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README.Rmd
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README.Rmd
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---
output: github_document
---
<!-- README.md is generated from README.Rmd. Please edit that file -->
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# CPTrackRApp
<!-- badges: start -->
[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://www.tidyverse.org/lifecycle/#experimental)
<!-- badges: end -->
## Overview
The goal of CPTrackRApp is to [fix track identifiers](https://forum.image.sc/t/tracking-label/16409) from [CellProfiler](https://cellprofiler.org/)'s sqlite output. CPTrackRApp is a Shiny app that analyses the sqlite file, and determines the parameters for [CPTrackR](https://github.com/burgerga/CPTrackR) to fix the track.
Additionally it shows the CellProfiler pipeline metadata, and previews the fixed tracks.
## Installation
You can install the development version of CPTrackRApp from with:
```{r, eval=F}
# install.packages("remotes")
remotes::install_github("burgerga/CPTrackRApp")
```
## Usage
To start the app use
```{r, eval=F}
CPTrackRApp::run_app()
```
**Screenshot:**
![CPTrackRApp screenshot](man/figures/screenshot.png)