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ISSUES WITH LOGR INFINITE VALUE #126

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Mariamamghar1 opened this issue Sep 5, 2023 · 2 comments
Open

ISSUES WITH LOGR INFINITE VALUE #126

Mariamamghar1 opened this issue Sep 5, 2023 · 2 comments

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@Mariamamghar1
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I am running ichorcna as a tool to analyze my cfDNA data WGS. I do have an issue. One of the further analysis I would like to perform is to run GISTIC to get a bit more information on the data, and I need the logR copy number value, which in some of my samples appears as infinite. Could you support me with the? Do you have an idea of which value I could replace instead?
sample with inf.txt
@brmprnk
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brmprnk commented Jan 16, 2024

Hey there, have you found a solution to your problem already? I'm running into the same issue and cannot determine the reason for the infinite values. Thanks!

@Mariamamghar1
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Hey there, have you found a solution to your problem already? I'm running into the same issue and cannot determine the reason for the infinite values. Thanks!

No, i did not find a solution and no one replied to my question. still stuck with it

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@brmprnk @Mariamamghar1