Add categorical patient level filtering for generic-assay-data-counts

[fuzhaoyuan]

Fix #11115

[sonarcloud]

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[haynescd]

👍

[haynescd]

Only thing. Have you tried updating the Order By for

CREATE TABLE IF NOT EXISTS generic_assay_data_derived
(
    sample_unique_id String,
    patient_unique_id String,
    genetic_entity_id String,
    value String,
    generic_assay_type String,
    profile_stable_id String,
    entity_stable_id String,
    datatype String,
    patient_level NUMERIC,
    profile_type String
)
    ENGINE = MergeTree()
ORDER BY (profile_type, entity_stable_id, sample_unique_id);

To have patient_unique_id before sample_unique_id?

[fuzhaoyuan]

Only thing. Have you tried updating the Order By for

CREATE TABLE IF NOT EXISTS generic_assay_data_derived
(
    sample_unique_id String,
    patient_unique_id String,
    genetic_entity_id String,
    value String,
    generic_assay_type String,
    profile_stable_id String,
    entity_stable_id String,
    datatype String,
    patient_level NUMERIC,
    profile_type String
)
    ENGINE = MergeTree()
ORDER BY (profile_type, entity_stable_id, sample_unique_id);

To have patient_unique_id before sample_unique_id?

I didn't think of that. I'll add it in. Thanks for the catch!

[sonarcloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
44.1% Coverage on New Code
0.0% Duplication on New Code

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