
           prev.filter,
           "_",
           "abund_filter_",
-          abund.filter,
-          "_",
-          "base_size_",
-          base.size,
-          "_",
-          "theme_choice_",
-          theme.choice,
-          "_",
-          "pdf_wid_",
-          pdf.wid,
-          "_",
-          "pdf_hei_",
-          pdf.hei
+          abund.filter
         )
 
         if (!is.null(file.ann)) {