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Use TDR to read metrics. #4292

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lynnpais opened this issue Aug 13, 2024 · 8 comments
Open

Use TDR to read metrics. #4292

lynnpais opened this issue Aug 13, 2024 · 8 comments
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@lynnpais
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Is your feature request related to a problem? Please describe.
Reduce manual work during the data loading process.

Describe the solution you'd like
Read metrics directly from TDR.

Describe alternatives you've considered
NA
Additional context
Based on this morning's meeting. PMs will follow up on getting access to the TDR.

@lynnpais
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Update from Stacey Hall - seqr should now have access

@bpblanken
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@lynnpais Is it possible to track down an API route that I should use to request the file?

@lynnpais
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@shall48 would you be able to answer Ben's question or know someone in the TDR team to approach?

@shall48
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shall48 commented Oct 16, 2024

Hi @lynnpais I can try to find out.

@lynnpais
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@bpblanken so that you are not blocked indefinitely, I looked into this a bit. Is any of this information helpful/ relevant?

How to ingest and update TDR data with APIs - https://support.terra.bio/hc/en-us/articles/4407166231963-How-to-ingest-and-update-TDR-data-with-APIs

How to create a TDR dataset with APIs - https://support.terra.bio/hc/en-us/articles/4407157465115-How-to-create-a-TDR-dataset-with-APIs

@bpblanken
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@lynnpais yes this does look helpful! I will take a look this afternoon to see if this can get us what we need.

@lynnpais
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Blocked on access and documentation.

@shall48
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shall48 commented Nov 1, 2024

@lynnpais and @bpblanken I have not heard back on a good person to reach out to, but terra support may be able to help.

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