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The WDL task samplesheet_rename_ids, used by the workflow demux_deplete, fails for Illumina-style comma-delimited sample sheets (w/ header) since it expects Broad GP-style tab-delimited files.
This is the expected behavior as the task is currently written, but the task should perhaps allow Illumina-style sample sheets as illumina.py illumina_demux downstream accepts both formats.
The text was updated successfully, but these errors were encountered:
The WDL task
samplesheet_rename_ids
, used by the workflowdemux_deplete
, fails for Illumina-style comma-delimited sample sheets (w/ header) since it expects Broad GP-style tab-delimited files.This is the expected behavior as the task is currently written, but the task should perhaps allow Illumina-style sample sheets as
illumina.py illumina_demux
downstream accepts both formats.The text was updated successfully, but these errors were encountered: