diff --git a/charts/diz-in-a-box/Chart.lock b/charts/diz-in-a-box/Chart.lock index 0afe9a70..aa0a55c2 100644 --- a/charts/diz-in-a-box/Chart.lock +++ b/charts/diz-in-a-box/Chart.lock @@ -4,12 +4,12 @@ dependencies: version: 0.24.0 - name: stream-processors repository: https://miracum.github.io/charts - version: 1.6.0 + version: 1.6.1 - name: hapi-fhir-jpaserver repository: https://hapifhir.github.io/hapi-fhir-jpaserver-starter version: 0.15.0 - name: fhir-gateway repository: https://miracum.github.io/charts - version: 6.2.0 -digest: sha256:a8beeea01663ba075258174948eee1c377bdbf1cb70252c01e188003f477bd18 -generated: "2024-02-22T07:51:46.369204628Z" + version: 6.2.1 +digest: sha256:5261f1aa7c0d98f0b1a26727a83121cec499fb4066dfe62b59ab6e587c4ae63e +generated: "2024-03-11T19:26:46.050321168Z" diff --git a/charts/diz-in-a-box/Chart.yaml b/charts/diz-in-a-box/Chart.yaml index ab2568e6..670bdf2c 100644 --- a/charts/diz-in-a-box/Chart.yaml +++ b/charts/diz-in-a-box/Chart.yaml @@ -12,7 +12,7 @@ dependencies: - condition: stream-processors.enabled name: stream-processors repository: https://miracum.github.io/charts - version: 1.6.0 + version: 1.6.1 - condition: hapi-fhir-jpaserver.enabled name: hapi-fhir-jpaserver repository: https://hapifhir.github.io/hapi-fhir-jpaserver-starter @@ -20,7 +20,7 @@ dependencies: - condition: fhir-gateway.enabled name: fhir-gateway repository: https://miracum.github.io/charts - version: 6.2.0 + version: 6.2.1 # x-release-please-start-version version: 2.1.3 appVersion: 2.1.3 diff --git a/charts/diz-in-a-box/values.yaml b/charts/diz-in-a-box/values.yaml index d8fa53fd..a20e188a 100644 --- a/charts/diz-in-a-box/values.yaml +++ b/charts/diz-in-a-box/values.yaml @@ -107,7 +107,7 @@ stream-processors: image: registry: ghcr.io repository: miracum/kafka-fhir-to-server - tag: v2.0.6@sha256:155859d275b636e356a99dac3592aa602eef6b68a8f1fe82f7e9670e2be1ef33 + tag: v2.1.2@sha256:ab3e6746b29ac76111525816d171606d4dc5cf96ec1c9c70a7bff6927d61d96a pullPolicy: IfNotPresent env: - name: FHIR_URL @@ -137,7 +137,7 @@ stream-processors: image: registry: ghcr.io repository: miracum/obds-to-fhir - tag: v2.0.15@sha256:c359ef5449068ff0c1231c3ee237801f2fb76932ab9a16386813d02c07ac9f7d + tag: v2.0.16@sha256:7ee77b8002c2eeaefcd207f938cd35d48dba79531c46aa6c6159ba8ced2e03d7 pullPolicy: IfNotPresent env: - name: OPENTRACING_JAEGER_ENABLED diff --git a/docker-compose/compose.full.yaml b/docker-compose/compose.full.yaml index a4ac1619..6712f03f 100644 --- a/docker-compose/compose.full.yaml +++ b/docker-compose/compose.full.yaml @@ -1,6 +1,6 @@ services: kafka: - image: docker.io/bitnami/kafka:3.6.1@sha256:b5254050e61d1912ed9cf3f7107adc6a21ff29d85047b46d7b6df57cf25fa2f7 + image: docker.io/bitnami/kafka:3.7.0@sha256:bb43dbbbe3e4c0e39e5ab41f349114073248dab391668c42ba7e9a6116db881d restart: unless-stopped cap_drop: - ALL diff --git a/docker-compose/compose.obds-to-fhir.yaml b/docker-compose/compose.obds-to-fhir.yaml index 5917ae94..3cc9fad9 100644 --- a/docker-compose/compose.obds-to-fhir.yaml +++ b/docker-compose/compose.obds-to-fhir.yaml @@ -1,6 +1,6 @@ services: obds-to-fhir: - image: ghcr.io/miracum/obds-to-fhir:v2.0.15@sha256:c359ef5449068ff0c1231c3ee237801f2fb76932ab9a16386813d02c07ac9f7d + image: ghcr.io/miracum/obds-to-fhir:v2.0.16@sha256:7ee77b8002c2eeaefcd207f938cd35d48dba79531c46aa6c6159ba8ced2e03d7 restart: unless-stopped cap_drop: - ALL diff --git a/docker-compose/compose.pseudonymization.yaml b/docker-compose/compose.pseudonymization.yaml index b73d50f7..397a8548 100644 --- a/docker-compose/compose.pseudonymization.yaml +++ b/docker-compose/compose.pseudonymization.yaml @@ -1,6 +1,6 @@ services: fhir-gateway: - image: ghcr.io/miracum/fhir-gateway:v3.12.8@sha256:2cf2d887b25594c04af3d6be302f8ccaea12dee90965fe4e2f81d24786ac3b6d + image: ghcr.io/miracum/fhir-gateway:v3.12.11@sha256:440b2ad1e7942de4ac72578ea2bf421d56940ad89bf230b0edbd830d077a843e restart: unless-stopped cap_drop: - ALL @@ -32,7 +32,7 @@ services: SERVICES_KAFKA_GENERATE_OUTPUT_TOPIC_REPLACE_WITH: "fhir.pseudonymized." fhir-pseudonymizer: - image: ghcr.io/miracum/fhir-pseudonymizer:v2.21.6@sha256:f250919efe324d31d9d442058256d6af58c0ea26980fc5852544a93cf8a71b1d + image: ghcr.io/miracum/fhir-pseudonymizer:v2.21.7@sha256:57dae9a580ae6edb51a9bd3e9519d7df73a2c9f89365376ba9547d964302adfb restart: unless-stopped cap_drop: - ALL diff --git a/src/decompose_xmls/compose.yaml b/src/decompose_xmls/compose.yaml index 29bcf040..3a56d53f 100644 --- a/src/decompose_xmls/compose.yaml +++ b/src/decompose_xmls/compose.yaml @@ -12,7 +12,7 @@ services: - ./output-obds-reports:/app/output-files kafka: - image: docker.io/bitnami/kafka:3.6.1@sha256:b5254050e61d1912ed9cf3f7107adc6a21ff29d85047b46d7b6df57cf25fa2f7 + image: docker.io/bitnami/kafka:3.7.0@sha256:bb43dbbbe3e4c0e39e5ab41f349114073248dab391668c42ba7e9a6116db881d restart: unless-stopped profiles: - kafka diff --git a/src/obds_fhir_to_opal/requirements.txt b/src/obds_fhir_to_opal/requirements.txt index 056e543a..b7d6132a 100644 --- a/src/obds_fhir_to_opal/requirements.txt +++ b/src/obds_fhir_to_opal/requirements.txt @@ -1,4 +1,4 @@ pathling==6.2.1 pydantic==1.10.14 pyspark==3.3.2 -pandas==2.2.0 +pandas==2.2.1